data_PW0 # _chem_comp.id PW0 _chem_comp.name "(~{Z})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]pent-2-enedioic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H17 N2 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-10-05 _chem_comp.pdbx_modified_date 2022-11-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 376.256 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PW0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AYK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PW0 N1 N1 N 0 1 Y N N -3.177 -3.423 4.451 -2.237 -3.408 -0.072 N1 PW0 1 PW0 C2 C2 C 0 1 Y N N -2.593 -3.883 5.557 -0.991 -3.838 -0.045 C2 PW0 2 PW0 C2A C2A C 0 1 N N N -1.598 -3.007 6.285 -0.709 -5.313 -0.171 C2A PW0 3 PW0 C3 C3 C 0 1 Y N N -2.935 -5.156 6.046 0.063 -2.947 0.097 C3 PW0 4 PW0 O3 O3 O 0 1 N N N -2.418 -5.609 7.208 1.346 -3.395 0.123 O3 PW0 5 PW0 C4 C4 C 0 1 Y N N -3.863 -5.971 5.369 -0.212 -1.588 0.212 C4 PW0 6 PW0 C4A C4A C 0 1 N N N -4.252 -7.325 5.904 0.902 -0.586 0.367 C4A PW0 7 PW0 C5 C5 C 0 1 Y N N -4.425 -5.478 4.186 -1.536 -1.179 0.179 C5 PW0 8 PW0 C6 C6 C 0 1 Y N N -4.036 -4.214 3.763 -2.532 -2.127 0.034 C6 PW0 9 PW0 C5A C5A C 0 1 N N N -5.404 -6.290 3.409 -1.885 0.282 0.300 C5A PW0 10 PW0 O4P O4P O 0 1 N N N -4.668 -7.321 2.693 -3.304 0.438 0.239 O4P PW0 11 PW0 P P P 0 1 N N N -5.462 -8.657 2.193 -4.033 1.871 0.337 P PW0 12 PW0 O1P O1P O 0 1 N N N -5.993 -9.294 3.442 -3.483 2.776 -0.697 O1P PW0 13 PW0 O2P O2P O 0 1 N N N -4.431 -9.440 1.442 -5.615 1.685 0.100 O2P PW0 14 PW0 O3P O3P O 0 1 N N N -6.620 -8.142 1.319 -3.779 2.503 1.795 O3P PW0 15 PW0 N N N 0 1 N N N -4.912 -7.205 7.209 1.337 -0.130 -0.956 N PW0 16 PW0 CA CA C 0 1 N N N -5.063 -8.285 8.003 2.217 0.795 -1.057 CA PW0 17 PW0 CB CB C 0 1 N N N -6.056 -9.415 7.832 2.897 1.326 0.179 CB PW0 18 PW0 CG CG C 0 1 N N N -7.020 -9.313 6.673 4.129 0.473 0.488 CG PW0 19 PW0 CD CD C 0 1 N N N -8.323 -8.574 6.964 4.810 1.004 1.724 CD PW0 20 PW0 OE1 OE1 O 0 1 N N N -8.258 -7.431 7.392 5.920 0.408 2.187 OE1 PW0 21 PW0 OE2 OE2 O 0 1 N N N -9.366 -9.119 6.705 4.356 1.966 2.297 OE2 PW0 22 PW0 C C C 0 1 N N N -4.181 -8.506 9.047 2.566 1.344 -2.389 C PW0 23 PW0 O O O 0 1 N N N -3.598 -9.561 8.909 3.400 2.220 -2.485 O PW0 24 PW0 OXT OXT O 0 1 N N N -3.968 -7.781 10.016 1.957 0.869 -3.493 OXT PW0 25 PW0 H2A1 H2A1 H 0 0 N N N -1.496 -2.049 5.755 -0.585 -5.571 -1.223 H2A1 PW0 26 PW0 H2A2 H2A2 H 0 0 N N N -1.953 -2.823 7.310 0.204 -5.556 0.372 H2A2 PW0 27 PW0 HO3 HO3 H 0 1 N N N -1.811 -4.967 7.557 1.764 -3.441 -0.748 HO3 PW0 28 PW0 H4A1 H4A1 H 0 1 N N N -4.941 -7.807 5.195 0.546 0.266 0.946 H4A1 PW0 29 PW0 H4A2 H4A2 H 0 1 N N N -3.348 -7.942 6.014 1.741 -1.052 0.885 H4A2 PW0 30 PW0 H6 H6 H 0 1 N N N -4.440 -3.840 2.834 -3.565 -1.814 0.008 H6 PW0 31 PW0 H5A1 H5A1 H 0 1 N N N -5.937 -5.647 2.693 -1.518 0.665 1.252 H5A1 PW0 32 PW0 H5A2 H5A2 H 0 1 N N N -6.128 -6.756 4.093 -1.423 0.835 -0.517 H5A2 PW0 33 PW0 HOP2 HOP2 H 0 1 N N N -4.264 -10.259 1.894 -6.119 2.509 0.145 HOP2 PW0 34 PW0 HB2 HB2 H 0 1 N N N -6.652 -9.475 8.755 3.203 2.358 0.010 HB2 PW0 35 PW0 HG1 HG1 H 0 1 N N N -7.274 -10.334 6.353 3.823 -0.559 0.658 HG1 PW0 36 PW0 HG2 HG2 H 0 1 N N N -6.509 -8.788 5.853 4.820 0.514 -0.353 HG2 PW0 37 PW0 HOE1 HOE1 H 0 1 N N N -9.134 -7.074 7.477 6.321 0.785 2.982 HOE1 PW0 38 PW0 HOXT HOXT H 0 1 N N N -3.315 -8.184 10.576 2.218 1.258 -4.339 HOXT PW0 39 PW0 H2A3 H2A3 H 0 0 N N N -0.622 -3.512 6.320 -1.541 -5.879 0.246 H2A3 PW0 40 PW0 HOP3 HOP3 H 0 1 N N N -7.448 -8.330 1.746 -4.115 1.962 2.523 HOP3 PW0 41 PW0 HB1 HB1 H 0 1 N N N -5.482 -10.345 7.705 2.206 1.285 1.020 HB1 PW0 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PW0 O3P P SING N N 1 PW0 O2P P SING N N 2 PW0 P O4P SING N N 3 PW0 P O1P DOUB N N 4 PW0 O4P C5A SING N N 5 PW0 C5A C5 SING N N 6 PW0 C6 C5 DOUB Y N 7 PW0 C6 N1 SING Y N 8 PW0 C5 C4 SING Y N 9 PW0 N1 C2 DOUB Y N 10 PW0 C4 C4A SING N N 11 PW0 C4 C3 DOUB Y N 12 PW0 C2 C3 SING Y N 13 PW0 C2 C2A SING N N 14 PW0 C4A N SING N N 15 PW0 C3 O3 SING N N 16 PW0 CG CD SING N N 17 PW0 CG CB SING N N 18 PW0 OE2 CD DOUB N N 19 PW0 CD OE1 SING N N 20 PW0 N CA DOUB N N 21 PW0 CB CA SING N N 22 PW0 CA C SING N N 23 PW0 O C DOUB N N 24 PW0 C OXT SING N N 25 PW0 C2A H2A1 SING N N 26 PW0 C2A H2A2 SING N N 27 PW0 O3 HO3 SING N N 28 PW0 C4A H4A1 SING N N 29 PW0 C4A H4A2 SING N N 30 PW0 C6 H6 SING N N 31 PW0 C5A H5A1 SING N N 32 PW0 C5A H5A2 SING N N 33 PW0 O2P HOP2 SING N N 34 PW0 CB HB2 SING N N 35 PW0 CG HG1 SING N N 36 PW0 CG HG2 SING N N 37 PW0 OE1 HOE1 SING N N 38 PW0 OXT HOXT SING N N 39 PW0 C2A H2A3 SING N N 40 PW0 O3P HOP3 SING N N 41 PW0 CB HB1 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PW0 InChI InChI 1.06 "InChI=1S/C13H17N2O9P/c1-7-12(18)9(8(4-14-7)6-24-25(21,22)23)5-15-10(13(19)20)2-3-11(16)17/h4,18H,2-3,5-6H2,1H3,(H,16,17)(H,19,20)(H2,21,22,23)" PW0 InChIKey InChI 1.06 AQYBBWUPMNWMHD-UHFFFAOYSA-N PW0 SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN=C(CCC(O)=O)C(O)=O)c1O" PW0 SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN=C(CCC(O)=O)C(O)=O)c1O" PW0 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CN=C(CCC(=O)O)C(=O)O)O" PW0 SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CN=C(CCC(=O)O)C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id PW0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylimino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PW0 "Create component" 2022-10-05 PDBE PW0 "Other modification" 2022-10-20 PDBE PW0 "Initial release" 2022-11-16 RCSB #