data_PQX # _chem_comp.id PQX _chem_comp.name "1-[(1R)-1-naphthalen-1-ylethyl]piperidine-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H21 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-07 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 283.365 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PQX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8IHO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PQX C7 C1 C 0 1 N N N Y N Y -9.226 -30.588 1.271 -4.942 -0.420 0.379 C7 PQX 1 PQX C8 C2 C 0 1 N N N N N N -9.012 -32.028 0.908 -3.569 0.159 0.605 C8 PQX 2 PQX C10 C3 C 0 1 N N N N N N -9.907 -34.210 0.250 -1.125 -0.347 0.661 C10 PQX 3 PQX C13 C4 C 0 1 N N R N N N -8.259 -35.772 -0.845 0.479 1.173 -0.328 C13 PQX 4 PQX C15 C5 C 0 1 N N N N N N -8.239 -36.186 -2.317 0.703 2.152 -1.483 C15 PQX 5 PQX C17 C6 C 0 1 Y N N N N N -8.119 -38.214 1.968 1.927 -2.204 -1.208 C17 PQX 6 PQX C20 C7 C 0 1 Y N N N N N -10.075 -37.507 0.080 2.740 0.122 0.066 C20 PQX 7 PQX C21 C8 C 0 1 Y N N N N N -11.567 -39.110 1.058 4.930 -0.872 0.459 C21 PQX 8 PQX C22 C9 C 0 1 Y N N N N N -12.563 -38.791 0.146 5.318 0.277 1.077 C22 PQX 9 PQX C24 C10 C 0 1 Y N N N N N -11.070 -37.181 -0.825 3.175 1.289 0.716 C24 PQX 10 PQX C11 C11 C 0 1 N N N N N N -7.680 -33.559 -0.456 -1.867 1.771 -0.254 C11 PQX 11 PQX C12 C12 C 0 1 N N N N N N -8.020 -32.101 -0.235 -3.285 1.231 -0.451 C12 PQX 12 PQX C14 C13 C 0 1 Y N N N N N -8.741 -36.834 0.088 1.439 0.018 -0.454 C14 PQX 13 PQX C16 C14 C 0 1 Y N N N N N -7.817 -37.234 1.037 1.051 -1.128 -1.077 C16 PQX 14 PQX C18 C15 C 0 1 Y N N N N N -9.361 -38.827 1.964 3.193 -2.142 -0.711 C18 PQX 15 PQX C19 C16 C 0 1 Y N N N N N -10.331 -38.478 1.034 3.628 -0.975 -0.062 C19 PQX 16 PQX C23 C17 C 0 1 Y N N N N N -12.302 -37.818 -0.802 4.444 1.355 1.203 C23 PQX 17 PQX C9 C18 C 0 1 N N N N N N -10.265 -32.735 0.431 -2.521 -0.951 0.491 C9 PQX 18 PQX N4 N1 N 0 1 N N N N N N -8.840 -34.408 -0.746 -0.901 0.670 -0.374 N4 PQX 19 PQX O3 O1 O 0 1 N N N Y N Y -10.123 -29.899 0.801 -5.623 -0.019 -0.535 O3 PQX 20 PQX H2 H2 H 0 1 N N N N N N -8.603 -32.566 1.776 -3.521 0.605 1.599 H2 PQX 21 PQX H3 H3 H 0 1 N N N N N N -10.804 -34.754 -0.080 -1.045 0.113 1.646 H3 PQX 22 PQX H4 H4 H 0 1 N N N N N N -9.568 -34.613 1.216 -0.375 -1.133 0.565 H4 PQX 23 PQX H5 H5 H 0 1 N N N N N N -7.198 -35.640 -0.588 0.648 1.685 0.619 H5 PQX 24 PQX H6 H6 H 0 1 N N N N N N -7.811 -37.195 -2.409 0.009 2.987 -1.392 H6 PQX 25 PQX H7 H7 H 0 1 N N N N N N -9.266 -36.186 -2.712 1.727 2.525 -1.449 H7 PQX 26 PQX H8 H8 H 0 1 N N N N N N -7.626 -35.474 -2.890 0.534 1.640 -2.431 H8 PQX 27 PQX H9 H9 H 0 1 N N N N N N -7.381 -38.502 2.702 1.594 -3.103 -1.707 H9 PQX 28 PQX H10 H10 H 0 1 N N N N N N -11.758 -39.867 1.804 5.618 -1.699 0.369 H10 PQX 29 PQX H11 H11 H 0 1 N N N N N N -13.520 -39.291 0.176 6.319 0.353 1.477 H11 PQX 30 PQX H12 H12 H 0 1 N N N N N N -10.884 -36.416 -1.564 2.509 2.133 0.821 H12 PQX 31 PQX H13 H13 H 0 1 N N N N N N -7.191 -33.941 0.452 -1.657 2.525 -1.013 H13 PQX 32 PQX H14 H14 H 0 1 N N N N N N -6.982 -33.626 -1.304 -1.784 2.220 0.736 H14 PQX 33 PQX H15 H15 H 0 1 N N N N N N -7.110 -31.539 0.022 -3.373 0.794 -1.446 H15 PQX 34 PQX H16 H16 H 0 1 N N N N N N -8.467 -31.678 -1.147 -4.003 2.045 -0.346 H16 PQX 35 PQX H17 H17 H 0 1 N N N N N N -6.841 -36.773 1.052 0.051 -1.205 -1.477 H17 PQX 36 PQX H18 H18 H 0 1 N N N N N N -9.579 -39.590 2.697 3.859 -2.986 -0.816 H18 PQX 37 PQX H19 H19 H 0 1 N N N N N N -13.059 -37.554 -1.526 4.777 2.253 1.702 H19 PQX 38 PQX H20 H20 H 0 1 N N N N N N -10.598 -32.307 -0.526 -2.692 -1.695 1.268 H20 PQX 39 PQX H21 H21 H 0 1 N N N N N N -11.065 -32.630 1.178 -2.596 -1.423 -0.489 H21 PQX 40 PQX O1 O2 O 0 1 N Y N Y N Y -8.323 -30.105 2.120 -5.405 -1.384 1.189 O1 PQX 41 PQX H1 H1 H 0 1 N Y N Y N Y -8.498 -29.185 2.279 -6.292 -1.724 1.005 H1 PQX 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PQX C15 C13 SING N N 1 PQX C13 N4 SING N N 2 PQX C13 C14 SING N N 3 PQX C24 C23 DOUB Y N 4 PQX C24 C20 SING Y N 5 PQX C23 C22 SING Y N 6 PQX N4 C11 SING N N 7 PQX N4 C10 SING N N 8 PQX C11 C12 SING N N 9 PQX C12 C8 SING N N 10 PQX C20 C14 DOUB Y N 11 PQX C20 C19 SING Y N 12 PQX C14 C16 SING Y N 13 PQX C22 C21 DOUB Y N 14 PQX C10 C9 SING N N 15 PQX C9 C8 SING N N 16 PQX O3 C7 DOUB N N 17 PQX C8 C7 SING N N 18 PQX C19 C21 SING Y N 19 PQX C19 C18 DOUB Y N 20 PQX C16 C17 DOUB Y N 21 PQX C18 C17 SING Y N 22 PQX C8 H2 SING N N 23 PQX C10 H3 SING N N 24 PQX C10 H4 SING N N 25 PQX C13 H5 SING N N 26 PQX C15 H6 SING N N 27 PQX C15 H7 SING N N 28 PQX C15 H8 SING N N 29 PQX C17 H9 SING N N 30 PQX C21 H10 SING N N 31 PQX C22 H11 SING N N 32 PQX C24 H12 SING N N 33 PQX C11 H13 SING N N 34 PQX C11 H14 SING N N 35 PQX C12 H15 SING N N 36 PQX C12 H16 SING N N 37 PQX C16 H17 SING N N 38 PQX C18 H18 SING N N 39 PQX C23 H19 SING N N 40 PQX C9 H20 SING N N 41 PQX C9 H21 SING N N 42 PQX C7 O1 SING N N 43 PQX O1 H1 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PQX InChI InChI 1.06 "InChI=1S/C18H21NO2/c1-13(19-11-9-15(10-12-19)18(20)21)16-8-4-6-14-5-2-3-7-17(14)16/h2-8,13,15H,9-12H2,1H3,(H,20,21)/t13-/m1/s1" PQX InChIKey InChI 1.06 KGMWLBRRSONKQK-CYBMUJFWSA-N PQX SMILES_CANONICAL CACTVS 3.385 "C[C@@H](N1CCC(CC1)C(O)=O)c2cccc3ccccc23" PQX SMILES CACTVS 3.385 "C[CH](N1CCC(CC1)C(O)=O)c2cccc3ccccc23" PQX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](c1cccc2c1cccc2)N3CCC(CC3)C(=O)O" PQX SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1cccc2)N3CCC(CC3)C(=O)O" # _pdbx_chem_comp_identifier.comp_id PQX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(1~{R})-1-naphthalen-1-ylethyl]piperidine-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PQX "Create component" 2023-03-07 PDBJ PQX "Modify backbone" 2023-11-03 PDBE PQX "Initial release" 2024-01-03 RCSB PQX "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id PQX _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position N-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #