data_PSI
#
_chem_comp.id PSI
_chem_comp.name "methyl N-{(4S,5S)-5-[(L-alanyl-L-alanyl)amino]-4-hydroxy-6-phenylhexanoyl}-L-valyl-L-valinate"
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H47 N5 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "SKF 107457"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces GLI
_chem_comp.formula_weight 577.713
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PSI
_chem_comp.pdbx_model_coordinates_details "not provided"
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1HEG
_chem_comp.pdbx_subcomponent_list "ALA ALA FOG VAL VME"
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PSI N N1 N 0 1 N N N -13.823 14.474 35.207 -7.591 5.131 0.413 N ALA 1
PSI CA C1 C 0 1 N N S -12.564 14.209 34.566 -7.273 3.770 0.867 CA ALA 2
PSI C C2 C 0 1 N N N -12.322 15.096 33.343 -6.204 3.183 -0.019 C ALA 3
PSI O O1 O 0 1 N N N -13.038 15.239 32.375 -6.007 3.648 -1.121 O ALA 4
PSI CB C3 C 0 1 N N N -12.250 12.742 34.372 -8.529 2.901 0.795 CB ALA 5
PSI N1 N2 N 0 1 N N N -11.164 15.769 33.436 -5.467 2.141 0.415 N ALA 6
PSI CA1 C4 C 0 1 N N S -10.598 16.690 32.518 -4.428 1.570 -0.446 CA ALA 7
PSI C1 C5 C 0 1 N N N -10.514 16.113 31.120 -4.188 0.134 -0.058 C ALA 8
PSI O1 O3 O 0 1 N N N -9.853 15.141 30.780 -4.822 -0.364 0.848 O ALA 9
PSI CB1 C6 C 0 1 N N N -9.262 17.187 33.108 -3.133 2.367 -0.279 CB ALA 10
PSI C3 C18 C 0 1 N N N -8.183 17.817 26.360 1.811 -1.107 0.364 C FOG 11
PSI O2 O6 O 0 1 N N N -7.470 16.849 26.696 1.425 -0.179 1.044 O1 FOG 12
PSI CA3 C17 C 0 1 N N N -8.605 18.826 27.398 0.813 -1.990 -0.340 CA1 FOG 13
PSI CM C16 C 0 1 N N N -9.405 18.196 28.546 -0.605 -1.504 -0.033 CM FOG 14
PSI C2 C8 C 0 1 N N S -10.818 17.753 28.010 -1.617 -2.401 -0.747 CH FOG 15
PSI OS O5 O 0 1 N N N -11.697 18.822 28.249 -1.466 -2.258 -2.161 OH FOG 16
PSI CA2 C7 C 0 1 N N S -11.284 16.497 28.779 -3.035 -1.994 -0.342 CA FOG 17
PSI N2 N3 N 0 1 N N N -11.234 16.802 30.197 -3.268 -0.598 -0.719 N FOG 18
PSI CB2 C9 C 0 1 N N N -12.670 16.079 28.322 -4.048 -2.891 -1.056 CB FOG 19
PSI CG C10 C 0 1 Y N N -13.432 14.971 29.048 -5.436 -2.572 -0.565 CG FOG 20
PSI CD1 C11 C 0 1 Y N N -13.076 13.629 28.983 -6.190 -1.605 -1.203 CD1 FOG 21
PSI CD2 C12 C 0 1 Y N N -14.560 15.373 29.807 -5.958 -3.251 0.521 CD2 FOG 22
PSI CE1 C13 C 0 1 Y N N -13.818 12.638 29.661 -7.464 -1.313 -0.752 CE1 FOG 23
PSI CE2 C14 C 0 1 Y N N -15.300 14.380 30.483 -7.231 -2.958 0.972 CE2 FOG 24
PSI CZ C15 C 0 1 Y N N -14.917 13.043 30.412 -7.983 -1.988 0.336 CZ FOG 25
PSI N4 N5 N 0 1 N N N -8.585 17.971 25.103 3.131 -1.347 0.238 N VAL 26
PSI CA4 C19 C 0 1 N N S -8.253 17.023 24.068 4.100 -0.488 0.922 CA VAL 27
PSI C4 C20 C 0 1 N N N -7.312 17.705 23.054 5.417 -0.534 0.190 C VAL 28
PSI O3 O8 O 0 1 N N N -7.544 18.799 22.596 5.677 -1.474 -0.531 O VAL 29
PSI CB3 C21 C 0 1 N N N -9.457 16.377 23.387 4.297 -0.982 2.356 CB VAL 30
PSI CG1 C22 C 0 1 N N N -9.264 14.902 23.055 2.995 -0.804 3.140 CG1 VAL 31
PSI CG2 C23 C 0 1 N N N -10.739 16.533 24.224 4.682 -2.463 2.337 CG2 VAL 32
PSI N5 N6 N 0 1 N N N -6.277 16.910 22.755 6.304 0.470 0.336 N VME 33
PSI CA5 C24 C 0 1 N N S -5.196 17.143 21.863 7.539 0.477 -0.453 CA VME 34
PSI C5 C25 C 0 1 N N N -4.253 18.199 22.473 8.593 1.274 0.271 C VME 35
PSI O4 O10 O 0 1 N N N -4.434 18.654 23.600 8.340 1.784 1.336 O VME 36
PSI CB4 C26 C 0 1 N N N -5.589 17.486 20.437 7.268 1.111 -1.819 CB VME 37
PSI CG11 C27 C 0 0 N N N -7.059 17.853 20.200 8.557 1.118 -2.642 CG1 VME 38
PSI CG21 C28 C 0 0 N N N -4.672 18.535 19.802 6.198 0.302 -2.554 CG2 VME 39
PSI C6 C29 C 0 1 N N N -3.563 18.447 20.278 10.780 2.198 0.485 CM VME 40
PSI O5 O12 O 0 1 N N N -3.172 18.600 21.652 9.814 1.417 -0.268 O2 VME 41
PSI H H1 H 0 1 N N N -13.929 13.869 35.996 -7.927 5.125 -0.539 H ALA 42
PSI H2 H2 H 0 1 N Y N -13.848 15.426 35.511 -8.259 5.570 1.029 H2 ALA 43
PSI HA H3 H 0 1 N N N -11.796 14.518 35.291 -6.913 3.805 1.895 HA ALA 44
PSI HB1 H4 H 0 1 N N N -11.273 12.638 33.877 -8.888 2.866 -0.234 HB1 ALA 45
PSI HB2 H5 H 0 1 N N N -12.220 12.241 35.351 -8.293 1.891 1.131 HB2 ALA 46
PSI HB3 H6 H 0 1 N N N -13.029 12.280 33.747 -9.302 3.326 1.435 HB3 ALA 47
PSI H1 H8 H 0 1 N N N -10.629 15.598 34.263 -5.625 1.769 1.297 H ALA 48
PSI HA1 H10 H 0 1 N N N -11.246 17.569 32.385 -4.752 1.617 -1.486 HA ALA 49
PSI HB11 H11 H 0 0 N N N -8.799 17.905 32.415 -2.809 2.320 0.761 HB1 ALA 50
PSI HB21 H12 H 0 0 N N N -9.448 17.678 34.074 -2.360 1.942 -0.919 HB2 ALA 51
PSI HB31 H13 H 0 0 N N N -8.586 16.332 33.255 -3.306 3.406 -0.559 HB3 ALA 52
PSI HA3 H33 H 0 1 N N N -7.701 19.290 27.819 0.929 -3.017 0.008 HA1 FOG 53
PSI HM2 H28 H 0 1 N N N -9.532 18.932 29.354 -0.720 -0.478 -0.380 HM FOG 54
PSI HA2 H17 H 0 1 N N N -10.624 15.641 28.575 -3.150 -2.103 0.737 HA FOG 55
PSI H3 H15 H 0 1 N N N -11.772 17.581 30.520 -2.761 -0.199 -1.443 H FOG 56
PSI HB12 H20 H 0 0 N N N -13.298 16.979 28.404 -3.993 -2.716 -2.131 HB2 FOG 57
PSI HB22 H21 H 0 0 N N N -12.553 15.733 27.284 -3.819 -3.936 -0.847 HB3 FOG 58
PSI HD1 H22 H 0 1 N N N -12.214 13.338 28.402 -5.784 -1.078 -2.054 HD1 FOG 59
PSI HD2 H23 H 0 1 N N N -14.846 16.413 29.866 -5.370 -4.009 1.016 HD2 FOG 60
PSI HE1 H24 H 0 1 N N N -13.541 11.596 29.599 -8.053 -0.557 -1.251 HE1 FOG 61
PSI HE2 H25 H 0 1 N N N -16.170 14.659 31.060 -7.639 -3.488 1.820 HE2 FOG 62
PSI HZ H26 H 0 1 N N N -15.487 12.302 30.953 -8.978 -1.759 0.689 HZ FOG 63
PSI HC H18 H 0 1 N N N -10.786 17.509 26.938 -1.444 -3.440 -0.467 HCH FOG 64
PSI HOS H19 H 0 1 N N N -11.401 19.588 27.772 -1.607 -1.357 -2.482 HO1 FOG 65
PSI HM3 H29 H 0 1 N N N -8.866 17.319 28.933 -0.778 -1.546 1.043 HM1 FOG 66
PSI HA31 HA3 H 0 0 N N N -9.236 19.583 26.910 0.987 -1.949 -1.415 HA2 FOG 67
PSI H5 H35 H 0 1 N N N -9.136 18.771 24.867 3.439 -2.088 -0.306 H VAL 68
PSI HA4 H37 H 0 1 N N N -7.742 16.177 24.551 3.730 0.537 0.939 HA VAL 69
PSI HB H38 H 0 1 N N N -9.558 16.922 22.437 5.090 -0.407 2.834 HB VAL 70
PSI HG11 H39 H 0 0 N N N -10.171 14.513 22.569 2.202 -1.380 2.663 HG11 VAL 71
PSI HG12 H40 H 0 0 N N N -8.407 14.789 22.375 3.135 -1.157 4.162 HG12 VAL 72
PSI HG13 H41 H 0 0 N N N -9.074 14.340 23.981 2.721 0.250 3.154 HG13 VAL 73
PSI HG21 H42 H 0 0 N N N -11.580 16.056 23.700 5.650 -2.580 1.849 HG21 VAL 74
PSI HG22 H43 H 0 0 N N N -10.598 16.053 25.204 4.743 -2.836 3.359 HG22 VAL 75
PSI HG23 H44 H 0 0 N N N -10.956 17.602 24.367 3.928 -3.027 1.788 HG23 VAL 76
PSI H6 H46 H 0 1 N N N -6.263 16.028 23.226 6.126 1.188 0.963 HN1 VME 77
PSI HA5 H48 H 0 1 N N N -4.671 16.182 21.754 7.888 -0.547 -0.590 HA VME 78
PSI HB4 H49 H 0 1 N N N -5.450 16.522 19.926 6.919 2.135 -1.681 HB VME 79
PSI HG14 H50 H 0 0 N N N -7.214 18.079 19.135 8.906 0.095 -2.780 HG11 VME 80
PSI HG15 H51 H 0 0 N N N -7.699 17.008 20.493 8.364 1.570 -3.615 HG12 VME 81
PSI HG16 H52 H 0 0 N N N -7.318 18.736 20.803 9.320 1.695 -2.119 HG13 VME 82
PSI HG24 H54 H 0 0 N N N -5.006 18.741 18.774 5.279 0.297 -1.967 HG21 VME 83
PSI HG25 H55 H 0 0 N N N -4.712 19.462 20.393 6.004 0.754 -3.527 HG22 VME 84
PSI HG26 H60 H 0 0 N N N -3.640 18.156 19.783 6.546 -0.722 -2.691 HG23 VME 85
PSI H22 H58 H 0 1 N N N -2.734 18.754 19.624 10.400 3.210 0.623 HMC1 VME 86
PSI H31 H59 H 0 1 N N N -3.812 17.394 20.083 10.942 1.735 1.458 HMC2 VME 87
PSI H7 H61 H 0 1 N N N -4.442 19.076 20.075 11.722 2.235 -0.061 HMC3 VME 88
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PSI N CA SING N N 1
PSI N H SING N N 2
PSI N H2 SING N N 3
PSI CA C SING N N 4
PSI CA CB SING N N 5
PSI CA HA SING N N 6
PSI C O DOUB N N 7
PSI CB HB1 SING N N 8
PSI CB HB2 SING N N 9
PSI CB HB3 SING N N 10
PSI N1 CA1 SING N N 11
PSI N1 H1 SING N N 12
PSI CA1 C1 SING N N 13
PSI CA1 CB1 SING N N 14
PSI CA1 HA1 SING N N 15
PSI C1 O1 DOUB N N 16
PSI CB1 HB11 SING N N 17
PSI CB1 HB21 SING N N 18
PSI CB1 HB31 SING N N 19
PSI N2 CA2 SING N N 20
PSI N2 H3 SING N N 21
PSI CA2 C2 SING N N 22
PSI CA2 CB2 SING N N 23
PSI CA2 HA2 SING N N 24
PSI C2 OS SING N N 25
PSI C2 CM SING N N 26
PSI C2 HC SING N N 27
PSI OS HOS SING N N 28
PSI CB2 CG SING N N 29
PSI CB2 HB12 SING N N 30
PSI CB2 HB22 SING N N 31
PSI CG CD1 DOUB Y N 32
PSI CG CD2 SING Y N 33
PSI CD1 CE1 SING Y N 34
PSI CD1 HD1 SING N N 35
PSI CD2 CE2 DOUB Y N 36
PSI CD2 HD2 SING N N 37
PSI CE1 CZ DOUB Y N 38
PSI CE1 HE1 SING N N 39
PSI CE2 CZ SING Y N 40
PSI CE2 HE2 SING N N 41
PSI CZ HZ SING N N 42
PSI CM HM2 SING N N 43
PSI CM HM3 SING N N 44
PSI CA3 C3 SING N N 45
PSI CA3 HA3 SING N N 46
PSI C3 O2 DOUB N N 47
PSI N4 CA4 SING N N 48
PSI N4 H5 SING N N 49
PSI CA4 C4 SING N N 50
PSI CA4 CB3 SING N N 51
PSI CA4 HA4 SING N N 52
PSI C4 O3 DOUB N N 53
PSI CB3 CG1 SING N N 54
PSI CB3 CG2 SING N N 55
PSI CB3 HB SING N N 56
PSI CG1 HG11 SING N N 57
PSI CG1 HG12 SING N N 58
PSI CG1 HG13 SING N N 59
PSI CG2 HG21 SING N N 60
PSI CG2 HG22 SING N N 61
PSI CG2 HG23 SING N N 62
PSI N5 CA5 SING N N 63
PSI N5 H6 SING N N 64
PSI CA5 C5 SING N N 65
PSI CA5 CB4 SING N N 66
PSI CA5 HA5 SING N N 67
PSI C5 O4 DOUB N N 68
PSI CB4 CG11 SING N N 69
PSI CB4 CG21 SING N N 70
PSI CB4 HB4 SING N N 71
PSI CG11 HG14 SING N N 72
PSI CG11 HG15 SING N N 73
PSI CG11 HG16 SING N N 74
PSI CG21 HG24 SING N N 75
PSI CG21 HG25 SING N N 76
PSI C6 O5 SING N N 77
PSI C6 H22 SING N N 78
PSI C6 H31 SING N N 79
PSI C N1 SING N N 80
PSI C1 N2 SING N N 81
PSI CM CA3 SING N N 82
PSI C3 N4 SING N N 83
PSI C4 N5 SING N N 84
PSI C5 O5 SING N N 85
PSI CA3 HA31 SING N N 86
PSI HG26 CG21 SING N N 87
PSI H7 C6 SING N N 88
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PSI SMILES ACDLabs 12.01 "O=C(OC)C(NC(=O)C(NC(=O)CCC(O)C(NC(=O)C(NC(=O)C(N)C)C)Cc1ccccc1)C(C)C)C(C)C"
PSI SMILES_CANONICAL CACTVS 3.370 "COC(=O)[C@@H](NC(=O)[C@@H](NC(=O)CC[C@H](O)[C@H](Cc1ccccc1)NC(=O)[C@H](C)NC(=O)[C@H](C)N)C(C)C)C(C)C"
PSI SMILES CACTVS 3.370 "COC(=O)[CH](NC(=O)[CH](NC(=O)CC[CH](O)[CH](Cc1ccccc1)NC(=O)[CH](C)NC(=O)[CH](C)N)C(C)C)C(C)C"
PSI SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@@H](C(=O)N[C@@H](C)C(=O)N[C@@H](Cc1ccccc1)[C@H](CCC(=O)N[C@@H](C(C)C)C(=O)N[C@@H](C(C)C)C(=O)OC)O)N"
PSI SMILES "OpenEye OEToolkits" 1.7.0 "CC(C)C(C(=O)NC(C(C)C)C(=O)OC)NC(=O)CCC(C(Cc1ccccc1)NC(=O)C(C)NC(=O)C(C)N)O"
PSI InChI InChI 1.03 "InChI=1S/C29H47N5O7/c1-16(2)24(28(39)34-25(17(3)4)29(40)41-7)33-23(36)14-13-22(35)21(15-20-11-9-8-10-12-20)32-27(38)19(6)31-26(37)18(5)30/h8-12,16-19,21-22,24-25,35H,13-15,30H2,1-7H3,(H,31,37)(H,32,38)(H,33,36)(H,34,39)/t18-,19-,21-,22-,24-,25-/m0/s1"
PSI InChIKey InChI 1.03 IUDCAKKZLXFOQA-QJAPXLAMSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PSI "SYSTEMATIC NAME" ACDLabs 12.01 "methyl N-{(4S,5S)-5-[(L-alanyl-L-alanyl)amino]-4-hydroxy-6-phenylhexanoyl}-L-valyl-L-valinate"
PSI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "methyl (2S)-2-[[(2S)-2-[[(4S,5S)-5-[[(2S)-2-[[(2S)-2-azanylpropanoyl]amino]propanoyl]amino]-4-hydroxy-6-phenyl-hexanoyl]amino]-3-methyl-butanoyl]amino]-3-methyl-butanoate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PSI "Create component" 1999-07-08 RCSB
PSI "Other modification" 2011-01-31 RCSB
PSI "Modify aromatic_flag" 2011-06-04 RCSB
PSI "Modify descriptor" 2011-06-04 RCSB
PSI "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id PSI
_pdbx_chem_comp_synonyms.name "SKF 107457"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##