data_PRK # _chem_comp.id PRK _chem_comp.name N~6~-propanoyl-L-lysine _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H18 N2 O3" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms "N(6)-Propionyllysine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-05-12 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 202.251 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PRK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3MUK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PRK C C C 0 1 N N N Y N Y -4.693 -10.153 -5.994 -4.582 -0.308 -0.036 C PRK 1 PRK N N N 0 1 N N N Y Y N -2.523 -10.343 -4.863 -3.355 1.769 0.257 N PRK 2 PRK O O O 0 1 N N N Y N Y -5.967 -10.280 -5.985 -5.248 0.026 0.915 O PRK 3 PRK CA CA C 0 1 N N S Y N N -3.944 -10.026 -4.685 -3.319 0.442 -0.372 CA PRK 4 PRK CB CB C 0 1 N N N N N N -4.113 -8.598 -4.134 -2.109 -0.337 0.148 CB PRK 5 PRK CD CD C 0 1 N N N N N N -4.139 -7.264 -2.016 0.387 -0.419 0.220 CD PRK 6 PRK CE CE C 0 1 N N N N N N -3.604 -7.177 -0.582 1.673 0.277 -0.229 CE PRK 7 PRK CG CG C 0 1 N N N N N N -3.518 -8.441 -2.734 -0.823 0.360 -0.301 CG PRK 8 PRK NZ NZ N 0 1 N N N N N N -4.371 -6.092 0.064 2.832 -0.468 0.270 NZ PRK 9 PRK CAA CAA C 0 1 N N N N N N -5.954 -4.242 1.405 6.557 -0.108 0.059 CAA PRK 10 PRK OAD OAD O 0 1 N N N N N N -2.550 -4.838 0.239 4.242 0.967 -0.664 OAD PRK 11 PRK CAF CAF C 0 1 N N N N N N -4.562 -3.825 1.066 5.271 -0.804 0.508 CAF PRK 12 PRK CAL CAL C 0 1 N N N N N N -3.776 -4.952 0.429 4.079 -0.038 -0.005 CAL PRK 13 PRK OXT OXT O 0 1 N Y N Y N Y -3.956 -10.072 -7.110 -4.964 -1.351 -0.790 OXT PRK 14 PRK H H H 0 1 N N N Y Y N -2.049 -10.253 -3.987 -3.428 1.691 1.260 H PRK 15 PRK H2 H2 H 0 1 N Y N Y Y N -2.430 -11.281 -5.197 -2.549 2.316 -0.006 H2 PRK 16 PRK HA HA H 0 1 N N N Y N N -4.361 -10.745 -3.965 -3.240 0.555 -1.454 HA PRK 17 PRK HB2 HB2 H 0 1 N N N N N N -3.601 -7.899 -4.812 -2.142 -0.373 1.237 HB2 PRK 18 PRK HB3 HB3 H 0 1 N N N N N N -5.187 -8.367 -4.085 -2.131 -1.351 -0.250 HB3 PRK 19 PRK HD2 HD2 H 0 1 N N N N N N -5.231 -7.392 -1.988 0.365 -1.433 -0.178 HD2 PRK 20 PRK HD3 HD3 H 0 1 N N N N N N -3.887 -6.338 -2.553 0.354 -0.455 1.309 HD3 PRK 21 PRK HE2 HE2 H 0 1 N N N N N N -3.753 -8.129 -0.052 1.706 0.313 -1.318 HE2 PRK 22 PRK HE3 HE3 H 0 1 N N N N N N -2.528 -6.949 -0.580 1.695 1.292 0.169 HE3 PRK 23 PRK HG2 HG2 H 0 1 N N N N N N -3.713 -9.357 -2.157 -0.790 0.396 -1.390 HG2 PRK 24 PRK HG3 HG3 H 0 1 N N N N N N -2.434 -8.277 -2.821 -0.801 1.374 0.097 HG3 PRK 25 PRK HZ HZ H 0 1 N N N N N N -5.350 -6.212 0.231 2.701 -1.271 0.798 HZ PRK 26 PRK HAA HAA H 0 1 N N N N N N -6.489 -3.397 1.864 6.589 -0.072 -1.030 HAA PRK 27 PRK HAAA HAAA H 0 0 N N N N N N -6.477 -4.553 0.488 6.579 0.906 0.457 HAAA PRK 28 PRK HAAB HAAB H 0 0 N N N N N N -5.922 -5.084 2.112 7.419 -0.663 0.430 HAAB PRK 29 PRK HAF HAF H 0 1 N N N N N N -4.608 -2.984 0.359 5.249 -1.819 0.110 HAF PRK 30 PRK HAFA HAFA H 0 0 N N N N N N -4.051 -3.517 1.990 5.238 -0.841 1.597 HAFA PRK 31 PRK HXT HXT H 0 1 N Y N Y N Y -4.524 -10.123 -7.870 -5.779 -1.804 -0.532 HXT PRK 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRK C O DOUB N N 1 PRK C CA SING N N 2 PRK C OXT SING N N 3 PRK N CA SING N N 4 PRK CA CB SING N N 5 PRK CB CG SING N N 6 PRK CD CE SING N N 7 PRK CD CG SING N N 8 PRK CE NZ SING N N 9 PRK NZ CAL SING N N 10 PRK CAA CAF SING N N 11 PRK OAD CAL DOUB N N 12 PRK CAF CAL SING N N 13 PRK N H SING N N 14 PRK N H2 SING N N 15 PRK CA HA SING N N 16 PRK CB HB2 SING N N 17 PRK CB HB3 SING N N 18 PRK CD HD2 SING N N 19 PRK CD HD3 SING N N 20 PRK CE HE2 SING N N 21 PRK CE HE3 SING N N 22 PRK CG HG2 SING N N 23 PRK CG HG3 SING N N 24 PRK NZ HZ SING N N 25 PRK CAA HAA SING N N 26 PRK CAA HAAA SING N N 27 PRK CAA HAAB SING N N 28 PRK CAF HAF SING N N 29 PRK CAF HAFA SING N N 30 PRK OXT HXT SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRK SMILES ACDLabs 12.01 "O=C(O)C(N)CCCCNC(=O)CC" PRK SMILES_CANONICAL CACTVS 3.370 "CCC(=O)NCCCC[C@H](N)C(O)=O" PRK SMILES CACTVS 3.370 "CCC(=O)NCCCC[CH](N)C(O)=O" PRK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CCC(=O)NCCCC[C@@H](C(=O)O)N" PRK SMILES "OpenEye OEToolkits" 1.7.0 "CCC(=O)NCCCCC(C(=O)O)N" PRK InChI InChI 1.03 "InChI=1S/C9H18N2O3/c1-2-8(12)11-6-4-3-5-7(10)9(13)14/h7H,2-6,10H2,1H3,(H,11,12)(H,13,14)/t7-/m0/s1" PRK InChIKey InChI 1.03 PCANIHQHQYUJPY-ZETCQYMHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRK "SYSTEMATIC NAME" ACDLabs 12.01 N~6~-propanoyl-L-lysine PRK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S)-2-azanyl-6-(propanoylamino)hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PRK "Create component" 2010-05-12 PDBJ PRK "Modify descriptor" 2011-06-04 RCSB PRK "Modify synonyms" 2021-03-01 PDBE PRK "Modify backbone" 2023-11-03 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id PRK _pdbx_chem_comp_synonyms.name "N(6)-Propionyllysine" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #