data_PTG # _chem_comp.id PTG _chem_comp.name "(5E,14E)-11-oxoprosta-5,9,12,14-tetraen-1-oic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H28 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "15-deoxy-delta(12,14)-prostaglandin J2" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-03-16 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 316.435 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PTG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2ZK1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PTG C1 C1 C 0 1 N N N N N N 39.826 43.804 28.061 9.591 -2.374 0.701 C1 PTG 1 PTG C2 C2 C 0 1 N N N N N N 39.957 42.522 28.903 8.073 -2.415 0.891 C2 PTG 2 PTG C3 C3 C 0 1 N N N N N N 39.030 42.599 30.113 7.403 -1.540 -0.170 C3 PTG 3 PTG C4 C4 C 0 1 N N N N N N 39.206 41.634 31.305 5.885 -1.582 0.020 C4 PTG 4 PTG C5 C5 C 0 1 N N N N N N 39.147 42.220 32.719 5.215 -0.706 -1.041 C5 PTG 5 PTG C6 C6 C 0 1 N N N N N N 39.175 41.234 33.704 3.720 -0.747 -0.855 C6 PTG 6 PTG C7 C7 C 0 1 N N N N N N 38.333 41.371 34.819 3.034 0.389 -0.707 C7 PTG 7 PTG C8 C8 C 0 1 N N N N N N 38.332 40.320 35.973 1.584 0.349 -0.526 C8 PTG 8 PTG C10 C10 C 0 1 N N N N N N 36.948 40.240 36.732 0.888 1.501 -0.376 C10 PTG 9 PTG C11 C11 C 0 1 N N N N N N 35.987 41.451 36.731 1.418 2.868 -0.370 C11 PTG 10 PTG O12 O12 O 0 1 N N N N N N 36.324 42.641 36.794 2.588 3.183 -0.501 O12 PTG 11 PTG C13 C13 C 0 1 N N N N N N 34.713 41.045 36.651 0.294 3.792 -0.177 C13 PTG 12 PTG C14 C14 C 0 1 N N N N N N 34.624 39.733 36.395 -0.853 3.141 -0.067 C14 PTG 13 PTG C15 C15 C 0 1 N N S N N N 36.016 39.084 36.273 -0.605 1.657 -0.185 C15 PTG 14 PTG C16 C16 C 0 1 N N N N N N 36.144 37.822 37.206 -1.051 0.948 1.095 C16 PTG 15 PTG C17 C17 C 0 1 N N N N N N 35.322 36.735 36.822 -2.552 1.007 1.206 C17 PTG 16 PTG C18 C18 C 0 1 N N N N N N 34.935 35.698 37.692 -3.243 -0.097 1.348 C18 PTG 17 PTG C19 C19 C 0 1 N N N N N N 34.103 34.672 37.169 -4.745 -0.037 1.459 C19 PTG 18 PTG C20 C20 C 0 1 N N N N N N 33.944 33.393 38.021 -5.371 -0.936 0.391 C20 PTG 19 PTG C21 C21 C 0 1 N N N N N N 32.508 32.813 38.014 -6.896 -0.875 0.504 C21 PTG 20 PTG C22 C22 C 0 1 N N N N N N 32.471 31.277 37.732 -7.513 -1.760 -0.549 C22 PTG 21 PTG O23 O23 O 0 1 N N N N N N 33.078 30.871 36.710 -6.806 -2.375 -1.311 O23 PTG 22 PTG O24 O24 O 0 1 N N N N N N 31.731 30.452 38.636 -8.848 -1.864 -0.640 O24 PTG 23 PTG H1 H1 H 0 1 N N N N N N 39.795 44.679 28.727 9.942 -1.347 0.803 H1 PTG 24 PTG H1A H1A H 0 1 N N N N N N 40.690 43.888 27.385 10.069 -2.997 1.457 H1A PTG 25 PTG H1B H1B H 0 1 N N N N N N 38.900 43.761 27.469 9.844 -2.748 -0.291 H1B PTG 26 PTG H2 H2 H 0 1 N N N N N N 39.682 41.653 28.288 7.722 -3.442 0.789 H2 PTG 27 PTG H2A H2A H 0 1 N N N N N N 40.996 42.420 29.248 7.821 -2.042 1.883 H2A PTG 28 PTG H3 H3 H 0 1 N N N N N N 39.156 43.611 30.524 7.754 -0.513 -0.068 H3 PTG 29 PTG H3A H3A H 0 1 N N N N N N 38.052 42.313 29.699 7.655 -1.914 -1.162 H3A PTG 30 PTG H4 H4 H 0 1 N N N N N N 38.396 40.893 31.235 5.534 -2.609 -0.082 H4 PTG 31 PTG H4A H4A H 0 1 N N N N N N 40.231 41.248 31.204 5.633 -1.208 1.012 H4A PTG 32 PTG H5 H5 H 0 1 N N N N N N 40.016 42.879 32.860 5.566 0.320 -0.940 H5 PTG 33 PTG H5A H5A H 0 1 N N N N N N 38.198 42.768 32.818 5.467 -1.080 -2.033 H5A PTG 34 PTG H6 H6 H 0 1 N N N N N N 39.832 40.381 33.611 3.203 -1.696 -0.841 H6 PTG 35 PTG H7 H7 H 0 1 N N N N N N 37.671 42.222 34.880 3.551 1.337 -0.721 H7 PTG 36 PTG H8 H8 H 0 1 N N N N N N 39.187 39.711 36.226 1.067 -0.599 -0.512 H8 PTG 37 PTG H13 H13 H 0 1 N N N N N N 33.861 41.696 36.778 0.391 4.867 -0.128 H13 PTG 38 PTG H14 H14 H 0 1 N N N N N N 33.693 39.197 36.288 -1.819 3.601 0.084 H14 PTG 39 PTG H15 H15 H 0 1 N N N N N N 36.248 38.706 35.266 -1.138 1.252 -1.045 H15 PTG 40 PTG H16 H16 H 0 1 N N N N N N 37.190 37.483 37.177 -0.729 -0.093 1.064 H16 PTG 41 PTG H16A H16A H 0 0 N N N N N N 35.818 38.131 38.210 -0.603 1.440 1.958 H16A PTG 42 PTG H17 H17 H 0 1 N N N N N N 34.971 36.699 35.801 -3.059 1.960 1.169 H17 PTG 43 PTG H18 H18 H 0 1 N N N N N N 35.260 35.683 38.722 -2.736 -1.050 1.386 H18 PTG 44 PTG H19 H19 H 0 1 N N N N N N 33.099 35.104 37.046 -5.050 -0.381 2.448 H19 PTG 45 PTG H19A H19A H 0 0 N N N N N N 34.597 34.343 36.243 -5.079 0.990 1.313 H19A PTG 46 PTG H20 H20 H 0 1 N N N N N N 34.623 32.628 37.617 -5.066 -0.592 -0.597 H20 PTG 47 PTG H20A H20A H 0 0 N N N N N N 34.177 33.666 39.061 -5.036 -1.962 0.538 H20A PTG 48 PTG H21 H21 H 0 1 N N N N N N 32.057 32.994 39.001 -7.201 -1.219 1.492 H21 PTG 49 PTG H21A H21A H 0 0 N N N N N N 31.954 33.311 37.205 -7.230 0.152 0.357 H21A PTG 50 PTG H28 H28 H 0 1 N N N N N N 31.769 29.549 38.344 -9.197 -2.443 -1.330 H28 PTG 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PTG C1 C2 SING N N 1 PTG C1 H1 SING N N 2 PTG C1 H1A SING N N 3 PTG C1 H1B SING N N 4 PTG C2 C3 SING N N 5 PTG C2 H2 SING N N 6 PTG C2 H2A SING N N 7 PTG C3 C4 SING N N 8 PTG C3 H3 SING N N 9 PTG C3 H3A SING N N 10 PTG C4 C5 SING N N 11 PTG C4 H4 SING N N 12 PTG C4 H4A SING N N 13 PTG C5 C6 SING N N 14 PTG C5 H5 SING N N 15 PTG C5 H5A SING N N 16 PTG C6 C7 DOUB N E 17 PTG C6 H6 SING N N 18 PTG C7 C8 SING N N 19 PTG C7 H7 SING N N 20 PTG C8 C10 DOUB N Z 21 PTG C8 H8 SING N N 22 PTG C10 C11 SING N N 23 PTG C10 C15 SING N N 24 PTG C11 O12 DOUB N N 25 PTG C13 C14 DOUB N N 26 PTG C13 H13 SING N N 27 PTG C14 C15 SING N N 28 PTG C14 H14 SING N N 29 PTG C15 C16 SING N N 30 PTG C15 H15 SING N N 31 PTG C16 C17 SING N N 32 PTG C16 H16 SING N N 33 PTG C16 H16A SING N N 34 PTG C17 C18 DOUB N N 35 PTG C17 H17 SING N E 36 PTG C18 C19 SING N N 37 PTG C18 H18 SING N N 38 PTG C19 C20 SING N N 39 PTG C19 H19 SING N N 40 PTG C19 H19A SING N N 41 PTG C20 C21 SING N N 42 PTG C20 H20 SING N N 43 PTG C20 H20A SING N N 44 PTG C21 C22 SING N N 45 PTG C21 H21 SING N N 46 PTG C21 H21A SING N N 47 PTG C22 O23 DOUB N N 48 PTG C22 O24 SING N N 49 PTG C13 C11 SING N N 50 PTG O24 H28 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PTG SMILES ACDLabs 10.04 "O=C\1C=CC(C/1=C\C=C\CCCCC)C/C=C/CCCC(=O)O" PTG SMILES_CANONICAL CACTVS 3.341 "CCCCC\C=C\C=C/1[C@@H](C\C=C\CCCC(O)=O)C=CC/1=O" PTG SMILES CACTVS 3.341 "CCCCCC=CC=C1[CH](CC=CCCCC(O)=O)C=CC1=O" PTG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCC\C=C\C=C1[C@H](C=CC1=O)C\C=C\CCCC(=O)O" PTG SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCC=CC=C1C(C=CC1=O)CC=CCCCC(=O)O" PTG InChI InChI 1.03 "InChI=1S/C20H28O3/c1-2-3-4-5-6-10-13-18-17(15-16-19(18)21)12-9-7-8-11-14-20(22)23/h6-7,9-10,13,15-17H,2-5,8,11-12,14H2,1H3,(H,22,23)/b9-7+,10-6+,18-13-/t17-/m0/s1" PTG InChIKey InChI 1.03 VHRUMKCAEVRUBK-XOVNXQNQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PTG "SYSTEMATIC NAME" ACDLabs 10.04 "(5E,12Z,14E)-11-oxoprosta-5,9,12,14-tetraen-1-oic acid" PTG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(E)-7-[(1S)-5-[(E)-oct-2-enylidene]-4-oxo-1-cyclopent-2-enyl]hept-5-enoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PTG "Create component" 2008-03-16 PDBJ PTG "Modify descriptor" 2011-06-04 RCSB PTG "Modify synonyms" 2020-06-05 PDBE PTG "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id PTG _pdbx_chem_comp_synonyms.name "15-deoxy-delta(12,14)-prostaglandin J2" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 PTG CYS None Lipid/lipid-like "Amino-acid side chain" "Any position" C14 SG PTM-0447 ? 2 PTG CYS None Lipid/lipid-like "Amino-acid side chain" "Any position" C8 SG ? ? #