data_PUQ # _chem_comp.id PUQ _chem_comp.name "pelargonidin 3-O-beta-D-glucoside" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H22 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2~{S},3~{R},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-[[2-(4-hydroxyphenyl)-5,7-bis(oxidanyl)-2~{H}-chromen-3-yl]oxy]oxane-3,4,5-triol" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-04-28 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 434.393 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PUQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YVE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PUQ O10 O1 O 0 1 N N N 38.902 -40.749 -2.827 3.710 2.173 2.066 O10 PUQ 1 PUQ C20 C1 C 0 1 N N S 39.343 -39.830 -1.825 3.582 1.773 0.700 C20 PUQ 2 PUQ C19 C2 C 0 1 N N R 40.827 -39.516 -1.885 4.172 0.370 0.520 C19 PUQ 3 PUQ O9 O2 O 0 1 N N N 41.573 -40.729 -1.758 5.570 0.399 0.811 O9 PUQ 4 PUQ C18 C3 C 0 1 N N R 41.237 -38.542 -0.782 3.959 -0.079 -0.929 C18 PUQ 5 PUQ O8 O3 O 0 1 N N N 42.456 -37.924 -1.183 4.440 -1.414 -1.091 O8 PUQ 6 PUQ C17 C4 C 0 1 N N S 40.223 -37.402 -0.496 2.464 -0.031 -1.256 C17 PUQ 7 PUQ C21 C5 C 0 1 N N N 40.226 -36.986 0.960 2.249 -0.420 -2.720 C21 PUQ 8 PUQ O7 O4 O 0 1 N N N 39.265 -35.951 1.211 0.848 -0.489 -2.993 O7 PUQ 9 PUQ O6 O5 O 0 1 N N N 38.833 -37.724 -0.781 1.972 1.293 -1.038 O6 PUQ 10 PUQ C16 C6 C 0 1 N N S 38.564 -38.525 -1.924 2.102 1.751 0.310 C16 PUQ 11 PUQ O2 O6 O 0 1 N N N 38.894 -37.879 -3.161 1.392 0.868 1.181 O2 PUQ 12 PUQ C8 C7 C 0 1 N N N 38.337 -36.656 -3.478 0.044 0.812 1.038 C8 PUQ 13 PUQ C7 C8 C 0 1 N N N 38.252 -35.765 -2.427 -0.562 1.564 0.111 C7 PUQ 14 PUQ C5 C9 C 0 1 Y N N 37.216 -34.828 -2.432 -2.034 1.477 0.002 C5 PUQ 15 PUQ C4 C10 C 0 1 Y N N 36.798 -34.174 -1.263 -2.708 1.946 -1.125 C4 PUQ 16 PUQ O3 O7 O 0 1 N N N 37.387 -34.471 -0.084 -2.017 2.498 -2.157 O3 PUQ 17 PUQ C3 C11 C 0 1 Y N N 35.768 -33.246 -1.316 -4.090 1.844 -1.186 C3 PUQ 18 PUQ C2 C12 C 0 1 Y N N 35.148 -32.963 -2.536 -4.794 1.280 -0.132 C2 PUQ 19 PUQ O4 O8 O 0 1 N N N 34.112 -32.064 -2.606 -6.148 1.185 -0.200 O4 PUQ 20 PUQ C9 C13 C 0 1 N N S 37.888 -36.209 -4.747 -0.771 -0.100 1.916 C9 PUQ 21 PUQ O1 O9 O 0 1 N N N 36.992 -35.154 -4.811 -2.067 0.453 2.148 O1 PUQ 22 PUQ C6 C14 C 0 1 Y N N 36.608 -34.517 -3.642 -2.750 0.908 1.065 C6 PUQ 23 PUQ C1 C15 C 0 1 Y N N 35.582 -33.584 -3.701 -4.126 0.812 0.992 C1 PUQ 24 PUQ C10 C16 C 0 1 Y N N 38.393 -36.711 -6.047 -0.916 -1.440 1.243 C10 PUQ 25 PUQ C15 C17 C 0 1 Y N N 38.153 -35.995 -7.221 -0.108 -2.495 1.623 C15 PUQ 26 PUQ C14 C18 C 0 1 Y N N 38.061 -36.673 -8.416 -0.239 -3.724 1.007 C14 PUQ 27 PUQ C13 C19 C 0 1 Y N N 38.361 -38.058 -8.478 -1.183 -3.900 0.005 C13 PUQ 28 PUQ O5 O10 O 0 1 N N N 38.022 -38.782 -9.499 -1.314 -5.108 -0.603 O5 PUQ 29 PUQ C12 C20 C 0 1 Y N N 39.007 -38.621 -7.345 -1.993 -2.839 -0.375 C12 PUQ 30 PUQ C11 C21 C 0 1 Y N N 39.081 -37.918 -6.163 -1.861 -1.614 0.249 C11 PUQ 31 PUQ HO10 H1 H 0 0 N N N 39.395 -41.558 -2.755 3.355 3.052 2.253 HO10 PUQ 32 PUQ H20 H2 H 0 1 N N N 39.136 -40.263 -0.835 4.116 2.477 0.062 H20 PUQ 33 PUQ H19 H3 H 0 1 N N N 41.045 -39.049 -2.857 3.673 -0.324 1.195 H19 PUQ 34 PUQ HO9 H4 H 0 1 N N N 42.502 -40.535 -1.795 5.779 0.682 1.712 HO9 PUQ 35 PUQ H18 H5 H 0 1 N N N 41.391 -39.109 0.148 4.500 0.588 -1.600 H18 PUQ 36 PUQ HO8 H6 H 0 1 N N N 42.736 -37.311 -0.514 5.381 -1.520 -0.895 HO8 PUQ 37 PUQ H17 H7 H 0 1 N N N 40.519 -36.532 -1.101 1.929 -0.728 -0.612 H17 PUQ 38 PUQ H211 H8 H 0 0 N N N 39.982 -37.860 1.582 2.709 0.327 -3.366 H211 PUQ 39 PUQ H212 H9 H 0 0 N N N 41.228 -36.616 1.224 2.704 -1.393 -2.907 H212 PUQ 40 PUQ HO7 H10 H 0 1 N N N 39.290 -35.711 2.130 0.637 -0.731 -3.905 HO7 PUQ 41 PUQ H16 H11 H 0 1 N N N 37.494 -38.779 -1.935 1.688 2.756 0.395 H16 PUQ 42 PUQ H7 H12 H 0 1 N N N 38.969 -35.792 -1.620 0.007 2.214 -0.537 H7 PUQ 43 PUQ HO3 H13 H 0 1 N N N 36.996 -33.948 0.606 -1.742 1.861 -2.831 HO3 PUQ 44 PUQ H3 H14 H 0 1 N N N 35.446 -32.743 -0.416 -4.619 2.205 -2.055 H3 PUQ 45 PUQ HO4 H15 H 0 1 N N N 33.928 -31.724 -1.738 -6.466 0.362 -0.595 HO4 PUQ 46 PUQ H1 H16 H 0 1 N N N 35.123 -33.342 -4.648 -4.681 0.370 1.807 H1 PUQ 47 PUQ H15 H17 H 0 1 N N N 38.041 -34.921 -7.192 0.627 -2.358 2.403 H15 PUQ 48 PUQ H14 H18 H 0 1 N N N 37.759 -36.148 -9.310 0.393 -4.548 1.304 H14 PUQ 49 PUQ HO5 H19 H 0 1 N N N 38.306 -39.678 -9.361 -1.949 -5.697 -0.174 HO5 PUQ 50 PUQ H12 H20 H 0 1 N N N 39.443 -39.607 -7.411 -2.728 -2.973 -1.154 H12 PUQ 51 PUQ H11 H21 H 0 1 N N N 39.664 -38.297 -5.337 -2.492 -0.788 -0.046 H11 PUQ 52 PUQ H2 H22 H 0 1 N N N 37.069 -36.944 -4.749 -0.259 -0.231 2.870 H2 PUQ 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PUQ O5 C13 SING N N 1 PUQ C13 C14 DOUB Y N 2 PUQ C13 C12 SING Y N 3 PUQ C14 C15 SING Y N 4 PUQ C12 C11 DOUB Y N 5 PUQ C15 C10 DOUB Y N 6 PUQ C11 C10 SING Y N 7 PUQ C10 C9 SING N N 8 PUQ O1 C9 SING N N 9 PUQ O1 C6 SING N N 10 PUQ C9 C8 SING N N 11 PUQ C1 C6 DOUB Y N 12 PUQ C1 C2 SING Y N 13 PUQ C6 C5 SING Y N 14 PUQ C8 O2 SING N N 15 PUQ C8 C7 DOUB N N 16 PUQ O2 C16 SING N N 17 PUQ O10 C20 SING N N 18 PUQ O4 C2 SING N N 19 PUQ C2 C3 DOUB Y N 20 PUQ C5 C7 SING N N 21 PUQ C5 C4 DOUB Y N 22 PUQ C16 C20 SING N N 23 PUQ C16 O6 SING N N 24 PUQ C19 C20 SING N N 25 PUQ C19 O9 SING N N 26 PUQ C19 C18 SING N N 27 PUQ C3 C4 SING Y N 28 PUQ C4 O3 SING N N 29 PUQ O8 C18 SING N N 30 PUQ C18 C17 SING N N 31 PUQ O6 C17 SING N N 32 PUQ C17 C21 SING N N 33 PUQ C21 O7 SING N N 34 PUQ O10 HO10 SING N N 35 PUQ C20 H20 SING N N 36 PUQ C19 H19 SING N N 37 PUQ O9 HO9 SING N N 38 PUQ C18 H18 SING N N 39 PUQ O8 HO8 SING N N 40 PUQ C17 H17 SING N N 41 PUQ C21 H211 SING N N 42 PUQ C21 H212 SING N N 43 PUQ O7 HO7 SING N N 44 PUQ C16 H16 SING N N 45 PUQ C7 H7 SING N N 46 PUQ O3 HO3 SING N N 47 PUQ C3 H3 SING N N 48 PUQ O4 HO4 SING N N 49 PUQ C1 H1 SING N N 50 PUQ C15 H15 SING N N 51 PUQ C14 H14 SING N N 52 PUQ O5 HO5 SING N N 53 PUQ C12 H12 SING N N 54 PUQ C11 H11 SING N N 55 PUQ C9 H2 SING N N 56 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PUQ InChI InChI 1.03 "InChI=1S/C21H22O10/c22-8-16-17(26)18(27)19(28)21(31-16)30-15-7-12-13(25)5-11(24)6-14(12)29-20(15)9-1-3-10(23)4-2-9/h1-7,16-28H,8H2/t16-,17-,18+,19-,20?,21+/m0/s1" PUQ InChIKey InChI 1.03 SNGNSJWVINEVCL-FGWZRKRKSA-N PUQ SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1O[C@@H](OC2=Cc3c(O)cc(O)cc3O[C@H]2c4ccc(O)cc4)[C@@H](O)[C@H](O)[C@H]1O" PUQ SMILES CACTVS 3.385 "OC[CH]1O[CH](OC2=Cc3c(O)cc(O)cc3O[CH]2c4ccc(O)cc4)[CH](O)[CH](O)[CH]1O" PUQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C2C(=Cc3c(cc(cc3O2)O)O)O[C@H]4[C@H]([C@@H]([C@H]([C@@H](O4)CO)O)O)O)O" PUQ SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C2C(=Cc3c(cc(cc3O2)O)O)OC4C(C(C(C(O4)CO)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id PUQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{R},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-[[2-(4-hydroxyphenyl)-5,7-bis(oxidanyl)-2~{H}-chromen-3-yl]oxy]oxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PUQ "Create component" 2020-04-28 PDBE PUQ "Initial release" 2020-11-18 RCSB PUQ "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id PUQ _pdbx_chem_comp_synonyms.name "(2~{S},3~{R},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-[[2-(4-hydroxyphenyl)-5,7-bis(oxidanyl)-2~{H}-chromen-3-yl]oxy]oxane-3,4,5-triol" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##