data_PSF
#
_chem_comp.id PSF
_chem_comp.name "1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C18 H34 N O10 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms PHOSPHATIDYLSERINE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-01-12
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 455.437
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PSF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1DSY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PSF O2 O2 O 0 1 N N N 16.368 27.065 9.672 3.938 -8.474 5.875 O2 PSF 1
PSF O1 O1 O 0 1 N N N 17.213 28.475 7.934 4.810 -7.227 3.847 O1 PSF 2
PSF P P P 0 1 N N R 16.159 28.288 8.919 5.297 -8.205 5.042 P PSF 3
PSF O4 O4 O 0 1 N N N 14.879 28.218 8.222 6.454 -7.693 5.852 O4 PSF 4
PSF O3 O3 O 0 1 N N N 16.131 29.428 9.887 5.577 -9.625 4.316 O3 PSF 5
PSF C2 C2 C 0 1 N N N 15.253 26.397 10.307 2.801 -8.960 5.170 C2 PSF 6
PSF C3 C3 C 0 1 N N N 16.128 25.369 10.915 1.635 -9.144 6.134 C3 PSF 7
PSF O11 O11 O 0 1 N N N 16.440 26.182 12.219 1.348 -7.888 6.752 O11 PSF 8
PSF O12 O12 O 0 1 N N N 17.464 28.154 12.902 0.917 -6.964 4.683 O12 PSF 9
PSF C1 C1 C 0 1 N N N 17.492 26.922 12.386 1.000 -6.877 5.901 C1 PSF 10
PSF C4 C4 C 0 1 N N N 16.807 24.035 10.268 1.973 -10.143 7.233 C4 PSF 11
PSF C5 C5 C 0 1 N N N 16.802 22.098 8.494 1.016 -11.120 9.164 C5 PSF 12
PSF O51 O51 O 0 1 N N N 16.418 22.016 7.262 2.014 -11.791 9.391 O51 PSF 13
PSF O52 O52 O 0 1 N N N 16.626 23.461 8.803 0.855 -10.253 8.121 O52 PSF 14
PSF C6 C6 C 0 1 N N N 17.675 21.131 9.443 -0.231 -11.095 10.020 C6 PSF 15
PSF C7 C7 C 0 1 N N N 17.650 19.504 9.497 -0.120 -11.966 11.272 C7 PSF 16
PSF C13 C13 C 0 1 N N N 18.694 26.315 12.046 0.697 -5.634 6.709 C13 PSF 17
PSF C14 C14 C 0 1 N N N 18.759 26.417 10.610 1.910 -5.101 7.471 C14 PSF 18
PSF C15 C15 C 0 1 N N N 19.903 25.813 10.044 3.065 -4.717 6.540 C15 PSF 19
PSF N N N 0 1 N N N 20.035 28.623 9.257 5.881 -5.519 0.771 N PSF 20
PSF CA CA C 0 1 N N S 19.489 28.569 7.874 4.999 -5.951 1.828 CA PSF 21
PSF CB CB C 0 1 N N N 18.367 27.581 7.701 5.709 -6.870 2.811 CB PSF 22
PSF C C C 0 1 N N N 19.464 29.689 6.875 4.496 -4.707 2.531 C PSF 23
PSF OT1 OT1 O 0 1 N N N 18.794 29.504 5.845 5.152 -3.692 2.723 OT1 PSF 24
PSF OT2 OT2 O 0 1 N N N 20.102 30.717 7.123 3.223 -4.859 2.982 OT2 PSF 25
PSF C8 C8 C 0 1 N N N ? ? ? -1.394 -11.935 12.121 C8 PSF 26
PSF C9 C9 C 0 1 N N N ? ? ? -1.240 -12.787 13.381 C9 PSF 27
PSF C10 C10 C 0 1 N N N ? ? ? -2.485 -12.726 14.251 C10 PSF 28
PSF C16 C16 C 0 1 N N N ? ? ? 4.274 -4.221 7.333 C16 PSF 29
PSF C17 C17 C 0 1 N N N ? ? ? 5.439 -3.880 6.418 C17 PSF 30
PSF HO3 HO3 H 0 1 N N N 16.125 29.090 10.775 5.995 -10.346 4.833 HO3 PSF 31
PSF H21 1H2 H 0 1 N N N 14.676 27.008 11.016 2.561 -8.243 4.379 H21 PSF 32
PSF H22 2H2 H 0 1 N N N 14.407 26.071 9.684 3.086 -9.912 4.710 H22 PSF 33
PSF H31 1H3 H 0 1 N N N 16.060 24.273 10.848 0.726 -9.449 5.603 H31 PSF 34
PSF H41 1H4 H 0 1 N N N 17.887 24.232 10.339 2.836 -9.810 7.820 H41 PSF 35
PSF H42 2H4 H 0 1 N N N 16.259 23.265 10.831 2.174 -11.135 6.817 H42 PSF 36
PSF H61 1H6 H 0 1 N N N 18.715 21.369 9.175 -1.086 -11.422 9.418 H61 PSF 37
PSF H62 2H6 H 0 1 N N N 17.204 21.353 10.412 -0.396 -10.054 10.320 H62 PSF 38
PSF H71 1H7 H 0 1 N N N 18.581 19.244 8.972 0.717 -11.596 11.876 H71 PSF 39
PSF H72 2H7 H 0 1 N N N 17.363 19.422 10.556 0.118 -13.000 10.994 H72 PSF 40
PSF H131 1H13 H 0 0 N N N 19.545 26.828 12.519 -0.114 -5.852 7.412 H131 PSF 41
PSF H132 2H13 H 0 0 N N N 18.744 25.272 12.391 0.351 -4.868 6.005 H132 PSF 42
PSF H141 1H14 H 0 0 N N N 17.871 25.920 10.193 2.256 -5.882 8.160 H141 PSF 43
PSF H142 2H14 H 0 0 N N N 18.807 27.488 10.366 1.624 -4.238 8.084 H142 PSF 44
PSF H151 1H15 H 0 0 N N N 20.434 26.374 9.261 2.742 -3.936 5.842 H151 PSF 45
PSF H152 2H15 H 0 0 N N N 20.807 25.633 10.645 3.354 -5.587 5.937 H152 PSF 46
PSF H1 1H H 0 1 N N N 21.034 28.635 9.221 6.868 -5.462 0.953 H1 PSF 47
PSF H2 2H H 0 1 N N N 19.708 29.451 9.712 5.485 -5.095 -0.050 H2 PSF 48
PSF HA HA H 0 1 N N N 20.475 28.255 7.502 4.169 -6.458 1.325 HA PSF 49
PSF HB1 1HB H 0 1 N N N 18.415 26.748 8.418 6.567 -6.368 3.270 HB1 PSF 50
PSF HB2 2HB H 0 1 N N N 18.358 27.054 6.735 6.064 -7.785 2.323 HB2 PSF 51
PSF HXT HXT H 0 1 N N N 19.999 31.334 6.408 2.860 -4.093 3.476 HXT PSF 52
PSF H81 1H8 H 0 1 N N N ? ? ? -2.246 -12.303 11.536 H81 PSF 53
PSF H82 2H8 H 0 1 N N N ? ? ? -1.621 -10.900 12.404 H82 PSF 54
PSF H91 1H9 H 0 1 N N N ? ? ? -1.046 -13.830 13.104 H91 PSF 55
PSF H92 2H9 H 0 1 N N N ? ? ? -0.378 -12.440 13.962 H92 PSF 56
PSF H101 1H10 H 0 0 N N N ? ? ? -2.689 -11.700 14.573 H101 PSF 57
PSF H102 2H10 H 0 0 N N N ? ? ? -3.361 -13.097 13.709 H102 PSF 58
PSF H103 3H10 H 0 0 N N N ? ? ? -2.353 -13.343 15.146 H103 PSF 59
PSF H161 1H16 H 0 0 N N N ? ? ? 3.999 -3.331 7.911 H161 PSF 60
PSF H162 2H16 H 0 0 N N N ? ? ? 4.591 -4.988 8.048 H162 PSF 61
PSF H171 1H17 H 0 0 N N N ? ? ? 5.760 -4.758 5.848 H171 PSF 62
PSF H172 2H17 H 0 0 N N N ? ? ? 5.165 -3.092 5.710 H172 PSF 63
PSF H173 3H17 H 0 0 N N N ? ? ? 6.292 -3.527 7.006 H173 PSF 64
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PSF O2 P SING N N 1
PSF O2 C2 SING N N 2
PSF O1 P SING N N 3
PSF O1 CB SING N N 4
PSF P O4 DOUB N N 5
PSF P O3 SING N N 6
PSF O3 HO3 SING N N 7
PSF C2 C3 SING N N 8
PSF C2 H21 SING N N 9
PSF C2 H22 SING N N 10
PSF C3 O11 SING N N 11
PSF C3 C4 SING N N 12
PSF C3 H31 SING N N 13
PSF O11 C1 SING N N 14
PSF O12 C1 DOUB N N 15
PSF C1 C13 SING N N 16
PSF C4 O52 SING N N 17
PSF C4 H41 SING N N 18
PSF C4 H42 SING N N 19
PSF C5 O51 DOUB N N 20
PSF C5 O52 SING N N 21
PSF C5 C6 SING N N 22
PSF C6 C7 SING N N 23
PSF C6 H61 SING N N 24
PSF C6 H62 SING N N 25
PSF C7 C8 SING N N 26
PSF C7 H71 SING N N 27
PSF C7 H72 SING N N 28
PSF C13 C14 SING N N 29
PSF C13 H131 SING N N 30
PSF C13 H132 SING N N 31
PSF C14 C15 SING N N 32
PSF C14 H141 SING N N 33
PSF C14 H142 SING N N 34
PSF C15 C16 SING N N 35
PSF C15 H151 SING N N 36
PSF C15 H152 SING N N 37
PSF N CA SING N N 38
PSF N H1 SING N N 39
PSF N H2 SING N N 40
PSF CA CB SING N N 41
PSF CA C SING N N 42
PSF CA HA SING N N 43
PSF CB HB1 SING N N 44
PSF CB HB2 SING N N 45
PSF C OT1 DOUB N N 46
PSF C OT2 SING N N 47
PSF OT2 HXT SING N N 48
PSF C8 C9 SING N N 49
PSF C8 H81 SING N N 50
PSF C8 H82 SING N N 51
PSF C9 C10 SING N N 52
PSF C9 H91 SING N N 53
PSF C9 H92 SING N N 54
PSF C10 H101 SING N N 55
PSF C10 H102 SING N N 56
PSF C10 H103 SING N N 57
PSF C16 C17 SING N N 58
PSF C16 H161 SING N N 59
PSF C16 H162 SING N N 60
PSF C17 H171 SING N N 61
PSF C17 H172 SING N N 62
PSF C17 H173 SING N N 63
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PSF SMILES ACDLabs 10.04 "O=C(OC(COP(=O)(OCC(C(=O)O)N)O)COC(=O)CCCCC)CCCCC"
PSF SMILES_CANONICAL CACTVS 3.341 "CCCCCC(=O)OC[C@H](CO[P@](O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCCCC"
PSF SMILES CACTVS 3.341 "CCCCCC(=O)OC[CH](CO[P](O)(=O)OC[CH](N)C(O)=O)OC(=O)CCCCC"
PSF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCC(=O)OCC(CO[P@@](=O)(O)OC[C@@H](C(=O)O)N)OC(=O)CCCCC"
PSF SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCC(=O)OCC(COP(=O)(O)OCC(C(=O)O)N)OC(=O)CCCCC"
PSF InChI InChI 1.03 "InChI=1S/C18H34NO10P/c1-3-5-7-9-16(20)26-11-14(29-17(21)10-8-6-4-2)12-27-30(24,25)28-13-15(19)18(22)23/h14-15H,3-13,19H2,1-2H3,(H,22,23)(H,24,25)/t14-,15+/m1/s1"
PSF InChIKey InChI 1.03 MIQYPPGTNIFAPO-CABCVRRESA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PSF "SYSTEMATIC NAME" ACDLabs 10.04 "O-[(S)-{[(2R)-2,3-bis(hexanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine"
PSF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-[2,3-di(hexanoyloxy)propoxy-hydroxy-phosphoryl]oxy-propanoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PSF "Create component" 2000-01-12 EBI
PSF "Modify descriptor" 2011-06-04 RCSB
PSF "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id PSF
_pdbx_chem_comp_synonyms.name PHOSPHATIDYLSERINE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##