data_PS1 # _chem_comp.id PS1 _chem_comp.name "1,2-DIDECANOYL-SN-GLYCERO-3-[PHOSPHO-L-SERINE]" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H49 N O10 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2004-08-02 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 566.642 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PS1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1TB1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PS1 O1 O1 O -1 1 N N N 11.623 29.573 9.739 -0.870 -3.544 0.888 O1 PS1 1 PS1 O2 O2 O 0 1 N N N 10.580 27.784 10.547 1.194 -3.333 2.323 O2 PS1 2 PS1 P1 P1 P 0 1 N N N 11.766 28.007 9.524 0.429 -2.741 1.118 P1 PS1 3 PS1 O3 O3 O 0 1 N N N 13.176 27.430 10.012 1.353 -2.826 -0.198 O3 PS1 4 PS1 C1 C1 C 0 1 N N N 13.208 26.254 10.812 1.545 -4.214 -0.479 C1 PS1 5 PS1 C2 C2 C 0 1 N N S 13.827 26.554 12.183 2.419 -4.366 -1.725 C2 PS1 6 PS1 C3 C3 C 0 1 N N N 13.238 27.804 12.802 2.723 -5.825 -1.950 C3 PS1 7 PS1 O4 O4 O 0 1 N N N 12.077 28.139 12.782 2.096 -6.453 -2.771 O4 PS1 8 PS1 O5 O5 O 0 1 N N N 14.179 28.542 13.403 3.690 -6.427 -1.240 O5 PS1 9 PS1 N1 N1 N 0 1 N N N 13.616 25.409 13.041 1.707 -3.828 -2.891 N1 PS1 10 PS1 O6 O6 O 0 1 N N N 11.449 27.503 8.043 0.063 -1.202 1.418 O6 PS1 11 PS1 C4 C4 C 0 1 N N N 12.543 27.259 7.164 -0.848 -1.202 2.519 C4 PS1 12 PS1 C5 C5 C 0 1 N N R 12.883 25.764 7.251 -1.238 0.238 2.857 C5 PS1 13 PS1 C6 C6 C 0 1 N N N 11.820 24.772 6.749 0.025 1.063 3.111 C6 PS1 14 PS1 O7 O7 O 0 1 N N N 12.034 24.509 5.381 0.911 0.957 1.965 O7 PS1 15 PS1 C7 C7 C 0 1 N N N 11.533 23.503 4.644 2.087 1.602 1.964 C7 PS1 16 PS1 O8 O8 O 0 1 N N N 11.715 23.475 3.449 2.410 2.272 2.916 O8 PS1 17 PS1 C8 C8 C 0 1 N N N 10.773 22.437 5.420 3.006 1.492 0.774 C8 PS1 18 PS1 C9 C9 C 0 1 N N N 11.294 21.008 5.188 4.270 2.317 1.028 C9 PS1 19 PS1 C10 C10 C 0 1 N N N 12.030 20.403 6.394 5.202 2.205 -0.180 C10 PS1 20 PS1 C11 C11 C 0 1 N N N 12.859 21.434 7.183 6.466 3.030 0.073 C11 PS1 21 PS1 C12 C12 C 0 1 N N N 14.039 20.815 7.949 7.399 2.918 -1.134 C12 PS1 22 PS1 C13 C13 C 0 1 N N N 15.125 21.849 8.279 8.662 3.742 -0.881 C13 PS1 23 PS1 C14 C14 C 0 1 N N N 16.244 21.908 7.224 9.595 3.631 -2.089 C14 PS1 24 PS1 C15 C15 C 0 1 N N N 15.785 22.195 5.781 10.859 4.455 -1.835 C15 PS1 25 PS1 C16 C16 C 0 1 N N N 15.506 20.929 4.949 11.791 4.343 -3.043 C16 PS1 26 PS1 O9 O9 O 0 1 N N N 14.194 25.459 6.819 -1.977 0.813 1.747 O9 PS1 27 PS1 C17 C17 C 0 1 N N N 14.963 25.939 5.821 -3.313 0.700 1.700 C17 PS1 28 PS1 O10 O10 O 0 1 N N N 16.076 25.497 5.640 -3.902 0.120 2.581 O10 PS1 29 PS1 C18 C18 C 0 1 N N N 14.413 27.039 4.931 -4.080 1.296 0.548 C18 PS1 30 PS1 C19 C19 C 0 1 N N N 14.808 28.454 5.384 -5.574 1.028 0.736 C19 PS1 31 PS1 C20 C20 C 0 1 N N N 15.282 29.367 4.241 -6.352 1.634 -0.434 C20 PS1 32 PS1 C21 C21 C 0 1 N N N 14.472 30.672 4.127 -7.847 1.365 -0.246 C21 PS1 33 PS1 C22 C22 C 0 1 N N N 13.069 30.479 3.530 -8.625 1.971 -1.416 C22 PS1 34 PS1 C23 C23 C 0 1 N N N 12.927 31.133 2.146 -10.119 1.702 -1.228 C23 PS1 35 PS1 C24 C24 C 0 1 N N N 12.074 32.414 2.156 -10.898 2.308 -2.398 C24 PS1 36 PS1 C25 C25 C 0 1 N N N 12.837 33.718 2.457 -12.392 2.040 -2.210 C25 PS1 37 PS1 C26 C26 C 0 1 N N N 12.073 34.754 3.300 -13.170 2.645 -3.379 C26 PS1 38 PS1 H1 H1 H 0 1 N N N 12.175 25.858 10.899 2.035 -4.692 0.370 H1 PS1 39 PS1 H2 H2 H 0 1 N N N 13.771 25.470 10.264 0.578 -4.687 -0.653 H2 PS1 40 PS1 H3 H3 H 0 1 N N N 14.914 26.699 12.104 3.351 -3.819 -1.584 H3 PS1 41 PS1 H4 H4 H 0 1 N N N 14.570 28.174 14.209 3.885 -7.363 -1.384 H4 PS1 42 PS1 H5 H5 H 0 1 N N N 14.495 25.074 13.423 2.271 -4.042 -3.700 H5 PS1 43 PS1 H6 H6 H 0 1 N N N 13.069 25.700 13.849 0.855 -4.362 -2.983 H6 PS1 44 PS1 H7 H7 H 0 1 N N N 12.267 27.574 6.137 -0.372 -1.662 3.385 H7 PS1 45 PS1 H8 H8 H 0 1 N N N 13.396 27.909 7.447 -1.741 -1.767 2.252 H8 PS1 46 PS1 H9 H9 H 0 1 N N N 12.977 25.554 8.326 -1.862 0.246 3.751 H9 PS1 47 PS1 H10 H10 H 0 1 N N N 10.787 25.157 6.878 0.533 0.686 3.998 H10 PS1 48 PS1 H11 H11 H 0 1 N N N 11.841 23.810 7.302 -0.247 2.107 3.264 H11 PS1 49 PS1 H12 H12 H 0 1 N N N 10.814 22.680 6.502 2.498 1.869 -0.113 H12 PS1 50 PS1 H13 H13 H 0 1 N N N 9.698 22.493 5.152 3.278 0.448 0.621 H13 PS1 51 PS1 H14 H14 H 0 1 N N N 11.968 21.002 4.306 4.778 1.940 1.915 H14 PS1 52 PS1 H15 H15 H 0 1 N N N 10.446 20.349 4.908 3.997 3.361 1.181 H15 PS1 53 PS1 H16 H16 H 0 1 N N N 11.297 19.918 7.069 4.694 2.582 -1.068 H16 PS1 54 PS1 H17 H17 H 0 1 N N N 12.690 19.581 6.049 5.475 1.161 -0.333 H17 PS1 55 PS1 H18 H18 H 0 1 N N N 12.198 21.973 7.894 6.974 2.653 0.961 H18 PS1 56 PS1 H19 H19 H 0 1 N N N 13.235 22.215 6.491 6.194 4.074 0.227 H19 PS1 57 PS1 H20 H20 H 0 1 N N N 13.674 20.342 8.884 6.891 3.295 -2.022 H20 PS1 58 PS1 H21 H21 H 0 1 N N N 14.477 19.984 7.358 7.671 1.874 -1.288 H21 PS1 59 PS1 H22 H22 H 0 1 N N N 15.564 21.625 9.274 9.170 3.365 0.007 H22 PS1 60 PS1 H23 H23 H 0 1 N N N 14.663 22.853 8.389 8.390 4.787 -0.728 H23 PS1 61 PS1 H24 H24 H 0 1 N N N 16.983 22.680 7.526 9.087 4.008 -2.976 H24 PS1 62 PS1 H25 H25 H 0 1 N N N 16.804 20.951 7.242 9.867 2.586 -2.242 H25 PS1 63 PS1 H26 H26 H 0 1 N N N 16.555 22.810 5.268 11.367 4.078 -0.948 H26 PS1 64 PS1 H27 H27 H 0 1 N N N 14.876 22.830 5.804 10.586 5.499 -1.682 H27 PS1 65 PS1 H28 H28 H 0 1 N N N 15.305 20.069 5.623 12.692 4.931 -2.862 H28 PS1 66 PS1 H29 H29 H 0 1 N N N 16.385 20.690 4.314 12.064 3.299 -3.196 H29 PS1 67 PS1 H30 H30 H 0 1 N N N 14.623 21.090 4.296 11.283 4.721 -3.930 H30 PS1 68 PS1 H31 H31 H 0 1 N N N 14.755 26.869 3.889 -3.905 2.372 0.513 H31 PS1 69 PS1 H32 H32 H 0 1 N N N 13.307 26.952 4.888 -3.744 0.844 -0.385 H32 PS1 70 PS1 H33 H33 H 0 1 N N N 15.604 28.385 6.153 -5.749 -0.047 0.770 H33 PS1 71 PS1 H34 H34 H 0 1 N N N 13.947 28.928 5.901 -5.910 1.481 1.669 H34 PS1 72 PS1 H35 H35 H 0 1 N N N 16.356 29.606 4.381 -6.178 2.709 -0.469 H35 PS1 73 PS1 H36 H36 H 0 1 N N N 15.234 28.814 3.280 -6.017 1.181 -1.367 H36 PS1 74 PS1 H37 H37 H 0 1 N N N 15.037 31.405 3.514 -8.021 0.290 -0.212 H37 PS1 75 PS1 H38 H38 H 0 1 N N N 14.384 31.141 5.130 -8.183 1.818 0.687 H38 PS1 76 PS1 H39 H39 H 0 1 N N N 12.836 29.396 3.459 -8.451 3.046 -1.450 H39 PS1 77 PS1 H40 H40 H 0 1 N N N 12.304 30.893 4.221 -8.289 1.518 -2.349 H40 PS1 78 PS1 H41 H41 H 0 1 N N N 12.491 30.400 1.434 -10.294 0.627 -1.193 H41 PS1 79 PS1 H42 H42 H 0 1 N N N 13.935 31.360 1.740 -10.455 2.155 -0.295 H42 PS1 80 PS1 H43 H43 H 0 1 N N N 11.563 32.513 1.176 -10.723 3.384 -2.432 H43 PS1 81 PS1 H44 H44 H 0 1 N N N 11.257 32.296 2.896 -10.562 1.855 -3.331 H44 PS1 82 PS1 H45 H45 H 0 1 N N N 13.141 34.188 1.497 -12.567 0.964 -2.175 H45 PS1 83 PS1 H46 H46 H 0 1 N N N 13.790 33.469 2.969 -12.728 2.492 -1.277 H46 PS1 84 PS1 H47 H47 H 0 1 N N N 11.178 34.287 3.758 -14.235 2.454 -3.245 H47 PS1 85 PS1 H48 H48 H 0 1 N N N 11.750 35.601 2.659 -12.996 3.721 -3.414 H48 PS1 86 PS1 H49 H49 H 0 1 N N N 12.729 35.144 4.108 -12.834 2.193 -4.312 H49 PS1 87 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PS1 O1 P1 SING N N 1 PS1 O2 P1 DOUB N N 2 PS1 P1 O3 SING N N 3 PS1 P1 O6 SING N N 4 PS1 O3 C1 SING N N 5 PS1 C1 C2 SING N N 6 PS1 C1 H1 SING N N 7 PS1 C1 H2 SING N N 8 PS1 C2 C3 SING N N 9 PS1 C2 N1 SING N N 10 PS1 C2 H3 SING N N 11 PS1 C3 O4 DOUB N N 12 PS1 C3 O5 SING N N 13 PS1 O5 H4 SING N N 14 PS1 N1 H5 SING N N 15 PS1 N1 H6 SING N N 16 PS1 O6 C4 SING N N 17 PS1 C4 C5 SING N N 18 PS1 C4 H7 SING N N 19 PS1 C4 H8 SING N N 20 PS1 C5 C6 SING N N 21 PS1 C5 O9 SING N N 22 PS1 C5 H9 SING N N 23 PS1 C6 O7 SING N N 24 PS1 C6 H10 SING N N 25 PS1 C6 H11 SING N N 26 PS1 O7 C7 SING N N 27 PS1 C7 O8 DOUB N N 28 PS1 C7 C8 SING N N 29 PS1 C8 C9 SING N N 30 PS1 C8 H12 SING N N 31 PS1 C8 H13 SING N N 32 PS1 C9 C10 SING N N 33 PS1 C9 H14 SING N N 34 PS1 C9 H15 SING N N 35 PS1 C10 C11 SING N N 36 PS1 C10 H16 SING N N 37 PS1 C10 H17 SING N N 38 PS1 C11 C12 SING N N 39 PS1 C11 H18 SING N N 40 PS1 C11 H19 SING N N 41 PS1 C12 C13 SING N N 42 PS1 C12 H20 SING N N 43 PS1 C12 H21 SING N N 44 PS1 C13 C14 SING N N 45 PS1 C13 H22 SING N N 46 PS1 C13 H23 SING N N 47 PS1 C14 C15 SING N N 48 PS1 C14 H24 SING N N 49 PS1 C14 H25 SING N N 50 PS1 C15 C16 SING N N 51 PS1 C15 H26 SING N N 52 PS1 C15 H27 SING N N 53 PS1 C16 H28 SING N N 54 PS1 C16 H29 SING N N 55 PS1 C16 H30 SING N N 56 PS1 O9 C17 SING N N 57 PS1 C17 O10 DOUB N N 58 PS1 C17 C18 SING N N 59 PS1 C18 C19 SING N N 60 PS1 C18 H31 SING N N 61 PS1 C18 H32 SING N N 62 PS1 C19 C20 SING N N 63 PS1 C19 H33 SING N N 64 PS1 C19 H34 SING N N 65 PS1 C20 C21 SING N N 66 PS1 C20 H35 SING N N 67 PS1 C20 H36 SING N N 68 PS1 C21 C22 SING N N 69 PS1 C21 H37 SING N N 70 PS1 C21 H38 SING N N 71 PS1 C22 C23 SING N N 72 PS1 C22 H39 SING N N 73 PS1 C22 H40 SING N N 74 PS1 C23 C24 SING N N 75 PS1 C23 H41 SING N N 76 PS1 C23 H42 SING N N 77 PS1 C24 C25 SING N N 78 PS1 C24 H43 SING N N 79 PS1 C24 H44 SING N N 80 PS1 C25 C26 SING N N 81 PS1 C25 H45 SING N N 82 PS1 C25 H46 SING N N 83 PS1 C26 H47 SING N N 84 PS1 C26 H48 SING N N 85 PS1 C26 H49 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PS1 SMILES ACDLabs 10.04 "O=C(OCC(OC(=O)CCCCCCCCC)COP([O-])(=O)OCC(N)C(=O)O)CCCCCCCCC" PS1 SMILES_CANONICAL CACTVS 3.341 "CCCCCCCCCC(=O)OC[C@H](CO[P]([O-])(=O)OC[C@H](N)C(O)=O)OC(=O)CCCCCCCCC" PS1 SMILES CACTVS 3.341 "CCCCCCCCCC(=O)OC[CH](CO[P]([O-])(=O)OC[CH](N)C(O)=O)OC(=O)CCCCCCCCC" PS1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCC(=O)OC[C@H](CO[P@](=O)([O-])OC[C@@H](C(=O)O)N)OC(=O)CCCCCCCCC" PS1 SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCC(=O)OCC(COP(=O)([O-])OCC(C(=O)O)N)OC(=O)CCCCCCCCC" PS1 InChI InChI 1.03 "InChI=1S/C26H50NO10P/c1-3-5-7-9-11-13-15-17-24(28)34-19-22(20-35-38(32,33)36-21-23(27)26(30)31)37-25(29)18-16-14-12-10-8-6-4-2/h22-23H,3-21,27H2,1-2H3,(H,30,31)(H,32,33)/p-1/t22-,23+/m1/s1" PS1 InChIKey InChI 1.03 LRIPXDCMGANCAE-PKTZIBPZSA-M # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PS1 "SYSTEMATIC NAME" ACDLabs 10.04 "O-({[(2R)-2,3-bis(decanoyloxy)propyl]oxy}phosphinato)-L-serine" PS1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S)-2-amino-3-hydroxy-3-oxo-propyl] [(2R)-2,3-di(decanoyloxy)propyl] phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PS1 "Create component" 2004-08-02 RCSB PS1 "Modify descriptor" 2011-06-04 RCSB #