data_PRM # _chem_comp.id PRM _chem_comp.name "3,8-DIAMINO-5[3-(DIETHYLMETHYLAMMONIO)PROPYL]-6-PHENYLPHENANTHRIDINIUM" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H34 N4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms PROPIDIUM _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2002-12-11 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 414.586 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PRM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1N5R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PRM C16 C16 C 0 1 Y N N 37.727 25.772 9.693 -4.408 0.825 -0.830 C16 PRM 1 PRM C17 C17 C 0 1 Y N N 38.507 25.953 8.522 -3.109 0.727 -0.335 C17 PRM 2 PRM C18 C18 C 0 1 Y N N 37.999 25.313 7.297 -2.533 -0.545 -0.107 C18 PRM 3 PRM C19 C19 C 0 1 Y N N 36.783 24.536 7.416 -3.275 -1.694 -0.383 C19 PRM 4 PRM C20 C20 C 0 1 Y N N 36.052 24.380 8.628 -4.562 -1.570 -0.874 C20 PRM 5 PRM C21 C21 C 0 1 Y N N 36.528 25.008 9.776 -5.120 -0.310 -1.095 C21 PRM 6 PRM C22 C22 C 0 1 Y N N 38.771 25.439 6.078 -1.164 -0.611 0.410 C22 PRM 7 PRM N23 N23 N 1 1 Y N N 40.089 26.024 6.038 -0.490 0.486 0.666 N23 PRM 8 PRM C24 C24 C 0 1 Y N N 40.613 26.485 7.264 -0.984 1.718 0.470 C24 PRM 9 PRM C25 C25 C 0 1 Y N N 39.828 26.493 8.518 -2.293 1.908 -0.031 C25 PRM 10 PRM C26 C26 C 0 1 Y N N 41.971 26.953 7.372 -0.201 2.846 0.762 C26 PRM 11 PRM C27 C27 C 0 1 Y N N 42.588 27.395 8.561 -0.716 4.110 0.558 C27 PRM 12 PRM C28 C28 C 0 1 Y N N 41.838 27.391 9.750 -2.010 4.280 0.063 C28 PRM 13 PRM C29 C29 C 0 1 Y N N 40.481 26.942 9.696 -2.789 3.198 -0.228 C29 PRM 14 PRM C30 C30 C 0 1 Y N N 38.172 24.963 4.786 -0.535 -1.929 0.651 C30 PRM 15 PRM C31 C31 C 0 1 Y N N 37.470 25.903 3.952 -0.376 -2.832 -0.401 C31 PRM 16 PRM C32 C32 C 0 1 Y N N 36.930 25.479 2.701 0.210 -4.060 -0.170 C32 PRM 17 PRM C33 C33 C 0 1 Y N N 37.082 24.135 2.283 0.641 -4.395 1.102 C33 PRM 18 PRM C34 C34 C 0 1 Y N N 37.774 23.209 3.114 0.485 -3.505 2.149 C34 PRM 19 PRM C35 C35 C 0 1 Y N N 38.317 23.622 4.363 -0.094 -2.272 1.929 C35 PRM 20 PRM N36 N36 N 0 1 N N N 34.871 23.610 8.704 -5.310 -2.716 -1.152 N36 PRM 21 PRM N37 N37 N 0 1 N N N 43.915 27.845 8.585 0.065 5.230 0.850 N37 PRM 22 PRM C41 C41 C 0 1 N N N 40.894 26.187 4.741 0.873 0.359 1.187 C41 PRM 23 PRM C42 C42 C 0 1 N N N 41.834 25.063 4.316 1.870 0.423 0.028 C42 PRM 24 PRM C43 C43 C 0 1 N N N 42.194 25.118 2.832 3.294 0.290 0.572 C43 PRM 25 PRM N44 N44 N 1 1 N N N 43.542 24.644 2.250 4.251 0.352 -0.541 N44 PRM 26 PRM C44 C44 C 0 1 N N N 43.598 23.120 2.272 5.618 0.224 -0.018 C44 PRM 27 PRM C45 C45 C 0 1 N N N 42.454 22.193 1.845 6.615 0.288 -1.177 C45 PRM 28 PRM C46 C46 C 0 1 N N N 44.699 25.150 3.076 4.111 1.638 -1.236 C46 PRM 29 PRM C47 C47 C 0 1 N N N 43.690 25.122 0.810 3.981 -0.745 -1.480 C47 PRM 30 PRM C48 C48 C 0 1 N N N 44.967 25.045 -0.035 4.127 -2.085 -0.756 C48 PRM 31 PRM H16 H16 H 0 1 N N N 38.082 26.265 10.614 -4.850 1.795 -1.005 H16 PRM 32 PRM H19 H19 H 0 1 N N N 36.386 24.028 6.521 -2.848 -2.672 -0.214 H19 PRM 33 PRM H21 H21 H 0 1 N N N 35.972 24.903 10.723 -6.126 -0.231 -1.478 H21 PRM 34 PRM H26 H26 H 0 1 N N N 42.595 26.975 6.462 0.801 2.724 1.146 H26 PRM 35 PRM H28 H28 H 0 1 N N N 42.299 27.729 10.694 -2.398 5.276 -0.091 H28 PRM 36 PRM H29 H29 H 0 1 N N N 39.896 26.942 10.631 -3.789 3.340 -0.610 H29 PRM 37 PRM H31 H31 H 0 1 N N N 37.346 26.951 4.272 -0.712 -2.571 -1.393 H31 PRM 38 PRM H32 H32 H 0 1 N N N 36.393 26.193 2.054 0.334 -4.760 -0.983 H32 PRM 39 PRM H33 H33 H 0 1 N N N 36.664 23.811 1.315 1.099 -5.357 1.278 H33 PRM 40 PRM H34 H34 H 0 1 N N N 37.891 22.162 2.787 0.822 -3.773 3.139 H34 PRM 41 PRM H35 H35 H 0 1 N N N 38.851 22.901 5.005 -0.215 -1.577 2.748 H35 PRM 42 PRM H361 1H36 H 0 0 N N N 35.087 22.678 8.351 -6.213 -2.634 -1.496 H361 PRM 43 PRM H362 2H36 H 0 0 N N N 34.347 23.498 9.572 -4.927 -3.594 -1.000 H362 PRM 44 PRM H371 1H37 H 0 0 N N N 44.004 28.589 7.893 0.965 5.117 1.193 H371 PRM 45 PRM H372 2H37 H 0 0 N N N 44.361 28.165 9.445 -0.292 6.120 0.708 H372 PRM 46 PRM H411 1H41 H 0 0 N N N 41.471 27.140 4.791 0.977 -0.596 1.703 H411 PRM 47 PRM H412 2H41 H 0 0 N N N 40.190 26.405 3.904 1.074 1.172 1.884 H412 PRM 48 PRM H421 1H42 H 0 0 N N N 41.413 24.067 4.587 1.766 1.377 -0.488 H421 PRM 49 PRM H422 2H42 H 0 0 N N N 42.752 25.050 4.949 1.670 -0.391 -0.669 H422 PRM 50 PRM H431 1H43 H 0 0 N N N 42.048 26.172 2.500 3.398 -0.665 1.088 H431 PRM 51 PRM H432 2H43 H 0 0 N N N 41.391 24.574 2.281 3.494 1.103 1.269 H432 PRM 52 PRM H441 1H44 H 0 0 N N N 43.882 22.824 3.309 5.722 -0.731 0.498 H441 PRM 53 PRM H442 2H44 H 0 0 N N N 44.492 22.823 1.676 5.818 1.037 0.679 H442 PRM 54 PRM H451 1H45 H 0 0 N N N 42.171 22.489 0.808 6.415 -0.525 -1.874 H451 PRM 55 PRM H452 2H45 H 0 0 N N N 42.495 21.079 1.861 6.511 1.243 -1.693 H452 PRM 56 PRM H453 3H45 H 0 0 N N N 41.560 22.490 2.441 7.629 0.193 -0.790 H453 PRM 57 PRM H461 1H46 H 0 0 N N N 44.593 24.866 4.149 4.821 1.684 -2.062 H461 PRM 58 PRM H462 2H46 H 0 0 N N N 45.673 24.808 2.655 3.097 1.733 -1.624 H462 PRM 59 PRM H463 3H46 H 0 0 N N N 44.668 26.259 3.190 4.311 2.452 -0.539 H463 PRM 60 PRM H471 1H47 H 0 0 N N N 43.367 26.189 0.797 2.967 -0.650 -1.868 H471 PRM 61 PRM H472 2H47 H 0 0 N N N 42.892 24.609 0.224 4.692 -0.699 -2.306 H472 PRM 62 PRM H481 1H48 H 0 0 N N N 45.290 23.978 -0.022 3.927 -2.898 -1.453 H481 PRM 63 PRM H482 2H48 H 0 0 N N N 45.075 25.395 -1.088 5.142 -2.180 -0.368 H482 PRM 64 PRM H483 3H48 H 0 0 N N N 45.765 25.558 0.551 3.417 -2.131 0.070 H483 PRM 65 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRM C16 C17 DOUB Y N 1 PRM C16 C21 SING Y N 2 PRM C16 H16 SING N N 3 PRM C17 C18 SING Y N 4 PRM C17 C25 SING Y N 5 PRM C18 C19 DOUB Y N 6 PRM C18 C22 SING Y N 7 PRM C19 C20 SING Y N 8 PRM C19 H19 SING N N 9 PRM C20 C21 DOUB Y N 10 PRM C20 N36 SING N N 11 PRM C21 H21 SING N N 12 PRM C22 N23 DOUB Y N 13 PRM C22 C30 SING Y N 14 PRM N23 C24 SING Y N 15 PRM N23 C41 SING N N 16 PRM C24 C25 DOUB Y N 17 PRM C24 C26 SING Y N 18 PRM C25 C29 SING Y N 19 PRM C26 C27 DOUB Y N 20 PRM C26 H26 SING N N 21 PRM C27 C28 SING Y N 22 PRM C27 N37 SING N N 23 PRM C28 C29 DOUB Y N 24 PRM C28 H28 SING N N 25 PRM C29 H29 SING N N 26 PRM C30 C31 DOUB Y N 27 PRM C30 C35 SING Y N 28 PRM C31 C32 SING Y N 29 PRM C31 H31 SING N N 30 PRM C32 C33 DOUB Y N 31 PRM C32 H32 SING N N 32 PRM C33 C34 SING Y N 33 PRM C33 H33 SING N N 34 PRM C34 C35 DOUB Y N 35 PRM C34 H34 SING N N 36 PRM C35 H35 SING N N 37 PRM N36 H361 SING N N 38 PRM N36 H362 SING N N 39 PRM N37 H371 SING N N 40 PRM N37 H372 SING N N 41 PRM C41 C42 SING N N 42 PRM C41 H411 SING N N 43 PRM C41 H412 SING N N 44 PRM C42 C43 SING N N 45 PRM C42 H421 SING N N 46 PRM C42 H422 SING N N 47 PRM C43 N44 SING N N 48 PRM C43 H431 SING N N 49 PRM C43 H432 SING N N 50 PRM N44 C44 SING N N 51 PRM N44 C46 SING N N 52 PRM N44 C47 SING N N 53 PRM C44 C45 SING N N 54 PRM C44 H441 SING N N 55 PRM C44 H442 SING N N 56 PRM C45 H451 SING N N 57 PRM C45 H452 SING N N 58 PRM C45 H453 SING N N 59 PRM C46 H461 SING N N 60 PRM C46 H462 SING N N 61 PRM C46 H463 SING N N 62 PRM C47 C48 SING N N 63 PRM C47 H471 SING N N 64 PRM C47 H472 SING N N 65 PRM C48 H481 SING N N 66 PRM C48 H482 SING N N 67 PRM C48 H483 SING N N 68 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRM SMILES ACDLabs 10.04 "c4c3c1ccc(cc1c(c2ccccc2)[n+](c3cc(N)c4)CCC[N+](CC)(CC)C)N" PRM SMILES_CANONICAL CACTVS 3.341 "CC[N+](C)(CC)CCC[n+]1c2cc(N)ccc2c3ccc(N)cc3c1c4ccccc4" PRM SMILES CACTVS 3.341 "CC[N+](C)(CC)CCC[n+]1c2cc(N)ccc2c3ccc(N)cc3c1c4ccccc4" PRM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC[N+](C)(CC)CCC[n+]1c2cc(ccc2c3ccc(cc3c1c4ccccc4)N)N" PRM SMILES "OpenEye OEToolkits" 1.5.0 "CC[N+](C)(CC)CCC[n+]1c2cc(ccc2c3ccc(cc3c1c4ccccc4)N)N" PRM InChI InChI 1.03 "InChI=1S/C27H33N4/c1-4-31(3,5-2)17-9-16-30-26-19-22(29)13-15-24(26)23-14-12-21(28)18-25(23)27(30)20-10-7-6-8-11-20/h6-8,10-15,18-19,29H,4-5,9,16-17,28H2,1-3H3/q+1/p+1" PRM InChIKey InChI 1.03 ZDWVWKDAWBGPDN-UHFFFAOYSA-O # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRM "SYSTEMATIC NAME" ACDLabs 10.04 "3,8-diamino-5-{3-[diethyl(methyl)ammonio]propyl}-6-phenylphenanthridinium" PRM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3-(3,8-diamino-6-phenyl-phenanthridin-5-ium-5-yl)propyl-diethyl-methyl-azanium" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PRM "Create component" 2002-12-11 RCSB PRM "Modify aromatic_flag" 2011-06-04 RCSB PRM "Modify descriptor" 2011-06-04 RCSB PRM "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id PRM _pdbx_chem_comp_synonyms.name PROPIDIUM _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##