data_PVT # _chem_comp.id PVT _chem_comp.name "5-[[4-(pyridin-3-ylmethylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino]-1,3-dihydroindol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H15 F3 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-04-29 _chem_comp.pdbx_modified_date 2021-02-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 400.357 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PVT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YVS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PVT C1 C1 C 0 1 Y N N 27.995 -10.524 14.587 4.878 -1.401 -0.236 C1 PVT 1 PVT C2 C2 C 0 1 Y N N 28.071 -9.475 13.689 5.673 -1.473 0.897 C2 PVT 2 PVT C3 C3 C 0 1 Y N N 28.743 -9.630 12.494 7.050 -1.444 0.740 C3 PVT 3 PVT C7 C4 C 0 1 N N N 27.248 -10.402 15.891 3.376 -1.429 -0.118 C7 PVT 4 PVT C9 C5 C 0 1 Y N N 23.464 -10.601 14.311 -0.648 -0.636 0.260 C9 PVT 5 PVT C11 C6 C 0 1 Y N N 22.915 -8.503 14.954 -0.346 1.646 0.400 C11 PVT 6 PVT C12 C7 C 0 1 Y N N 24.173 -8.297 15.486 1.018 1.467 0.278 C12 PVT 7 PVT C13 C8 C 0 1 Y N N 25.068 -9.390 15.380 1.510 0.166 0.146 C13 PVT 8 PVT C15 C9 C 0 1 N N N 24.527 -6.979 16.111 1.954 2.648 0.288 C15 PVT 9 PVT C19 C10 C 0 1 Y N N 25.951 -14.047 13.243 -5.085 -2.126 1.039 C19 PVT 10 PVT C20 C11 C 0 1 Y N N 25.216 -12.882 13.393 -3.722 -2.332 1.023 C20 PVT 11 PVT C21 C12 C 0 1 Y N N 23.827 -12.929 13.508 -2.897 -1.506 0.271 C21 PVT 12 PVT C22 C13 C 0 1 Y N N 23.164 -14.151 13.457 -3.453 -0.468 -0.469 C22 PVT 13 PVT C24 C14 C 0 1 Y N N 23.892 -15.321 13.309 -4.813 -0.266 -0.451 C24 PVT 14 PVT O28 O1 O 0 1 N N N 24.975 -18.701 13.130 -8.135 0.936 -0.961 O28 PVT 15 PVT N29 N1 N 0 1 N N N 23.089 -11.755 13.705 -1.513 -1.717 0.258 N29 PVT 16 PVT C4 C15 C 0 1 Y N N 29.331 -10.847 12.232 7.581 -1.344 -0.532 C4 PVT 17 PVT N5 N2 N 0 1 Y N N 29.281 -11.881 13.077 6.794 -1.277 -1.588 N5 PVT 18 PVT C6 C16 C 0 1 Y N N 28.622 -11.703 14.228 5.480 -1.298 -1.476 C6 PVT 19 PVT N8 N3 N 0 1 N N N 26.299 -9.305 15.907 2.871 -0.061 0.021 N8 PVT 20 PVT N10 N4 N 0 1 Y N N 22.536 -9.639 14.366 -1.142 0.587 0.387 N10 PVT 21 PVT N14 N5 N 0 1 Y N N 24.712 -10.533 14.786 0.654 -0.850 0.141 N14 PVT 22 PVT F16 F1 F 0 1 N N N 23.563 -6.091 15.997 2.668 2.687 -0.915 F16 PVT 23 PVT F17 F2 F 0 1 N N N 24.789 -7.081 17.396 1.216 3.827 0.431 F17 PVT 24 PVT F18 F3 F 0 1 N N N 25.597 -6.441 15.580 2.849 2.525 1.357 F18 PVT 25 PVT C23 C17 C 0 1 Y N N 25.277 -15.260 13.214 -5.647 -1.091 0.295 C23 PVT 26 PVT C25 C18 C 0 1 N N N 23.482 -16.758 13.226 -5.710 0.746 -1.126 C25 PVT 27 PVT C26 C19 C 0 1 N N N 24.805 -17.488 13.160 -7.102 0.377 -0.658 C26 PVT 28 PVT N27 N6 N 0 1 N N N 25.791 -16.555 13.148 -6.977 -0.688 0.151 N27 PVT 29 PVT H1 H1 H 0 1 N N N 27.602 -8.531 13.924 5.230 -1.551 1.879 H1 PVT 30 PVT H2 H2 H 0 1 N N N 28.806 -8.819 11.784 7.700 -1.497 1.601 H2 PVT 31 PVT H3 H3 H 0 1 N N N 26.701 -11.340 16.069 2.949 -1.885 -1.012 H3 PVT 32 PVT H4 H4 H 0 1 N N N 27.978 -10.244 16.698 3.091 -2.012 0.758 H4 PVT 33 PVT H5 H5 H 0 1 N N N 22.197 -7.699 15.018 -0.759 2.638 0.504 H5 PVT 34 PVT H6 H6 H 0 1 N N N 27.026 -14.012 13.151 -5.720 -2.773 1.627 H6 PVT 35 PVT H7 H7 H 0 1 N N N 25.723 -11.929 13.421 -3.293 -3.139 1.599 H7 PVT 36 PVT H8 H8 H 0 1 N N N 22.087 -14.188 13.532 -2.817 0.179 -1.056 H8 PVT 37 PVT H9 H9 H 0 1 N N N 22.155 -11.770 13.349 -1.160 -2.620 0.247 H9 PVT 38 PVT H10 H10 H 0 1 N N N 29.858 -10.972 11.298 8.653 -1.320 -0.662 H10 PVT 39 PVT H11 H11 H 0 1 N N N 28.577 -12.532 14.919 4.868 -1.241 -2.364 H11 PVT 40 PVT H12 H12 H 0 1 N N N 26.748 -8.547 15.435 3.490 0.686 0.024 H12 PVT 41 PVT H13 H13 H 0 1 N N N 22.882 -16.946 12.324 -5.455 1.757 -0.805 H13 PVT 42 PVT H14 H14 H 0 1 N N N 22.910 -17.058 14.116 -5.634 0.660 -2.210 H14 PVT 43 PVT H15 H15 H 0 1 N N N 26.766 -16.770 13.098 -7.726 -1.128 0.585 H15 PVT 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PVT C4 C3 DOUB Y N 1 PVT C4 N5 SING Y N 2 PVT C3 C2 SING Y N 3 PVT N5 C6 DOUB Y N 4 PVT O28 C26 DOUB N N 5 PVT N27 C26 SING N N 6 PVT N27 C23 SING N N 7 PVT C26 C25 SING N N 8 PVT C23 C19 DOUB Y N 9 PVT C23 C24 SING Y N 10 PVT C25 C24 SING N N 11 PVT C19 C20 SING Y N 12 PVT C24 C22 DOUB Y N 13 PVT C20 C21 DOUB Y N 14 PVT C22 C21 SING Y N 15 PVT C21 N29 SING N N 16 PVT C2 C1 DOUB Y N 17 PVT N29 C9 SING N N 18 PVT C6 C1 SING Y N 19 PVT C9 N10 DOUB Y N 20 PVT C9 N14 SING Y N 21 PVT N10 C11 SING Y N 22 PVT C1 C7 SING N N 23 PVT N14 C13 DOUB Y N 24 PVT C11 C12 DOUB Y N 25 PVT C13 C12 SING Y N 26 PVT C13 N8 SING N N 27 PVT C12 C15 SING N N 28 PVT F18 C15 SING N N 29 PVT C7 N8 SING N N 30 PVT F16 C15 SING N N 31 PVT C15 F17 SING N N 32 PVT C2 H1 SING N N 33 PVT C3 H2 SING N N 34 PVT C7 H3 SING N N 35 PVT C7 H4 SING N N 36 PVT C11 H5 SING N N 37 PVT C19 H6 SING N N 38 PVT C20 H7 SING N N 39 PVT C22 H8 SING N N 40 PVT N29 H9 SING N N 41 PVT C4 H10 SING N N 42 PVT C6 H11 SING N N 43 PVT N8 H12 SING N N 44 PVT C25 H13 SING N N 45 PVT C25 H14 SING N N 46 PVT N27 H15 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PVT InChI InChI 1.03 "InChI=1S/C19H15F3N6O/c20-19(21,22)14-10-25-18(28-17(14)24-9-11-2-1-5-23-8-11)26-13-3-4-15-12(6-13)7-16(29)27-15/h1-6,8,10H,7,9H2,(H,27,29)(H2,24,25,26,28)" PVT InChIKey InChI 1.03 HOEAQQRLTIBABU-UHFFFAOYSA-N PVT SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)c1cnc(Nc2ccc3NC(=O)Cc3c2)nc1NCc4cccnc4" PVT SMILES CACTVS 3.385 "FC(F)(F)c1cnc(Nc2ccc3NC(=O)Cc3c2)nc1NCc4cccnc4" PVT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cnc1)CNc2c(cnc(n2)Nc3ccc4c(c3)CC(=O)N4)C(F)(F)F" PVT SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cnc1)CNc2c(cnc(n2)Nc3ccc4c(c3)CC(=O)N4)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id PVT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[[4-(pyridin-3-ylmethylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino]-1,3-dihydroindol-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PVT "Create component" 2020-04-29 PDBE PVT "Initial release" 2021-02-10 RCSB ##