data_PTE
#
_chem_comp.id PTE
_chem_comp.name "TUNGSTOPTERIN COFACTOR"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H22 Mg N10 O14 P2 S4 W"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2025-01-10
_chem_comp.pdbx_ambiguous_flag Y
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 1024.800
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PTE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 1AOR
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PTE C1 C1 C 0 1 N N N N N N 19.385 0.936 -25.911 ? ? ? C1 PTE 1
PTE C2 C2 C 0 1 N N R N N N 20.398 0.457 -24.879 ? ? ? C2 PTE 2
PTE C3 C3 C 0 1 N N N N N N 19.958 0.491 -23.407 ? ? ? C3 PTE 3
PTE S3 S3 S 0 1 N N N N N N 18.313 0.649 -22.976 ? ? ? S3 PTE 4
PTE C4 C4 C 0 1 N N N N N N 20.840 0.813 -22.401 ? ? ? C4 PTE 5
PTE S4 S4 S 0 1 N N N N N N 20.162 1.467 -20.908 ? ? ? S4 PTE 6
PTE W1 W1 W 0 1 N N N N N N 17.887 1.297 -20.712 ? ? ? W1 PTE 7
PTE C5 C5 C 0 1 N N R N N N 22.324 1.133 -22.732 ? ? ? C5 PTE 8
PTE N6 N6 N 0 1 N N N N N N 22.852 2.496 -22.518 ? ? ? N6 PTE 9
PTE C7 C7 C 0 1 N N N N N N 24.154 2.725 -22.762 ? ? ? C7 PTE 10
PTE C8 C8 C 0 1 N N N N N N 24.930 3.713 -22.086 ? ? ? C8 PTE 11
PTE O8 O8 O 0 1 N N N N N N 24.385 4.634 -21.215 ? ? ? O8 PTE 12
PTE N9 N9 N 0 1 N N N N N N 26.259 3.751 -22.221 ? ? ? N9 PTE 13
PTE C10 C10 C 0 1 N N N N N N 26.862 3.014 -23.186 ? ? ? C10 PTE 14
PTE N10 N10 N 0 1 N N N N N N 28.168 3.146 -23.491 ? ? ? N10 PTE 15
PTE N11 N11 N 0 1 N N N N N N 26.142 2.147 -23.945 ? ? ? N11 PTE 16
PTE C12 C12 C 0 1 N N N N N N 24.826 1.912 -23.722 ? ? ? C12 PTE 17
PTE N13 N13 N 0 1 N N N N N N 24.148 0.954 -24.402 ? ? ? N13 PTE 18
PTE C14 C14 C 0 1 N N R N N N 22.736 0.621 -24.143 ? ? ? C14 PTE 19
PTE O2 O2 O 0 1 N N N N N N 21.681 0.988 -24.983 ? ? ? O2 PTE 20
PTE C21 C21 C 0 1 N N N N N N 18.982 5.855 -22.743 ? ? ? C21 PTE 21
PTE C22 C22 C 0 1 N N R N N N 17.519 5.833 -22.288 ? ? ? C22 PTE 22
PTE C23 C23 C 0 1 N N N N N N 17.168 4.454 -21.706 ? ? ? C23 PTE 23
PTE S23 S23 S 0 1 N N N N N N 18.189 3.620 -20.559 ? ? ? S23 PTE 24
PTE C24 C24 C 0 1 N N N N N N 16.111 3.721 -22.262 ? ? ? C24 PTE 25
PTE S24 S24 S 0 1 N N N N N N 16.037 2.008 -21.983 ? ? ? S24 PTE 26
PTE C25 C25 C 0 1 N N R N N N 15.286 4.232 -23.449 ? ? ? C25 PTE 27
PTE N26 N26 N 0 1 N N N N N N 15.654 3.865 -24.830 ? ? ? N26 PTE 28
PTE C27 C27 C 0 1 N N N N N N 14.844 4.482 -25.713 ? ? ? C27 PTE 29
PTE C28 C28 C 0 1 N N N N N N 14.462 3.913 -26.959 ? ? ? C28 PTE 30
PTE O28 O28 O 0 1 N N N N N N 14.929 2.704 -27.378 ? ? ? O28 PTE 31
PTE N29 N29 N 0 1 N N N N N N 13.572 4.505 -27.768 ? ? ? N29 PTE 32
PTE C30 C30 C 0 1 N N N N N N 13.053 5.726 -27.464 ? ? ? C30 PTE 33
PTE N30 N30 N 0 1 N N N N N N 12.126 6.363 -28.214 ? ? ? N30 PTE 34
PTE N31 N31 N 0 1 N N N N N N 13.417 6.335 -26.305 ? ? ? N31 PTE 35
PTE C32 C32 C 0 1 N N N N N N 14.255 5.762 -25.429 ? ? ? C32 PTE 36
PTE N33 N33 N 0 1 N N N N N N 14.493 6.416 -24.285 ? ? ? N33 PTE 37
PTE C34 C34 C 0 1 N N R N N N 15.167 5.750 -23.170 ? ? ? C34 PTE 38
PTE O22 O22 O 0 1 N N N N N N 16.524 6.057 -23.235 ? ? ? O22 PTE 39
PTE P1 P1 P 0 1 N N N N N N 20.032 1.891 -28.159 ? ? ? P1 PTE 40
PTE O1P O1P O 0 1 N N N N N N 20.874 3.179 -27.728 ? ? ? O1P PTE 41
PTE O2P O2P O 0 1 N N N N N N 20.970 1.486 -29.349 ? ? ? O2P PTE 42
PTE O3P O3P O 0 1 N N N N N N 18.669 2.253 -28.579 ? ? ? O3P PTE 43
PTE O4P O4P O 0 1 N N N N N N 20.137 0.777 -27.089 ? ? ? O4P PTE 44
PTE P2 P2 P 0 1 N N N N N N 20.374 7.281 -24.188 ? ? ? P2 PTE 45
PTE O5P O5P O 0 1 N N N N N N 20.154 6.457 -25.512 ? ? ? O5P PTE 46
PTE O6P O6P O 0 1 N N N N N N 20.603 8.800 -24.551 ? ? ? O6P PTE 47
PTE O7P O7P O 0 1 N N N N N N 21.638 6.760 -23.601 ? ? ? O7P PTE 48
PTE O8P O8P O 0 1 N N N N N N 19.228 7.152 -23.267 ? ? ? O8P PTE 49
PTE MG1 MG1 MG 0 0 N N N N N N 20.386 4.799 -26.617 ? ? ? MG1 PTE 50
PTE O1G O1G O 0 1 N N N N N N 18.378 4.308 -26.245 ? ? ? O1G PTE 51
PTE O2G O2G O 0 1 N N N N N N 21.386 3.999 -24.937 ? ? ? O2G PTE 52
PTE H11 H11 H 0 1 N N N N N N 18.481 0.309 -25.917 ? ? ? H11 PTE 53
PTE H12 H12 H 0 1 N N N N N N 19.102 1.986 -25.747 ? ? ? H12 PTE 54
PTE H2 H2 H 0 1 N N N N N N 20.510 -0.616 -25.095 ? ? ? H2 PTE 55
PTE H5 H5 H 0 1 N N N N N N 22.896 0.498 -22.040 ? ? ? H5 PTE 56
PTE H6 H6 H 0 1 N N N N N N 22.329 3.111 -23.107 ? ? ? H6 PTE 57
PTE H9 H9 H 0 1 N N N N N N 26.808 4.322 -21.611 ? ? ? H9 PTE 58
PTE H101 H101 H 0 0 N N N N N N 28.561 2.619 -24.244 ? ? ? H101 PTE 59
PTE H102 H102 H 0 0 N N N N N N 28.744 3.771 -22.964 ? ? ? H102 PTE 60
PTE H13 H13 H 0 1 N N N N N N 24.195 1.217 -25.366 ? ? ? H13 PTE 61
PTE H14 H14 H 0 1 N N N N N N 22.702 -0.476 -24.063 ? ? ? H14 PTE 62
PTE H211 H211 H 0 0 N N N N N N 19.647 5.659 -21.889 ? ? ? H211 PTE 63
PTE H212 H212 H 0 0 N N N N N N 19.149 5.094 -23.520 ? ? ? H212 PTE 64
PTE H22 H22 H 0 1 N N N N N N 17.417 6.567 -21.475 ? ? ? H22 PTE 65
PTE H25 H25 H 0 1 N N N N N N 14.274 3.832 -23.291 ? ? ? H25 PTE 66
PTE H26 H26 H 0 1 N N N N N N 16.600 4.140 -25.003 ? ? ? H26 PTE 67
PTE H29 H29 H 0 1 N N N N N N 13.285 4.043 -28.607 ? ? ? H29 PTE 68
PTE H301 H301 H 0 0 N N N N N N 11.747 7.235 -27.905 ? ? ? H301 PTE 69
PTE H302 H302 H 0 0 N N N N N N 11.820 5.962 -29.077 ? ? ? H302 PTE 70
PTE H33 H33 H 0 1 N N N N N N 15.051 7.212 -24.522 ? ? ? H33 PTE 71
PTE H34 H34 H 0 1 N N N N N N 14.699 5.953 -22.195 ? ? ? H34 PTE 72
PTE HOP2 HOP2 H 0 0 N N N N N N 20.489 1.543 -30.166 ? ? ? HOP2 PTE 73
PTE HOP6 HOP6 H 0 0 N N N N N N 21.489 9.051 -24.319 ? ? ? HOP6 PTE 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PTE C1 C2 SING N N 1
PTE C1 O4P SING N N 2
PTE C1 H11 SING N N 3
PTE C1 H12 SING N N 4
PTE C2 C3 SING N N 5
PTE C2 O2 SING N N 6
PTE C2 H2 SING N N 7
PTE C3 S3 SING N N 8
PTE C3 C4 DOUB N N 9
PTE C4 S4 SING N N 10
PTE C4 C5 SING N N 11
PTE S4 W1 SING N N 12
PTE C5 N6 SING N N 13
PTE C5 C14 SING N N 14
PTE C5 H5 SING N N 15
PTE N6 C7 SING N N 16
PTE N6 H6 SING N N 17
PTE C7 C8 SING N N 18
PTE C7 C12 DOUB N N 19
PTE C8 O8 DOUB N N 20
PTE C8 N9 SING N N 21
PTE N9 C10 SING N N 22
PTE N9 H9 SING N N 23
PTE C10 N10 SING N N 24
PTE C10 N11 DOUB N N 25
PTE N10 H101 SING N N 26
PTE N10 H102 SING N N 27
PTE N11 C12 SING N N 28
PTE C12 N13 SING N N 29
PTE N13 C14 SING N N 30
PTE N13 H13 SING N N 31
PTE C14 O2 SING N N 32
PTE C14 H14 SING N N 33
PTE C21 C22 SING N N 34
PTE C21 O8P SING N N 35
PTE C21 H211 SING N N 36
PTE C21 H212 SING N N 37
PTE C22 C23 SING N N 38
PTE C22 O22 SING N N 39
PTE C22 H22 SING N N 40
PTE C23 S23 SING N N 41
PTE C23 C24 DOUB N N 42
PTE C24 S24 SING N N 43
PTE C24 C25 SING N N 44
PTE C25 N26 SING N N 45
PTE C25 C34 SING N N 46
PTE C25 H25 SING N N 47
PTE N26 C27 SING N N 48
PTE N26 H26 SING N N 49
PTE C27 C28 SING N N 50
PTE C27 C32 DOUB N N 51
PTE C28 O28 DOUB N N 52
PTE C28 N29 SING N N 53
PTE N29 C30 SING N N 54
PTE N29 H29 SING N N 55
PTE C30 N30 SING N N 56
PTE C30 N31 DOUB N N 57
PTE N30 H301 SING N N 58
PTE N30 H302 SING N N 59
PTE N31 C32 SING N N 60
PTE C32 N33 SING N N 61
PTE N33 C34 SING N N 62
PTE N33 H33 SING N N 63
PTE C34 O22 SING N N 64
PTE C34 H34 SING N N 65
PTE P1 O1P SING N N 66
PTE P1 O2P SING N N 67
PTE P1 O3P DOUB N N 68
PTE P1 O4P SING N N 69
PTE O1P MG1 SING N N 70
PTE O2P HOP2 SING N N 71
PTE P2 O5P SING N N 72
PTE P2 O6P SING N N 73
PTE P2 O7P DOUB N N 74
PTE P2 O8P SING N N 75
PTE O5P MG1 SING N N 76
PTE O6P HOP6 SING N N 77
PTE MG1 O1G SING N N 78
PTE MG1 O2G SING N N 79
PTE W1 S3 SING N N 80
PTE W1 S23 SING N N 81
PTE W1 S24 SING N N 82
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PTE InChI InChI 1.06 "InChI=1S/2C10H14N5O6PS2.Mg.2H2O.W/c2*11-10-14-7-4(8(16)15-10)12-3-6(24)5(23)2(21-9(3)13-7)1-20-22(17,18)19;;;;/h2*2-3,9,12,23-24H,1H2,(H2,17,18,19)(H4,11,13,14,15,16);;2*1H2;/q;;+4;;;+4/p-8/t2*2-,3+,9-;;;;/m11..../s1"
PTE InChIKey InChI 1.06 DYJJSYQWWQOQKE-MAAILCHMSA-F
PTE SMILES_CANONICAL CACTVS 3.385 "O.O.NC1=NC2=C(N[C@@H]3[C@H](N2)O[C@@H]4CO[P](O)(=O)O[Mg]O[P](O)(=O)OC[C@H]5O[C@H]6NC7=C(N[C@H]6C8=C5S[W]9(SC4=C3S9)S8)C(=O)NC(=N7)N)C(=O)N1"
PTE SMILES CACTVS 3.385 "O.O.NC1=NC2=C(N[CH]3[CH](N2)O[CH]4CO[P](O)(=O)O[Mg]O[P](O)(=O)OC[CH]5O[CH]6NC7=C(N[CH]6C8=C5S[W]9(SC4=C3S9)S8)C(=O)NC(=N7)N)C(=O)N1"
PTE SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C1[C@@H]2C3=C([C@H]4[C@@H](O2)NC5=C(N4)C(=O)NC(=N5)N)S[W]6(S3)SC7=C(S6)[C@H]8[C@H](NC9=C(N8)C(=O)NC(=N9)N)O[C@@H]7COP(=O)(O[Mg](OP(=O)(O1)O)([O])[O])O"
PTE SMILES "OpenEye OEToolkits" 3.1.0.0 "C1C2C3=C(C4C(O2)NC5=C(N4)C(=O)NC(=N5)N)S[W]6(S3)SC7=C(S6)C8C(NC9=C(N8)C(=O)NC(=N9)N)OC7COP(=O)(O[Mg](OP(=O)(O1)O)([O])[O])O"
#
_pdbx_chem_comp_identifier.comp_id PTE
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 3.1.0.0
_pdbx_chem_comp_identifier.identifier "(5~{R},14~{R},16~{R},26~{R},28~{R},37~{R})-10,32-bis(azanyl)-21,21-bis($l^{1}-oxidanyl)-19,23-bis(oxidanyl)-19,23-bis(oxidanylidene)-15,18,20,22,24,27-hexaoxa-2,40,41,42-tetrathia-6,9,11,13,29,31,33,36-octaza-19$l^{5},23$l^{5}-diphospha-1$l^{4}-tungsta-21$l^{4}-magnesanonacyclo[36.2.1.1^{1,4}.0^{3,16}.0^{5,14}.0^{7,12}.0^{26,39}.0^{28,37}.0^{30,35}]dotetraconta-3,7(12),10,30(35),31,38-hexaene-8,34-dione"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PTE "Create component" 1999-07-08 RCSB
PTE "Modify descriptor" 2023-09-23 RCSB
PTE "Other modification" 2025-01-10 RCSB
#