data_PPS # _chem_comp.id PPS _chem_comp.name ;3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H15 N5 O13 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 507.264 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PPS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1BUX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PPS S2 S2 S 0 1 N N N ? ? ? 5.849 6.093 0.650 S2 PPS 1 PPS OS1 OS1 O 0 1 N N N ? ? ? 6.154 7.570 0.031 OS1 PPS 2 PPS OS2 OS2 O 0 1 N N N ? ? ? 6.809 5.859 1.712 OS2 PPS 3 PPS OS3 OS3 O 0 1 N N N ? ? ? 4.424 6.018 0.912 OS3 PPS 4 PPS O6P O6P O 0 1 N N N 33.034 34.394 4.838 6.196 5.104 -0.603 O6P PPS 5 PPS P2 P2 P 0 1 N N S 33.533 33.404 5.843 6.144 3.524 -0.251 P2 PPS 6 PPS O4P O4P O 0 1 N N N 35.007 33.256 6.038 7.086 3.052 0.820 O4P PPS 7 PPS O5P O5P O 0 1 N N N 32.889 31.941 5.520 6.381 2.827 -1.694 O5P PPS 8 PPS "O5'" O5* O 0 1 N N N 32.827 33.744 7.268 4.566 3.301 0.029 "O5'" PPS 9 PPS "C5'" C5* C 0 1 N N N 32.911 35.019 7.841 4.092 1.980 0.223 "C5'" PPS 10 PPS "C4'" C4* C 0 1 N N R 32.738 35.000 9.351 2.595 2.031 0.465 "C4'" PPS 11 PPS "O4'" O4* O 0 1 N N N 31.568 34.351 9.798 1.933 2.574 -0.689 "O4'" PPS 12 PPS "C1'" C1* C 0 1 N N R 31.960 33.139 10.439 0.622 1.976 -0.784 "C1'" PPS 13 PPS N9 N9 N 0 1 Y N N 31.049 32.053 10.076 0.424 1.450 -2.136 N9 PPS 14 PPS C4 C4 C 0 1 Y N N 30.125 31.491 10.963 -0.749 1.408 -2.837 C4 PPS 15 PPS N3 N3 N 0 1 Y N N 29.847 31.919 12.174 -1.956 1.836 -2.437 N3 PPS 16 PPS C2 C2 C 0 1 Y N N 28.983 31.116 12.794 -2.875 1.627 -3.404 C2 PPS 17 PPS N1 N1 N 0 1 Y N N 28.310 30.065 12.367 -2.709 1.075 -4.630 N1 PPS 18 PPS C6 C6 C 0 1 Y N N 28.518 29.712 11.096 -1.462 0.665 -4.967 C6 PPS 19 PPS N6 N6 N 0 1 N N N 27.706 28.767 10.601 -1.225 0.085 -6.225 N6 PPS 20 PPS C5 C5 C 0 1 Y N N 29.525 30.426 10.337 -0.426 0.827 -4.052 C5 PPS 21 PPS N7 N7 N 0 1 Y N N 30.097 30.265 9.019 0.910 0.517 -4.103 N7 PPS 22 PPS C8 C8 C 0 1 Y N N 30.928 31.316 8.864 1.390 0.903 -2.940 C8 PPS 23 PPS "C2'" C2* C 0 1 N N R 33.377 32.886 9.950 0.518 0.913 0.310 "C2'" PPS 24 PPS "O2'" O2* O 0 1 N N N 34.223 31.964 10.628 -0.210 1.445 1.415 "O2'" PPS 25 PPS "C3'" C3* C 0 1 N N S 33.865 34.265 10.021 1.969 0.663 0.677 "C3'" PPS 26 PPS "O3'" O3* O 0 1 N N N 33.847 34.799 11.336 2.143 0.197 1.998 "O3'" PPS 27 PPS P1 P1 P 0 1 N N N 35.186 35.412 11.937 1.433 -1.191 2.415 P1 PPS 28 PPS O1P O1P O 0 1 N N N 36.008 35.707 10.726 2.004 -1.486 3.899 O1P PPS 29 PPS O2P O2P O 0 1 N N N 34.770 36.594 12.741 2.208 -2.273 1.496 O2P PPS 30 PPS O3P O3P O 0 1 N N N 35.667 34.274 12.723 -0.062 -1.207 2.288 O3P PPS 31 PPS HO1 HO1 H 0 1 N N N 0.950 0.000 0.000 5.775 7.739 -0.863 HO1 PPS 32 PPS HO5P PHO5 H 0 0 N N N 33.206 31.313 6.158 7.293 2.766 -2.048 HO5P PPS 33 PPS "H5'1" 1H5* H 0 0 N N N 32.185 35.719 7.365 4.308 1.388 -0.668 "H5'1" PPS 34 PPS "H5'2" 2H5* H 0 0 N N N 33.864 35.523 7.555 4.597 1.541 1.085 "H5'2" PPS 35 PPS "H4'" H4* H 0 1 N N N 32.699 36.082 9.618 2.399 2.693 1.317 "H4'" PPS 36 PPS "H1'" H1* H 0 1 N N N 31.922 33.203 11.552 -0.125 2.769 -0.673 "H1'" PPS 37 PPS H2 H2 H 0 1 N N N 28.790 31.366 13.851 -3.885 1.945 -3.168 H2 PPS 38 PPS HN61 1HN6 H 0 0 N N N 26.734 29.049 10.725 -0.293 -0.186 -6.475 HN61 PPS 39 PPS HN62 2HN6 H 0 0 N N N 27.865 28.497 9.630 -1.971 0.035 -6.893 HN62 PPS 40 PPS H8 H8 H 0 1 N N N 31.426 31.536 7.905 2.421 0.814 -2.623 H8 PPS 41 PPS "H2'" H2* H 0 1 N N N 33.382 32.353 8.970 -0.000 0.001 -0.003 "H2'" PPS 42 PPS "HO2'" *HO2 H 0 0 N N N 35.109 31.806 10.322 -0.922 0.815 1.623 "HO2'" PPS 43 PPS "H3'" H3* H 0 1 N N N 34.900 34.337 9.613 2.403 -0.065 -0.019 "H3'" PPS 44 PPS HO1P PHO1 H 0 0 N N N 36.808 36.073 11.085 1.661 -2.260 4.394 HO1P PPS 45 PPS HO2P PHO2 H 0 0 N N N 35.570 36.960 13.100 1.897 -3.203 1.494 HO2P PPS 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PPS S2 OS1 SING N N 1 PPS S2 OS2 DOUB N N 2 PPS S2 OS3 DOUB N N 3 PPS S2 O6P SING N N 4 PPS OS1 HO1 SING N N 5 PPS O6P P2 SING N N 6 PPS P2 O4P DOUB N N 7 PPS P2 O5P SING N N 8 PPS P2 "O5'" SING N N 9 PPS O5P HO5P SING N N 10 PPS "O5'" "C5'" SING N N 11 PPS "C5'" "C4'" SING N N 12 PPS "C5'" "H5'1" SING N N 13 PPS "C5'" "H5'2" SING N N 14 PPS "C4'" "O4'" SING N N 15 PPS "C4'" "C3'" SING N N 16 PPS "C4'" "H4'" SING N N 17 PPS "O4'" "C1'" SING N N 18 PPS "C1'" N9 SING N N 19 PPS "C1'" "C2'" SING N N 20 PPS "C1'" "H1'" SING N N 21 PPS N9 C4 SING Y N 22 PPS N9 C8 SING Y N 23 PPS C4 N3 SING Y N 24 PPS C4 C5 DOUB Y N 25 PPS N3 C2 DOUB Y N 26 PPS C2 N1 SING Y N 27 PPS C2 H2 SING N N 28 PPS N1 C6 DOUB Y N 29 PPS C6 N6 SING N N 30 PPS C6 C5 SING Y N 31 PPS N6 HN61 SING N N 32 PPS N6 HN62 SING N N 33 PPS C5 N7 SING Y N 34 PPS N7 C8 DOUB Y N 35 PPS C8 H8 SING N N 36 PPS "C2'" "O2'" SING N N 37 PPS "C2'" "C3'" SING N N 38 PPS "C2'" "H2'" SING N N 39 PPS "O2'" "HO2'" SING N N 40 PPS "C3'" "O3'" SING N N 41 PPS "C3'" "H3'" SING N N 42 PPS "O3'" P1 SING N N 43 PPS P1 O1P SING N N 44 PPS P1 O2P SING N N 45 PPS P1 O3P DOUB N N 46 PPS O1P HO1P SING N N 47 PPS O2P HO2P SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PPS SMILES ACDLabs 10.04 "O=S(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O" PPS SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[S](O)(=O)=O)[C@@H](O[P](O)(O)=O)[C@H]3O" PPS SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[S](O)(=O)=O)[CH](O[P](O)(O)=O)[CH]3O" PPS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)OS(=O)(=O)O)OP(=O)(O)O)O)N" PPS SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OS(=O)(=O)O)OP(=O)(O)O)O)N" PPS InChI InChI 1.03 "InChI=1S/C10H15N5O13P2S/c11-8-5-9(13-2-12-8)15(3-14-5)10-6(16)7(27-29(17,18)19)4(26-10)1-25-30(20,21)28-31(22,23)24/h2-4,6-7,10,16H,1H2,(H,20,21)(H2,11,12,13)(H2,17,18,19)(H,22,23,24)/t4-,6-,7-,10-/m1/s1" PPS InChIKey InChI 1.03 GACDQMDRPRGCTN-KQYNXXCUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PPS "SYSTEMATIC NAME" ACDLabs 10.04 ;5'-O-[(R)-hydroxy(sulfooxy)phosphoryl]adenosine 3'-(dihydrogen phosphate) ; PPS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxy-oxolan-2-yl]methyl sulfo hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PPS "Create component" 1999-07-08 RCSB PPS "Modify descriptor" 2011-06-04 RCSB #