data_PRD # _chem_comp.id PRD _chem_comp.name "N6-(2,5-DIMETHOXY-BENZYL)-N6-METHYL-PYRIDO[2,3-D]PYRIMIDINE-2,4,6-TRIAMINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H20 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 340.380 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PRD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1BOZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PRD C4A C4A C 0 1 Y N N 28.328 13.358 -2.090 -0.160 -0.428 -2.917 C4A PRD 1 PRD C8A C8A C 0 1 Y N N 29.190 13.505 -3.202 -0.475 0.950 -2.848 C8A PRD 2 PRD "N1'" N1* N 0 1 Y N N 28.664 13.121 -4.511 -0.252 1.712 -3.929 "N1'" PRD 3 PRD "N8'" N8* N 0 1 Y N N 30.487 13.986 -3.094 -0.979 1.463 -1.725 "N8'" PRD 4 PRD C7B C7* C 0 1 Y N N 30.919 14.319 -1.836 -1.197 0.716 -0.667 C7B PRD 5 PRD C6B C6* C 0 1 Y N N 30.073 14.192 -0.679 -0.911 -0.650 -0.663 C6B PRD 6 PRD "N6'" N6* N 0 1 N N R 30.319 14.489 0.731 -1.154 -1.417 0.481 "N6'" PRD 7 PRD C61 C61 C 0 1 N N N 29.146 14.944 1.494 -0.852 -2.850 0.480 C61 PRD 8 PRD C5B C5* C 0 1 Y N N 28.766 13.723 -0.852 -0.379 -1.240 -1.798 C5B PRD 9 PRD C4B C4* C 0 1 Y N N 27.056 12.869 -2.309 0.375 -0.941 -4.124 C4B PRD 10 PRD "N4'" N4* N 0 1 N N N 26.098 12.693 -1.365 0.698 -2.276 -4.243 "N4'" PRD 11 PRD "N3'" N3* N 0 1 Y N N 26.695 12.586 -3.588 0.557 -0.104 -5.136 "N3'" PRD 12 PRD C2B C2* C 0 1 Y N N 27.445 12.687 -4.713 0.248 1.184 -5.030 C2B PRD 13 PRD "N2'" N2* N 0 1 N N N 27.040 12.336 -5.975 0.462 2.007 -6.120 "N2'" PRD 14 PRD "C7'" "C7'" C 0 1 N N N 31.496 14.843 1.262 -1.710 -0.786 1.681 "C7'" PRD 15 PRD "C1'" "C1'" C 0 1 Y N N 32.398 15.968 0.696 -0.587 -0.294 2.556 "C1'" PRD 16 PRD "C2'" "C2'" C 0 1 Y N N 33.706 15.633 0.540 -0.870 0.341 3.756 "C2'" PRD 17 PRD "C3'" "C3'" C 0 1 Y N N 34.681 16.522 0.041 0.163 0.796 4.561 "C3'" PRD 18 PRD "C4'" "C4'" C 0 1 Y N N 34.245 17.820 -0.283 1.475 0.614 4.169 "C4'" PRD 19 PRD "C5'" "C5'" C 0 1 Y N N 32.880 18.155 -0.110 1.758 -0.022 2.969 "C5'" PRD 20 PRD "C6'" "C6'" C 0 1 Y N N 31.953 17.299 0.373 0.724 -0.471 2.161 "C6'" PRD 21 PRD "O2'" "O2'" O 0 1 N N N 34.133 14.306 0.861 -2.162 0.520 4.142 "O2'" PRD 22 PRD C21 C21 C 0 1 N N N 35.299 14.489 1.779 -2.127 1.196 5.400 C21 PRD 23 PRD "O5'" "O5'" O 0 1 N N N 32.728 19.512 -0.477 3.050 -0.201 2.583 "O5'" PRD 24 PRD C51 C51 C 0 1 N N N 31.504 20.035 0.127 3.869 0.365 3.608 C51 PRD 25 PRD "H7'" H7* H 0 1 N N N 31.954 14.691 -1.754 -1.607 1.170 0.222 "H7'" PRD 26 PRD HC61 1HC6 H 0 0 N N N 29.333 15.170 2.569 -1.105 -3.276 1.451 HC61 PRD 27 PRD HC62 2HC6 H 0 0 N N N 28.682 15.825 0.992 -1.436 -3.344 -0.296 HC62 PRD 28 PRD HC63 3HC6 H 0 0 N N N 28.317 14.204 1.398 0.210 -2.998 0.285 HC63 PRD 29 PRD "H5'" H5* H 0 1 N N N 28.070 13.639 0.000 -0.145 -2.294 -1.820 "H5'" PRD 30 PRD HN41 1HN4 H 0 0 N N N 25.158 12.331 -1.526 1.064 -2.614 -5.076 HN41 PRD 31 PRD HN42 2HN4 H 0 0 N N N 25.984 13.592 -0.897 0.559 -2.877 -3.495 HN42 PRD 32 PRD HN21 1HN2 H 0 0 N N N 26.090 11.998 -6.132 0.829 1.640 -6.940 HN21 PRD 33 PRD HN22 2HN2 H 0 0 N N N 27.693 11.643 -6.341 0.245 2.950 -6.066 HN22 PRD 34 PRD HC71 1HC7 H 0 0 N N N 31.312 15.079 2.336 -2.307 -1.515 2.230 HC71 PRD 35 PRD HC72 2HC7 H 0 0 N N N 32.120 13.920 1.319 -2.340 0.053 1.390 HC72 PRD 36 PRD "HC3'" "HC3'" H 0 0 N N N 35.733 16.217 -0.089 -0.057 1.291 5.495 "HC3'" PRD 37 PRD "HC4'" "HC4'" H 0 0 N N N 34.962 18.564 -0.667 2.280 0.967 4.796 "HC4'" PRD 38 PRD "HC6'" "HC6'" H 0 0 N N N 30.917 17.657 0.493 0.945 -0.966 1.227 "HC6'" PRD 39 PRD HC21 1HC2 H 0 0 N N N 35.631 13.454 2.029 -3.145 1.362 5.752 HC21 PRD 40 PRD HC22 2HC2 H 0 0 N N N 36.106 15.135 1.361 -1.587 0.586 6.125 HC22 PRD 41 PRD HC23 3HC2 H 0 0 N N N 35.078 15.121 2.670 -1.621 2.154 5.284 HC23 PRD 42 PRD HC51 1HC5 H 0 0 N N N 31.384 21.105 -0.162 4.919 0.245 3.341 HC51 PRD 43 PRD HC52 2HC5 H 0 0 N N N 30.608 19.422 -0.130 3.640 1.426 3.711 HC52 PRD 44 PRD HC53 3HC5 H 0 0 N N N 31.480 19.889 1.232 3.674 -0.142 4.552 HC53 PRD 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD C4A C8A DOUB Y N 1 PRD C4A C5B SING Y N 2 PRD C4A C4B SING Y N 3 PRD C8A "N1'" SING Y N 4 PRD C8A "N8'" SING Y N 5 PRD "N1'" C2B DOUB Y N 6 PRD "N8'" C7B DOUB Y N 7 PRD C7B C6B SING Y N 8 PRD C7B "H7'" SING N N 9 PRD C6B "N6'" SING N N 10 PRD C6B C5B DOUB Y N 11 PRD "N6'" C61 SING N N 12 PRD "N6'" "C7'" SING N N 13 PRD C61 HC61 SING N N 14 PRD C61 HC62 SING N N 15 PRD C61 HC63 SING N N 16 PRD C5B "H5'" SING N N 17 PRD C4B "N4'" SING N N 18 PRD C4B "N3'" DOUB Y N 19 PRD "N4'" HN41 SING N N 20 PRD "N4'" HN42 SING N N 21 PRD "N3'" C2B SING Y N 22 PRD C2B "N2'" SING N N 23 PRD "N2'" HN21 SING N N 24 PRD "N2'" HN22 SING N N 25 PRD "C7'" "C1'" SING N N 26 PRD "C7'" HC71 SING N N 27 PRD "C7'" HC72 SING N N 28 PRD "C1'" "C2'" DOUB Y N 29 PRD "C1'" "C6'" SING Y N 30 PRD "C2'" "C3'" SING Y N 31 PRD "C2'" "O2'" SING N N 32 PRD "C3'" "C4'" DOUB Y N 33 PRD "C3'" "HC3'" SING N N 34 PRD "C4'" "C5'" SING Y N 35 PRD "C4'" "HC4'" SING N N 36 PRD "C5'" "C6'" DOUB Y N 37 PRD "C5'" "O5'" SING N N 38 PRD "C6'" "HC6'" SING N N 39 PRD "O2'" C21 SING N N 40 PRD C21 HC21 SING N N 41 PRD C21 HC22 SING N N 42 PRD C21 HC23 SING N N 43 PRD "O5'" C51 SING N N 44 PRD C51 HC51 SING N N 45 PRD C51 HC52 SING N N 46 PRD C51 HC53 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD SMILES ACDLabs 10.04 "n1cc(cc2c1nc(nc2N)N)N(Cc3cc(OC)ccc3OC)C" PRD SMILES_CANONICAL CACTVS 3.341 "COc1ccc(OC)c(CN(C)c2cnc3nc(N)nc(N)c3c2)c1" PRD SMILES CACTVS 3.341 "COc1ccc(OC)c(CN(C)c2cnc3nc(N)nc(N)c3c2)c1" PRD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[N@](Cc1cc(ccc1OC)OC)c2cc3c(nc(nc3nc2)N)N" PRD SMILES "OpenEye OEToolkits" 1.5.0 "CN(Cc1cc(ccc1OC)OC)c2cc3c(nc(nc3nc2)N)N" PRD InChI InChI 1.03 "InChI=1S/C17H20N6O2/c1-23(9-10-6-12(24-2)4-5-14(10)25-3)11-7-13-15(18)21-17(19)22-16(13)20-8-11/h4-8H,9H2,1-3H3,(H4,18,19,20,21,22)" PRD InChIKey InChI 1.03 HZTFNSCZLJLPEO-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD "SYSTEMATIC NAME" ACDLabs 10.04 "N~6~-(2,5-dimethoxybenzyl)-N~6~-methylpyrido[2,3-d]pyrimidine-2,4,6-triamine" PRD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N6-[(2,5-dimethoxyphenyl)methyl]-N6-methyl-pyrido[5,6-e]pyrimidine-2,4,6-triamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PRD "Create component" 1999-07-08 RCSB PRD "Modify descriptor" 2011-06-04 RCSB #