data_PRN # _chem_comp.id PRN _chem_comp.name ;PURINE 2'-DEOXYRIBO-5'-MONOPHOSPHATE ; _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H13 N4 O6 P" _chem_comp.mon_nstd_parent_comp_id DA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 316.207 _chem_comp.one_letter_code A _chem_comp.three_letter_code PRN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1CL8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PRN N1 N1 N 0 1 Y N N 15.542 25.233 1.991 -0.591 0.452 6.121 N1 PRN 1 PRN C2 C2 C 0 1 Y N N 15.785 24.083 1.328 0.440 1.026 5.531 C2 PRN 2 PRN N3 N3 N 0 1 Y N N 16.952 23.525 1.048 0.665 0.915 4.238 N3 PRN 3 PRN C4 C4 C 0 1 Y N N 17.995 24.226 1.500 -0.151 0.204 3.473 C4 PRN 4 PRN C5 C5 C 0 1 Y N N 17.865 25.428 2.200 -1.268 -0.421 4.062 C5 PRN 5 PRN C6 C6 C 0 1 Y N N 16.591 25.921 2.435 -1.460 -0.271 5.436 C6 PRN 6 PRN N7 N7 N 0 1 Y N N 19.150 25.826 2.487 -1.930 -1.067 3.071 N7 PRN 7 PRN C8 C8 C 0 1 Y N N 19.955 24.893 1.970 -1.310 -0.879 1.942 C8 PRN 8 PRN N9 N9 N 0 1 Y N N 19.322 23.913 1.368 -0.210 -0.099 2.136 N9 PRN 9 PRN "C1'" C1* C 0 1 N N R 19.864 22.736 0.691 0.739 0.330 1.107 "C1'" PRN 10 PRN "C2'" C2* C 0 1 N N N 21.261 22.870 0.129 1.885 -0.697 0.970 "C2'" PRN 11 PRN "C3'" C3* C 0 1 N N S 21.629 21.405 -0.058 2.185 -0.724 -0.545 "C3'" PRN 12 PRN "O3'" O3* O 0 1 N N N 21.119 20.974 -1.322 3.530 -0.310 -0.796 "O3'" PRN 13 PRN "C4'" C4* C 0 1 N N R 20.852 20.701 1.061 1.186 0.288 -1.147 "C4'" PRN 14 PRN "O4'" O4* O 0 1 N N N 19.977 21.697 1.637 0.104 0.349 -0.189 "O4'" PRN 15 PRN "C5'" C5* C 0 1 N N N 21.689 20.024 2.122 0.671 -0.202 -2.501 "C5'" PRN 16 PRN "O5'" O5* O 0 1 N N N 22.715 20.897 2.590 -0.303 0.714 -3.001 "O5'" PRN 17 PRN P P P 0 1 N N N 23.623 20.483 3.833 -0.799 0.139 -4.421 P PRN 18 PRN OP1 O1P O 0 1 N N N 24.846 21.326 3.828 -1.391 -1.204 -4.229 OP1 PRN 19 PRN OP2 O2P O 0 1 N N N 23.752 19.004 3.858 -1.906 1.128 -5.044 OP2 PRN 20 PRN OP3 O3P O 0 1 N Y N 22.741 20.904 5.105 0.453 0.034 -5.425 OP3 PRN 21 PRN H2 H2 H 0 1 N N N 14.908 23.521 0.964 1.125 1.609 6.130 H2 PRN 22 PRN H6 H6 H 0 1 N N N 16.411 26.864 2.977 -2.300 -0.736 5.930 H6 PRN 23 PRN H8 H8 H 0 1 N N N 21.055 24.929 2.035 -1.623 -1.282 0.990 H8 PRN 24 PRN "H1'" H1* H 0 1 N N N 19.160 22.561 -0.156 1.139 1.314 1.348 "H1'" PRN 25 PRN "H2'" 1H2* H 0 1 N N N 21.356 23.510 -0.778 1.560 -1.679 1.312 "H2'" PRN 26 PRN "H2''" 2H2* H 0 0 N N N 21.971 23.471 0.742 2.762 -0.368 1.527 "H2''" PRN 27 PRN "H3'" H3* H 0 1 N N N 22.725 21.204 -0.026 2.011 -1.720 -0.951 "H3'" PRN 28 PRN "HO3'" HO3* H 0 0 N Y N 21.348 20.059 -1.438 4.106 -0.961 -0.373 "HO3'" PRN 29 PRN "H4'" H4* H 0 1 N N N 20.296 19.846 0.608 1.656 1.266 -1.252 "H4'" PRN 30 PRN "H5'" 1H5* H 0 1 N N N 21.061 19.638 2.959 1.502 -0.268 -3.204 "H5'" PRN 31 PRN "H5''" 2H5* H 0 0 N N N 22.104 19.053 1.763 0.217 -1.186 -2.383 "H5''" PRN 32 PRN HOP2 2HOP H 0 0 N N N 24.293 18.757 4.598 -2.175 0.748 -5.891 HOP2 PRN 33 PRN HOP3 3HOP H 0 0 N N N 23.282 20.657 5.845 0.809 0.928 -5.522 HOP3 PRN 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRN N1 C2 SING Y N 1 PRN N1 C6 DOUB Y N 2 PRN C2 N3 DOUB Y N 3 PRN C2 H2 SING N N 4 PRN N3 C4 SING Y N 5 PRN C4 C5 DOUB Y N 6 PRN C4 N9 SING Y N 7 PRN C5 C6 SING Y N 8 PRN C5 N7 SING Y N 9 PRN C6 H6 SING N N 10 PRN N7 C8 DOUB Y N 11 PRN C8 N9 SING Y N 12 PRN C8 H8 SING N N 13 PRN N9 "C1'" SING N N 14 PRN "C1'" "C2'" SING N N 15 PRN "C1'" "O4'" SING N N 16 PRN "C1'" "H1'" SING N N 17 PRN "C2'" "C3'" SING N N 18 PRN "C2'" "H2'" SING N N 19 PRN "C2'" "H2''" SING N N 20 PRN "C3'" "O3'" SING N N 21 PRN "C3'" "C4'" SING N N 22 PRN "C3'" "H3'" SING N N 23 PRN "O3'" "HO3'" SING N N 24 PRN "C4'" "O4'" SING N N 25 PRN "C4'" "C5'" SING N N 26 PRN "C4'" "H4'" SING N N 27 PRN "C5'" "O5'" SING N N 28 PRN "C5'" "H5'" SING N N 29 PRN "C5'" "H5''" SING N N 30 PRN "O5'" P SING N N 31 PRN P OP1 DOUB N N 32 PRN P OP2 SING N N 33 PRN P OP3 SING N N 34 PRN OP2 HOP2 SING N N 35 PRN OP3 HOP3 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRN SMILES ACDLabs 10.04 "O=P(O)(O)OCC3OC(n2cnc1cncnc12)CC3O" PRN SMILES_CANONICAL CACTVS 3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3cncnc23" PRN SMILES CACTVS 3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2cnc3cncnc23" PRN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c2c(ncn1)n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O" PRN SMILES "OpenEye OEToolkits" 1.5.0 "c1c2c(ncn1)n(cn2)C3CC(C(O3)COP(=O)(O)O)O" PRN InChI InChI 1.03 "InChI=1S/C10H13N4O6P/c15-7-1-9(20-8(7)3-19-21(16,17)18)14-5-13-6-2-11-4-12-10(6)14/h2,4-5,7-9,15H,1,3H2,(H2,16,17,18)/t7-,8+,9+/m0/s1" PRN InChIKey InChI 1.03 OQIJGDJDESHELC-DJLDLDEBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRN "SYSTEMATIC NAME" ACDLabs 10.04 "9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purine" PRN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-purin-9-yl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PRN "Create component" 1999-07-08 RCSB PRN "Modify descriptor" 2011-06-04 RCSB #