data_PRP # _chem_comp.id PRP _chem_comp.name 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H13 O14 P3" _chem_comp.mon_nstd_parent_comp_id RIB _chem_comp.pdbx_synonyms ;ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID; 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribose; 1-O-pyrophosphono-5-O-phosphono-D-ribose; 1-O-pyrophosphono-5-O-phosphono-ribose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 390.070 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1TC2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 PRP "ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID" PDB ? 2 PRP 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribose PDB ? 3 PRP 1-O-pyrophosphono-5-O-phosphono-D-ribose PDB ? 4 PRP 1-O-pyrophosphono-5-O-phosphono-ribose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PRP C1 C1 C 0 1 N N R 41.016 41.804 51.870 1.414 -0.754 0.218 C1 PRP 1 PRP C2 C2 C 0 1 N N R 39.675 42.493 51.935 2.820 -0.609 -0.404 C2 PRP 2 PRP C3 C3 C 0 1 N N S 39.972 43.609 52.894 2.562 0.095 -1.754 C3 PRP 3 PRP C4 C4 C 0 1 N N R 40.929 42.976 53.839 1.030 0.291 -1.792 C4 PRP 4 PRP C5 C5 C 0 1 N N N 40.085 42.509 55.009 0.494 0.087 -3.210 C5 PRP 5 PRP O1 O1 O 0 1 N N N 41.983 42.485 51.008 1.147 0.334 1.104 O1 PRP 6 PRP O2 O2 O 0 1 N N N 39.296 43.083 50.680 3.658 0.195 0.428 O2 PRP 7 PRP O3 O3 O 0 1 N N N 40.666 44.709 52.333 3.230 1.357 -1.796 O3 PRP 8 PRP O4 O4 O 0 1 N N N 41.523 41.852 53.148 0.508 -0.725 -0.905 O4 PRP 9 PRP O5 O5 O 0 1 N N N 40.848 41.708 55.877 -0.929 0.203 -3.202 O5 PRP 10 PRP P P P 0 1 N N N 41.368 42.202 57.322 -1.423 -0.021 -4.718 P PRP 11 PRP O1P O1P O 0 1 N N N 40.251 42.900 57.990 -1.007 -1.364 -5.179 O1P PRP 12 PRP O2P O2P O 0 1 N N N 42.548 43.095 57.149 -3.027 0.096 -4.784 O2P PRP 13 PRP O3P O3P O 0 1 N N N 41.706 40.844 57.853 -0.764 1.099 -5.668 O3P PRP 14 PRP PA PA P 0 1 N N R 43.232 41.813 50.185 0.157 -0.225 2.244 PA PRP 15 PRP O1A O1A O 0 1 N N N 44.385 42.007 51.133 -1.092 -0.711 1.617 O1A PRP 16 PRP O2A O2A O 0 1 N N N 42.894 40.398 49.928 0.871 -1.437 3.027 O2A PRP 17 PRP O3A O3A O 0 1 N N N 43.293 42.678 48.941 -0.186 0.955 3.283 O3A PRP 18 PRP PB PB P 0 1 N N N 42.315 42.779 47.781 -1.175 0.329 4.389 PB PRP 19 PRP O1B O1B O 0 1 N N N 41.694 41.508 47.499 -0.498 -0.793 5.075 O1B PRP 20 PRP O2B O2B O 0 1 N N N 43.008 43.240 46.591 -1.562 1.461 5.465 O2B PRP 21 PRP O3B O3B O 0 1 N N N 41.257 43.786 48.012 -2.512 -0.208 3.671 O3B PRP 22 PRP H1 H1 H 0 1 N N N 40.865 40.778 51.459 1.330 -1.703 0.748 H1 PRP 23 PRP H2 H2 H 0 1 N N N 38.851 41.794 52.212 3.270 -1.589 -0.564 H2 PRP 24 PRP H3 H3 H 0 1 N N N 39.015 44.010 53.302 2.886 -0.535 -2.582 H3 PRP 25 PRP H4 H4 H 0 1 N N N 41.741 43.653 54.190 0.767 1.284 -1.426 H4 PRP 26 PRP H51 H51 H 0 1 N N N 39.608 43.363 55.544 0.916 0.845 -3.870 H51 PRP 27 PRP H52 H52 H 0 1 N N N 39.158 41.988 54.670 0.776 -0.902 -3.566 H52 PRP 28 PRP HO2 HO2 H 0 1 N Y N 38.451 43.516 50.720 3.785 -0.292 1.253 HO2 PRP 29 PRP HO3 HO3 H 0 1 N Y N 40.854 45.415 52.939 4.177 1.174 -1.740 HO3 PRP 30 PRP HOP2 HOP2 H 0 0 N N N 42.854 43.385 57.999 -3.280 -0.044 -5.706 HOP2 PRP 31 PRP HOP3 HOP3 H 0 0 N N N 42.012 41.134 58.703 -1.059 1.957 -5.335 HOP3 PRP 32 PRP HOA2 HOA2 H 0 0 N N N 43.617 40.008 49.451 1.679 -1.079 3.420 HOA2 PRP 33 PRP HOB2 HOB2 H 0 0 N N N 42.397 43.303 45.866 -2.153 1.046 6.108 HOB2 PRP 34 PRP HOB3 HOB3 H 0 0 N N N 40.646 43.849 47.287 -2.921 0.552 3.236 HOB3 PRP 35 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRP C1 C2 SING N N 1 PRP C1 O1 SING N N 2 PRP C1 O4 SING N N 3 PRP C1 H1 SING N N 4 PRP C2 C3 SING N N 5 PRP C2 O2 SING N N 6 PRP C2 H2 SING N N 7 PRP C3 C4 SING N N 8 PRP C3 O3 SING N N 9 PRP C3 H3 SING N N 10 PRP C4 C5 SING N N 11 PRP C4 O4 SING N N 12 PRP C4 H4 SING N N 13 PRP C5 O5 SING N N 14 PRP C5 H51 SING N N 15 PRP C5 H52 SING N N 16 PRP O1 PA SING N N 17 PRP O2 HO2 SING N N 18 PRP O3 HO3 SING N N 19 PRP O5 P SING N N 20 PRP P O1P DOUB N N 21 PRP P O2P SING N N 22 PRP P O3P SING N N 23 PRP O2P HOP2 SING N N 24 PRP O3P HOP3 SING N N 25 PRP PA O1A DOUB N N 26 PRP PA O2A SING N N 27 PRP PA O3A SING N N 28 PRP O2A HOA2 SING N N 29 PRP O3A PB SING N N 30 PRP PB O1B DOUB N N 31 PRP PB O2B SING N N 32 PRP PB O3B SING N N 33 PRP O2B HOB2 SING N N 34 PRP O3B HOB3 SING N N 35 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRP SMILES ACDLabs 10.04 "O=P(OC1OC(C(O)C1O)COP(=O)(O)O)(O)OP(=O)(O)O" PRP SMILES_CANONICAL CACTVS 3.341 "O[C@H]1[C@@H](O)[C@H](O[C@@H]1CO[P](O)(O)=O)O[P@](O)(=O)O[P](O)(O)=O" PRP SMILES CACTVS 3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)O[P](O)(=O)O[P](O)(O)=O" PRP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@H]([C@H]([C@H](O1)O[P@@](=O)(O)OP(=O)(O)O)O)O)OP(=O)(O)O" PRP SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(O1)OP(=O)(O)OP(=O)(O)O)O)O)OP(=O)(O)O" PRP InChI InChI 1.03 "InChI=1S/C5H13O14P3/c6-3-2(1-16-20(8,9)10)17-5(4(3)7)18-22(14,15)19-21(11,12)13/h2-7H,1H2,(H,14,15)(H2,8,9,10)(H2,11,12,13)/t2-,3-,4-,5-/m1/s1" PRP InChIKey InChI 1.03 PQGCEDQWHSBAJP-TXICZTDVSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRP "SYSTEMATIC NAME" ACDLabs 10.04 "1-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-5-O-phosphono-alpha-D-ribofuranose" PRP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl] phosphono hydrogen phosphate" PRP "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-Ribf1PO35PO3 # _pdbx_chem_comp_related.comp_id PRP _pdbx_chem_comp_related.related_comp_id RIB _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 PRP C1 RIB C1 "Carbohydrate core" 2 PRP C2 RIB C2 "Carbohydrate core" 3 PRP C3 RIB C3 "Carbohydrate core" 4 PRP C4 RIB C4 "Carbohydrate core" 5 PRP C5 RIB C5 "Carbohydrate core" 6 PRP O1 RIB O1 "Carbohydrate core" 7 PRP O2 RIB O2 "Carbohydrate core" 8 PRP O3 RIB O3 "Carbohydrate core" 9 PRP O4 RIB O4 "Carbohydrate core" 10 PRP O5 RIB O5 "Carbohydrate core" 11 PRP H1 RIB H1 "Carbohydrate core" 12 PRP H2 RIB H2 "Carbohydrate core" 13 PRP H3 RIB H3 "Carbohydrate core" 14 PRP H4 RIB H4 "Carbohydrate core" 15 PRP H51 RIB H51 "Carbohydrate core" 16 PRP H52 RIB H52 "Carbohydrate core" 17 PRP HO2 RIB HO2 "Carbohydrate core" 18 PRP HO3 RIB HO3 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support PRP "CARBOHYDRATE ISOMER" D PDB ? PRP "CARBOHYDRATE RING" furanose PDB ? PRP "CARBOHYDRATE ANOMER" alpha PDB ? PRP "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PRP "Create component" 1999-07-08 RCSB PRP "Modify descriptor" 2011-06-04 RCSB PRP "Other modification" 2020-07-03 RCSB PRP "Modify parent residue" 2020-07-17 RCSB PRP "Modify name" 2020-07-17 RCSB PRP "Modify synonyms" 2020-07-17 RCSB PRP "Modify internal type" 2020-07-17 RCSB PRP "Modify linking type" 2020-07-17 RCSB PRP "Modify leaving atom flag" 2020-07-17 RCSB ##