data_PRX # _chem_comp.id PRX _chem_comp.name "ADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H20 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "ADENOSINE-5'-PROPYLPHOSPHATE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-02-18 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 389.301 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PRX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1PG4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PRX "O2'" "O2'" O 0 1 N N N 75.834 125.742 85.435 2.714 2.974 0.506 "O2'" PRX 1 PRX "C2'" "C2'" C 0 1 N N R 76.098 125.535 84.061 1.878 2.119 -0.276 "C2'" PRX 2 PRX "C1'" "C1'" C 0 1 N N R 76.146 123.947 83.781 1.640 0.779 0.454 "C1'" PRX 3 PRX "O4'" "O4'" O 0 1 N N N 74.805 123.556 83.382 0.268 0.437 0.159 "O4'" PRX 4 PRX "C4'" "C4'" C 0 1 N N R 73.932 124.744 83.213 -0.461 1.681 0.244 "C4'" PRX 5 PRX "C5'" "C5'" C 0 1 N N N 73.061 124.590 81.950 -1.781 1.577 -0.522 "C5'" PRX 6 PRX "O5'" "O5'" O 0 1 N N N 72.096 123.543 82.256 -2.638 0.637 0.130 "O5'" PRX 7 PRX P P P 0 1 N N N 71.026 123.099 81.110 -4.114 0.278 -0.404 P PRX 8 PRX O1P O1P O 0 1 N N N 70.200 124.309 80.952 -4.034 -0.162 -1.815 O1P PRX 9 PRX O2P O2P O 0 1 N N N 70.282 121.943 81.686 -5.054 1.581 -0.301 O2P PRX 10 PRX O3P O3P O 0 1 N N N 71.836 122.742 79.870 -4.736 -0.905 0.493 O3P PRX 11 PRX C1P C1P C 0 1 N N N 72.701 121.564 79.750 -5.993 -1.521 0.205 C1P PRX 12 PRX C2P C2P C 0 1 N N N 73.562 121.492 78.507 -6.282 -2.602 1.249 C2P PRX 13 PRX C3P C3P C 0 1 N N N 74.540 122.638 78.457 -7.628 -3.260 0.942 C3P PRX 14 PRX "C3'" "C3'" C 0 1 N N S 74.932 126.064 83.102 0.464 2.726 -0.417 "C3'" PRX 15 PRX "O3'" "O3'" O 0 1 N N N 74.121 127.230 83.595 0.384 3.974 0.273 "O3'" PRX 16 PRX N9 N9 N 0 1 Y N N 77.094 123.637 82.674 2.545 -0.251 -0.063 N9 PRX 17 PRX C8 C8 C 0 1 Y N N 76.802 123.237 81.362 2.260 -1.159 -1.039 C8 PRX 18 PRX N7 N7 N 0 1 Y N N 77.843 123.006 80.536 3.292 -1.924 -1.250 N7 PRX 19 PRX C5 C5 C 0 1 Y N N 78.884 123.289 81.413 4.301 -1.556 -0.424 C5 PRX 20 PRX C4 C4 C 0 1 Y N N 78.450 123.675 82.713 3.836 -0.475 0.343 C4 PRX 21 PRX N3 N3 N 0 1 Y N N 79.208 124.016 83.788 4.649 0.080 1.236 N3 PRX 22 PRX C2 C2 C 0 1 Y N N 80.530 123.956 83.520 5.874 -0.372 1.401 C2 PRX 23 PRX N1 N1 N 0 1 Y N N 81.065 123.602 82.336 6.357 -1.383 0.701 N1 PRX 24 PRX C6 C6 C 0 1 Y N N 80.294 123.251 81.226 5.615 -2.006 -0.209 C6 PRX 25 PRX N6 N6 N 0 1 N N N 80.795 122.884 79.998 6.130 -3.063 -0.938 N6 PRX 26 PRX "H2'" "H2'" H 0 1 N N N 75.803 126.674 85.615 2.896 3.830 0.095 "H2'" PRX 27 PRX H1 H1 H 0 1 N N N 77.054 125.984 83.754 2.322 1.946 -1.257 H1 PRX 28 PRX "H1'" "H1'" H 0 1 N N N 76.450 123.432 84.704 1.778 0.902 1.528 "H1'" PRX 29 PRX "H4'" "H4'" H 0 1 N N N 73.286 124.875 84.094 -0.647 1.941 1.286 "H4'" PRX 30 PRX "H5'1" "H5'1" H 0 0 N N N 72.543 125.534 81.725 -2.265 2.554 -0.546 "H5'1" PRX 31 PRX "H5'2" "H5'2" H 0 0 N N N 73.682 124.299 81.090 -1.585 1.244 -1.541 "H5'2" PRX 32 PRX H2P H2P H 0 1 N N N 69.382 122.197 81.854 -5.152 1.925 0.598 H2P PRX 33 PRX H1P1 H1P1 H 0 0 N N N 73.370 121.548 80.623 -6.781 -0.768 0.234 H1P1 PRX 34 PRX H1P2 H1P2 H 0 0 N N N 72.058 120.672 79.765 -5.958 -1.973 -0.786 H1P2 PRX 35 PRX H2P1 H2P1 H 0 0 N N N 74.120 120.544 78.511 -5.494 -3.354 1.220 H2P1 PRX 36 PRX H2P2 H2P2 H 0 0 N N N 72.915 121.533 77.619 -6.317 -2.149 2.240 H2P2 PRX 37 PRX H3P1 H3P1 H 0 0 N N N 75.151 122.560 77.545 -7.594 -3.713 -0.050 H3P1 PRX 38 PRX H3P2 H3P2 H 0 0 N N N 73.989 123.590 78.449 -7.834 -4.030 1.685 H3P2 PRX 39 PRX H3P3 H3P3 H 0 0 N N N 75.194 122.601 79.341 -8.416 -2.508 0.970 H3P3 PRX 40 PRX "H3'" "H3'" H 0 1 N N N 75.288 126.196 82.070 0.206 2.853 -1.469 "H3'" PRX 41 PRX H2 H2 H 0 1 N N N 73.463 127.455 82.948 0.989 4.650 -0.063 H2 PRX 42 PRX H8 H8 H 0 1 N N N 75.783 123.118 81.026 1.317 -1.233 -1.560 H8 PRX 43 PRX H3 H3 H 0 1 N N N 81.212 124.212 84.318 6.509 0.102 2.135 H3 PRX 44 PRX HN61 HN61 H 0 0 N N N 81.794 122.908 80.025 5.583 -3.503 -1.607 HN61 PRX 45 PRX HN62 HN62 H 0 0 N N N 80.490 121.958 79.777 7.039 -3.364 -0.781 HN62 PRX 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRX "O2'" "C2'" SING N N 1 PRX "O2'" "H2'" SING N N 2 PRX "C2'" "C1'" SING N N 3 PRX "C2'" "C3'" SING N N 4 PRX "C2'" H1 SING N N 5 PRX "C1'" "O4'" SING N N 6 PRX "C1'" N9 SING N N 7 PRX "C1'" "H1'" SING N N 8 PRX "O4'" "C4'" SING N N 9 PRX "C4'" "C5'" SING N N 10 PRX "C4'" "C3'" SING N N 11 PRX "C4'" "H4'" SING N N 12 PRX "C5'" "O5'" SING N N 13 PRX "C5'" "H5'1" SING N N 14 PRX "C5'" "H5'2" SING N N 15 PRX "O5'" P SING N N 16 PRX P O1P DOUB N N 17 PRX P O2P SING N N 18 PRX P O3P SING N N 19 PRX O2P H2P SING N N 20 PRX O3P C1P SING N N 21 PRX C1P C2P SING N N 22 PRX C1P H1P1 SING N N 23 PRX C1P H1P2 SING N N 24 PRX C2P C3P SING N N 25 PRX C2P H2P1 SING N N 26 PRX C2P H2P2 SING N N 27 PRX C3P H3P1 SING N N 28 PRX C3P H3P2 SING N N 29 PRX C3P H3P3 SING N N 30 PRX "C3'" "O3'" SING N N 31 PRX "C3'" "H3'" SING N N 32 PRX "O3'" H2 SING N N 33 PRX N9 C8 SING Y N 34 PRX N9 C4 SING Y N 35 PRX C8 N7 DOUB Y N 36 PRX C8 H8 SING N N 37 PRX N7 C5 SING Y N 38 PRX C5 C4 DOUB Y N 39 PRX C5 C6 SING Y N 40 PRX C4 N3 SING Y N 41 PRX N3 C2 DOUB Y N 42 PRX C2 N1 SING Y N 43 PRX C2 H3 SING N N 44 PRX N1 C6 DOUB Y N 45 PRX C6 N6 SING N N 46 PRX N6 HN61 SING N N 47 PRX N6 HN62 SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRX SMILES ACDLabs 12.01 "OC1C(OC(COP(=O)(O)OCCC)C1O)n2cnc3c2ncnc3N" PRX InChI InChI 1.03 "InChI=1S/C13H20N5O7P/c1-2-3-23-26(21,22)24-4-7-9(19)10(20)13(25-7)18-6-17-8-11(14)15-5-16-12(8)18/h5-7,9-10,13,19-20H,2-4H2,1H3,(H,21,22)(H2,14,15,16)/t7-,9-,10-,13-/m1/s1" PRX InChIKey InChI 1.03 XAMXMSZRQHPMRX-QYVSTXNMSA-N PRX SMILES_CANONICAL CACTVS 3.385 "CCCO[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" PRX SMILES CACTVS 3.385 "CCCO[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" PRX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCO[P@@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" PRX SMILES "OpenEye OEToolkits" 1.7.6 "CCCOP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRX "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(R)-hydroxy(propoxy)phosphoryl]adenosine" PRX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl propyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PRX "Create component" 2003-02-18 RCSB PRX "Modify descriptor" 2011-06-04 RCSB PRX "Other modification" 2011-06-04 RCSB PRX "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id PRX _pdbx_chem_comp_synonyms.name "ADENOSINE-5'-PROPYLPHOSPHATE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##