data_PSG # _chem_comp.id PSG _chem_comp.name "4-nitrophenyl 1-thio-beta-D-glucopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C12 H15 N O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;PARA-NITROPHENYL 1-THIO-BETA-D-GLUCOPYRANOSIDE; 4-nitrophenyl 1-thio-beta-D-glucoside; 4-nitrophenyl 1-thio-D-glucoside; 4-nitrophenyl 1-thio-glucoside ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-05-03 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 317.315 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PSG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1E1F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 PSG "PARA-NITROPHENYL 1-THIO-BETA-D-GLUCOPYRANOSIDE" PDB ? 2 PSG "4-nitrophenyl 1-thio-beta-D-glucoside" PDB ? 3 PSG "4-nitrophenyl 1-thio-D-glucoside" PDB ? 4 PSG "4-nitrophenyl 1-thio-glucoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PSG C7 C7 C 0 1 Y N N 23.838 -34.249 113.335 0.766 -3.065 -5.372 C7 PSG 1 PSG C8 C8 C 0 1 Y N N 24.807 -33.959 112.383 1.113 -2.629 -6.651 C8 PSG 2 PSG C9 C9 C 0 1 Y N N 25.773 -34.919 112.048 2.433 -2.280 -6.934 C9 PSG 3 PSG C10 C10 C 0 1 Y N N 25.764 -36.190 112.680 3.407 -2.367 -5.939 C10 PSG 4 PSG C11 C11 C 0 1 Y N N 24.782 -36.477 113.639 3.060 -2.803 -4.660 C11 PSG 5 PSG C12 C12 C 0 1 Y N N 23.815 -35.502 113.969 1.735 -3.157 -4.360 C12 PSG 6 PSG N1 N1 N 1 1 N N N 26.820 -34.606 111.023 2.784 -1.838 -8.227 N1 PSG 7 PSG O11 O11 O 0 1 N N N 27.805 -35.585 110.682 1.841 -1.738 -9.241 O11 PSG 8 PSG O12 O12 O -1 1 N N N 26.836 -33.326 110.384 4.086 -1.476 -8.541 O12 PSG 9 PSG S1 S1 S 0 1 N N N 22.514 -35.934 115.284 1.295 -3.707 -2.742 S1 PSG 10 PSG C1 C1 C 0 1 N N S 23.152 -36.084 117.080 0.066 -2.421 -2.313 C1 PSG 11 PSG C2 C2 C 0 1 N N R 22.230 -36.525 118.227 -0.494 -2.673 -0.908 C2 PSG 12 PSG C3 C3 C 0 1 N N S 22.939 -37.551 119.147 -1.434 -1.539 -0.485 C3 PSG 13 PSG C4 C4 C 0 1 N N S 24.221 -37.987 118.489 -0.802 -0.169 -0.730 C4 PSG 14 PSG C5 C5 C 0 1 N N R 25.127 -36.766 118.342 -0.254 -0.072 -2.154 C5 PSG 15 PSG C6 C6 C 0 1 N N N 26.488 -37.093 117.878 0.483 1.243 -2.388 C6 PSG 16 PSG O2 O2 O 0 1 N N N 21.855 -35.530 118.940 -1.226 -3.898 -0.906 O2 PSG 17 PSG O3 O3 O 0 1 N N N 22.076 -38.691 119.273 -1.716 -1.651 0.911 O3 PSG 18 PSG O4 O4 O 0 1 N N N 24.874 -38.961 119.292 -1.784 0.845 -0.533 O4 PSG 19 PSG O5 O5 O 0 1 N N N 24.518 -35.840 117.440 0.673 -1.132 -2.392 O5 PSG 20 PSG O6 O6 O 0 1 N N N 26.492 -37.988 116.756 0.970 1.258 -3.717 O6 PSG 21 PSG H7 H7 H 0 1 N N N 23.085 -33.483 113.587 -0.269 -3.331 -5.169 H7 PSG 22 PSG H8 H8 H 0 1 N N N 24.809 -32.969 111.894 0.347 -2.564 -7.419 H8 PSG 23 PSG H10 H10 H 0 1 N N N 26.518 -36.953 112.426 4.439 -2.097 -6.149 H10 PSG 24 PSG H11 H11 H 0 1 N N N 24.770 -37.464 114.131 3.832 -2.864 -3.898 H11 PSG 25 PSG H1 H1 H 0 1 N N N 22.859 -35.492 116.181 -0.728 -2.496 -3.067 H1 PSG 26 PSG H2 H2 H 0 1 N N N 21.336 -36.995 117.754 0.312 -2.764 -0.169 H2 PSG 27 PSG H3 H3 H 0 1 N N N 23.158 -37.104 120.144 -2.399 -1.621 -0.999 H3 PSG 28 PSG H4 H4 H 0 1 N N N 23.999 -38.431 117.490 -0.004 0.002 0.003 H4 PSG 29 PSG H5 H5 H 0 1 N N N 25.242 -36.320 119.357 -1.068 -0.125 -2.888 H5 PSG 30 PSG H61 H62 H 0 1 N N N 27.066 -36.166 117.652 1.321 1.328 -1.696 H61 PSG 31 PSG H62 H61 H 0 1 N N N 27.108 -37.495 118.712 -0.198 2.082 -2.244 H62 PSG 32 PSG HO2 H2O1 H 0 1 N Y N 21.284 -35.802 119.649 -1.379 -4.128 -1.835 HO2 PSG 33 PSG HO3 H3O1 H 0 1 N Y N 22.510 -39.319 119.837 -2.058 -0.788 1.190 HO3 PSG 34 PSG HO4 H4O1 H 0 1 N Y N 25.683 -39.236 118.876 -1.781 1.392 -1.334 HO4 PSG 35 PSG HO6 H6O1 H 0 1 N Y N 27.368 -38.198 116.457 1.861 0.870 -3.699 HO6 PSG 36 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PSG C7 C8 DOUB Y N 1 PSG C7 C12 SING Y N 2 PSG C7 H7 SING N N 3 PSG C8 C9 SING Y N 4 PSG C8 H8 SING N N 5 PSG C9 C10 DOUB Y N 6 PSG C9 N1 SING N N 7 PSG C10 C11 SING Y N 8 PSG C10 H10 SING N N 9 PSG C11 C12 DOUB Y N 10 PSG C11 H11 SING N N 11 PSG C12 S1 SING N N 12 PSG N1 O11 DOUB N N 13 PSG N1 O12 SING N N 14 PSG S1 C1 SING N N 15 PSG C1 C2 SING N N 16 PSG C1 O5 SING N N 17 PSG C1 H1 SING N N 18 PSG C2 C3 SING N N 19 PSG C2 O2 SING N N 20 PSG C2 H2 SING N N 21 PSG C3 C4 SING N N 22 PSG C3 O3 SING N N 23 PSG C3 H3 SING N N 24 PSG C4 C5 SING N N 25 PSG C4 O4 SING N N 26 PSG C4 H4 SING N N 27 PSG C5 C6 SING N N 28 PSG C5 O5 SING N N 29 PSG C5 H5 SING N N 30 PSG C6 O6 SING N N 31 PSG C6 H61 SING N N 32 PSG C6 H62 SING N N 33 PSG O2 HO2 SING N N 34 PSG O3 HO3 SING N N 35 PSG O4 HO4 SING N N 36 PSG O6 HO6 SING N N 37 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PSG SMILES ACDLabs 10.04 "[O-][N+](=O)c2ccc(SC1OC(C(O)C(O)C1O)CO)cc2" PSG SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@@H](Sc2ccc(cc2)[N+]([O-])=O)[C@H](O)[C@@H](O)[C@@H]1O" PSG SMILES CACTVS 3.341 "OC[CH]1O[CH](Sc2ccc(cc2)[N+]([O-])=O)[CH](O)[CH](O)[CH]1O" PSG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1[N+](=O)[O-])SC2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O" PSG SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1[N+](=O)[O-])SC2C(C(C(C(O2)CO)O)O)O" PSG InChI InChI 1.03 "InChI=1S/C12H15NO7S/c14-5-8-9(15)10(16)11(17)12(20-8)21-7-3-1-6(2-4-7)13(18)19/h1-4,8-12,14-17H,5H2/t8-,9-,10+,11-,12+/m1/s1" PSG InChIKey InChI 1.03 IXFOBQXJWRLXMD-ZIQFBCGOSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PSG "SYSTEMATIC NAME" ACDLabs 10.04 "4-nitrophenyl 1-thio-beta-D-glucopyranoside" PSG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3S,4S,5R)-2-(hydroxymethyl)-6-(4-nitrophenyl)sulfanyl-oxane-3,4,5-triol" PSG "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 para-nitrophenyl-1-thio-b-D-glucopyranoside # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support PSG "CARBOHYDRATE ISOMER" D PDB ? PSG "CARBOHYDRATE RING" pyranose PDB ? PSG "CARBOHYDRATE ANOMER" beta PDB ? PSG "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PSG "Create component" 2000-05-03 EBI PSG "Modify descriptor" 2011-06-04 RCSB PSG "Other modification" 2020-07-03 RCSB PSG "Modify name" 2020-07-17 RCSB PSG "Modify synonyms" 2020-07-17 RCSB PSG "Modify internal type" 2020-07-17 RCSB PSG "Modify linking type" 2020-07-17 RCSB PSG "Modify atom id" 2020-07-17 RCSB PSG "Modify component atom id" 2020-07-17 RCSB PSG "Modify leaving atom flag" 2020-07-17 RCSB ##