data_PVE # _chem_comp.id PVE _chem_comp.name "(1S)-1-CARBOXY-5-[(3-CARBOXYPROPANOYL)AMINO]-8,9-DIHYDROXY-1,2,3,4-TETRAHYDROPYRIMIDO[1,2-A]QUINOLIN-11-IUM" _chem_comp.type non-polymer _chem_comp.pdbx_type ? _chem_comp.formula "C17 H18 N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2008-10-14 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 376.341 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PVE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2W16 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PVE O23 O23 O 0 1 N N N N N N -69.868 -26.617 24.001 -69.868 -26.617 24.001 O23 PVE 1 PVE C22 C22 C 0 1 N N N N N N -68.656 -26.389 23.781 -68.656 -26.389 23.781 C22 PVE 2 PVE O24 O24 O 0 1 N N N N N N -67.806 -26.210 24.700 -67.806 -26.210 24.700 O24 PVE 3 PVE C21 C21 C 0 1 N N N N N N -68.211 -26.330 22.327 -68.211 -26.330 22.327 C21 PVE 4 PVE C20 C20 C 0 1 N N N N N N -69.067 -27.229 21.432 -69.067 -27.229 21.432 C20 PVE 5 PVE C18 C18 C 0 1 N N N N N N -68.754 -28.685 21.728 -68.754 -28.685 21.728 C18 PVE 6 PVE O19 O19 O 0 1 N N N N N N -68.540 -29.034 22.888 -68.540 -29.034 22.888 O19 PVE 7 PVE N17 N17 N 0 1 N N N N N N -68.725 -29.541 20.688 -68.725 -29.541 20.688 N17 PVE 8 PVE C3 C3 C 0 1 Y N N N N N -68.445 -30.905 20.904 -68.445 -30.905 20.904 C3 PVE 9 PVE C4 C4 C 0 1 Y N N N N N -67.153 -31.418 20.726 -67.153 -31.418 20.726 C4 PVE 10 PVE C10 C10 C 0 1 Y N N N N N -66.897 -32.781 20.957 -66.897 -32.781 20.957 C10 PVE 11 PVE C5 C5 C 0 1 Y N N N N N -65.595 -33.284 20.779 -65.595 -33.284 20.779 C5 PVE 12 PVE C6 C6 C 0 1 Y N N N N N -65.308 -34.626 20.995 -65.308 -34.626 20.995 C6 PVE 13 PVE O25 O25 O 0 1 N N N N N N -64.080 -35.182 20.843 -64.080 -35.182 20.843 O25 PVE 14 PVE C7 C7 C 0 1 Y N N N N N -66.302 -35.477 21.392 -66.302 -35.477 21.392 C7 PVE 15 PVE O26 O26 O 0 1 N N N N N N -65.867 -36.760 21.593 -65.867 -36.760 21.593 O26 PVE 16 PVE C8 C8 C 0 1 Y N N N N N -67.626 -34.994 21.578 -67.626 -34.994 21.578 C8 PVE 17 PVE C9 C9 C 0 1 Y N N N N N -67.946 -33.624 21.364 -67.946 -33.624 21.364 C9 PVE 18 PVE N1 N1 N 1 1 Y N N N N N -69.202 -33.083 21.560 -69.202 -33.083 21.560 N1 PVE 19 PVE C14 C14 C 0 1 N N S N N N -70.340 -33.934 21.944 -70.340 -33.934 21.944 C14 PVE 20 PVE C15 C15 C 0 1 N N N N N N -70.789 -34.576 20.633 -70.789 -34.576 20.633 C15 PVE 21 PVE O16 O16 O 0 1 N N N N N N -70.826 -33.878 19.622 -70.826 -33.878 19.622 O16 PVE 22 PVE C2 C2 C 0 1 Y N N N N N -69.465 -31.759 21.324 -69.465 -31.759 21.324 C2 PVE 23 PVE N11 N11 N 0 1 N N N N N N -70.711 -31.198 21.477 -70.711 -31.198 21.477 N11 PVE 24 PVE C12 C12 C 0 1 N N N N N N -71.909 -31.864 21.977 -71.909 -31.864 21.977 C12 PVE 25 PVE C13 C13 C 0 1 N N N N N N -71.469 -33.164 22.645 -71.469 -33.164 22.645 C13 PVE 26 PVE OXT OXT O 0 1 N Y N N N N -71.105 -35.819 20.587 -71.105 -35.819 20.587 OXT PVE 27 PVE H24 H24 H 0 1 N N N N N N -68.234 -26.277 25.545 -68.234 -26.277 25.545 H24 PVE 28 PVE H211 H211 H 0 0 N N N N N N -68.301 -25.292 21.973 -68.301 -25.292 21.973 H211 PVE 29 PVE H212 H212 H 0 0 N N N N N N -67.171 -26.683 22.273 -67.171 -26.683 22.273 H212 PVE 30 PVE H201 H201 H 0 0 N N N N N N -70.132 -27.036 21.630 -70.132 -27.036 21.629 H201 PVE 31 PVE H202 H202 H 0 0 N N N N N N -68.844 -27.014 20.377 -68.844 -27.014 20.376 H202 PVE 32 PVE H17 H17 H 0 1 N N N N N N -68.902 -29.208 19.762 -68.902 -29.208 19.762 H17 PVE 33 PVE H4 H4 H 0 1 N N N N N N -66.353 -30.765 20.411 -66.353 -30.765 20.411 H4 PVE 34 PVE H5 H5 H 0 1 N N N N N N -64.805 -32.615 20.469 -64.805 -32.616 20.469 H5 PVE 35 PVE H25 H25 H 0 1 N N N N N N -63.903 -35.312 19.919 -63.903 -35.312 19.919 H25 PVE 36 PVE H26 H26 H 0 1 N N N N N N -65.766 -37.196 20.755 -65.766 -37.196 20.755 H26 PVE 37 PVE H8 H8 H 0 1 N N N N N N -68.402 -35.678 21.887 -68.402 -35.678 21.887 H8 PVE 38 PVE H14 H14 H 0 1 N N N N N N -70.049 -34.682 22.696 -70.049 -34.682 22.696 H14 PVE 39 PVE H131 H131 H 0 0 N N N N N N -72.346 -33.828 22.680 -72.346 -33.827 22.680 H131 PVE 40 PVE H132 H132 H 0 0 N N N N N N -71.070 -32.876 23.629 -71.070 -32.876 23.628 H132 PVE 41 PVE HOT HOT H 0 1 N N N N N N -71.346 -36.052 19.698 -71.346 -36.052 19.698 HOT PVE 42 PVE H11 H11 H 0 1 N N N N N N -70.806 -30.236 21.220 -70.806 -30.236 21.220 H11 PVE 43 PVE H121 H121 H 0 0 N N N N N N -72.424 -31.220 22.705 -72.424 -31.220 22.705 H121 PVE 44 PVE H122 H122 H 0 0 N N N N N N -72.607 -32.071 21.153 -72.607 -32.071 21.153 H122 PVE 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PVE O23 C22 DOUB N N 1 PVE C22 O24 SING N N 2 PVE C22 C21 SING N N 3 PVE C21 C20 SING N N 4 PVE C20 C18 SING N N 5 PVE C18 O19 DOUB N N 6 PVE C18 N17 SING N N 7 PVE N17 C3 SING N N 8 PVE C3 C4 DOUB Y N 9 PVE C3 C2 SING Y N 10 PVE C4 C10 SING Y N 11 PVE C10 C5 SING Y N 12 PVE C10 C9 DOUB Y N 13 PVE C5 C6 DOUB Y N 14 PVE C6 O25 SING N N 15 PVE C6 C7 SING Y N 16 PVE C7 O26 SING N N 17 PVE C7 C8 DOUB Y N 18 PVE C8 C9 SING Y N 19 PVE C9 N1 SING Y N 20 PVE N1 C14 SING N N 21 PVE N1 C2 DOUB Y N 22 PVE C14 C15 SING N N 23 PVE C14 C13 SING N N 24 PVE C15 O16 DOUB N N 25 PVE C15 OXT SING N N 26 PVE C2 N11 SING N N 27 PVE N11 C12 SING N N 28 PVE C12 C13 SING N N 29 PVE O24 H24 SING N N 30 PVE C21 H211 SING N N 31 PVE C21 H212 SING N N 32 PVE C20 H201 SING N N 33 PVE C20 H202 SING N N 34 PVE N17 H17 SING N N 35 PVE C4 H4 SING N N 36 PVE C5 H5 SING N N 37 PVE O25 H25 SING N N 38 PVE O26 H26 SING N N 39 PVE C8 H8 SING N N 40 PVE C14 H14 SING N N 41 PVE C13 H131 SING N N 42 PVE C13 H132 SING N N 43 PVE OXT HOT SING N N 44 PVE N11 H11 SING N N 45 PVE C12 H121 SING N N 46 PVE C12 H122 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PVE SMILES ACDLabs 10.04 "O=C(O)CCC(=O)Nc1cc3c([n+]2c1NCCC2C(=O)O)cc(O)c(O)c3" PVE SMILES_CANONICAL CACTVS 3.341 "OC(=O)CCC(=O)Nc1cc2cc(O)c(O)cc2[n+]3[C@@H](CCNc13)C(O)=O" PVE SMILES CACTVS 3.341 "OC(=O)CCC(=O)Nc1cc2cc(O)c(O)cc2[n+]3[CH](CCNc13)C(O)=O" PVE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c2cc(c(cc2[n+]3c(c1NC(=O)CCC(=O)O)NCC[C@H]3C(=O)O)O)O" PVE SMILES "OpenEye OEToolkits" 1.5.0 "c1c2cc(c(cc2[n+]3c(c1NC(=O)CCC(=O)O)NCCC3C(=O)O)O)O" PVE InChI InChI 1.03 "InChI=1S/C17H17N3O7/c21-12-6-8-5-9(19-14(23)1-2-15(24)25)16-18-4-3-10(17(26)27)20(16)11(8)7-13(12)22/h5-7,10H,1-4H2,(H5,18,19,21,22,23,24,25,26,27)/p+1/t10-/m0/s1" PVE InChIKey InChI 1.03 PKIXPGNFUHEBHN-JTQLQIEISA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PVE "SYSTEMATIC NAME" ACDLabs 10.04 "(1S)-1-carboxy-5-[(3-carboxypropanoyl)amino]-8,9-dihydroxy-1,2,3,4-tetrahydropyrimido[1,2-a]quinolin-11-ium" PVE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(1S)-8,9-dihydroxy-5-[(4-hydroxy-4-oxo-butanoyl)amino]-1,2,3,4-tetrahydropyrimido[3,2-a]quinolin-11-ium-1-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PVE "Create component" 2008-10-14 EBI PVE "Modify aromatic_flag" 2011-06-04 RCSB PVE "Modify descriptor" 2011-06-04 RCSB PVE "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id PVE _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position N-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #