data_PXW # _chem_comp.id PXW _chem_comp.name "(1R,2R,4S,7E)-7-[amino(sulfanyl)methylidene]-2-{[(1P)-3-chloro-3'-(1-cyanocyclopropyl)[1,1'-biphenyl]-4-carbonyl]amino}-7-azabicyclo[2.2.1]heptan-7-ium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H24 Cl N4 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-05-31 _chem_comp.pdbx_modified_date 2023-01-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 451.992 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PXW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8D1T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PXW C10 C1 C 0 1 N N N 16.518 -9.444 0.284 -6.910 -1.761 0.183 C10 PXW 1 PXW C13 C2 C 0 1 N N N 17.461 -10.127 -0.647 -6.334 -2.784 -0.706 C13 PXW 2 PXW C15 C3 C 0 1 Y N N 14.612 -9.132 -1.156 -4.818 -0.398 0.063 C15 PXW 3 PXW C17 C4 C 0 1 Y N N 11.187 -8.727 -4.421 -0.586 -0.262 -0.371 C17 PXW 4 PXW C21 C5 C 0 1 N N R 7.710 -10.821 -6.783 3.703 -0.080 -0.806 C21 PXW 5 PXW C22 C6 C 0 1 N N N 7.599 -11.354 -8.030 4.229 -1.388 -1.448 C22 PXW 6 PXW C24 C7 C 0 1 N N N 7.266 -9.466 -8.979 4.214 -2.483 0.770 C24 PXW 7 PXW C26 C8 C 0 1 N N R 7.090 -9.580 -6.779 4.397 -0.057 0.589 C26 PXW 8 PXW C28 C9 C 0 1 N N N 4.771 -8.762 -7.600 6.934 -0.327 0.473 C28 PXW 9 PXW C02 C10 C 0 1 Y N N 10.999 -10.464 -2.852 -0.648 2.152 -0.201 C02 PXW 10 PXW C03 C11 C 0 1 Y N N 12.074 -10.007 -2.154 -2.018 2.105 -0.061 C03 PXW 11 PXW C04 C12 C 0 1 Y N N 12.707 -8.891 -2.606 -2.679 0.877 -0.075 C04 PXW 12 PXW C16 C13 C 0 1 Y N N 12.253 -8.250 -3.722 -1.955 -0.305 -0.231 C16 PXW 13 PXW C18 C14 C 0 1 Y N N 10.563 -9.864 -4.014 0.079 0.967 -0.357 C18 PXW 14 PXW C19 C15 C 0 1 N N N 9.337 -10.308 -4.803 1.547 1.015 -0.507 C19 PXW 15 PXW C23 C16 C 0 1 N N S 6.676 -10.576 -8.743 5.168 -1.977 -0.353 C23 PXW 16 PXW C25 C17 C 0 1 N N N 7.459 -8.785 -7.753 3.675 -1.162 1.418 C25 PXW 17 PXW C05 C18 C 0 1 Y N N 13.777 -8.368 -1.908 -4.153 0.828 0.076 C05 PXW 18 PXW C06 C19 C 0 1 Y N N 13.976 -7.023 -1.912 -4.880 2.007 0.231 C06 PXW 19 PXW C07 C20 C 0 1 Y N N 15.000 -6.440 -1.217 -6.253 1.955 0.371 C07 PXW 20 PXW C08 C21 C 0 1 Y N N 15.846 -7.215 -0.481 -6.906 0.736 0.357 C08 PXW 21 PXW C09 C22 C 0 1 Y N N 15.636 -8.541 -0.487 -6.189 -0.438 0.203 C09 PXW 22 PXW C12 C23 C 0 1 N N N 15.839 -10.379 1.266 -8.431 -1.740 0.343 C12 PXW 23 PXW C11 C24 C 0 1 N N N 16.989 -9.499 1.722 -7.548 -2.238 1.489 C11 PXW 24 PXW N20 N1 N 0 1 N N N 9.161 -10.423 -6.257 2.247 -0.127 -0.658 N20 PXW 25 PXW N27 N2 N 1 1 N N N 5.737 -9.875 -7.578 5.707 -0.720 0.270 N27 PXW 26 PXW N37 N3 N 0 1 N N N 4.695 -7.838 -6.668 7.176 0.887 1.074 N37 PXW 27 PXW O38 O1 O 0 1 N N N 8.450 -10.494 -4.107 2.125 2.084 -0.495 O38 PXW 28 PXW CL01 CL1 CL 0 0 N N N 10.286 -11.902 -2.226 0.176 3.680 -0.185 CL01 PXW 29 PXW N14 N4 N 0 1 N N N 18.186 -10.649 -1.350 -5.890 -3.573 -1.391 N14 PXW 30 PXW H1 H1 H 0 1 N N N 14.463 -10.200 -1.091 -4.260 -1.314 -0.062 H1 PXW 31 PXW H2 H2 H 0 1 N N N 10.837 -8.203 -5.298 -0.026 -1.178 -0.488 H2 PXW 32 PXW H3 H3 H 0 1 N N N 7.252 -11.482 -6.032 4.000 0.787 -1.397 H3 PXW 33 PXW H4 H4 H 0 1 N N N 7.242 -12.392 -7.964 3.405 -2.071 -1.656 H4 PXW 34 PXW H5 H5 H 0 1 N N N 8.576 -11.334 -8.535 4.786 -1.171 -2.360 H5 PXW 35 PXW H6 H6 H 0 1 N N N 8.240 -9.658 -9.453 3.392 -3.059 0.345 H6 PXW 36 PXW H7 H7 H 0 1 N N N 6.646 -8.853 -9.650 4.763 -3.076 1.502 H7 PXW 37 PXW H8 H8 H 0 1 N N N 6.907 -9.132 -5.791 4.463 0.921 1.066 H8 PXW 38 PXW H10 H10 H 0 1 N N N 12.415 -10.517 -1.265 -2.580 3.019 0.059 H10 PXW 39 PXW H11 H11 H 0 1 N N N 12.748 -7.350 -4.056 -2.468 -1.255 -0.242 H11 PXW 40 PXW H12 H12 H 0 1 N N N 6.089 -11.074 -9.529 5.908 -2.697 -0.702 H12 PXW 41 PXW H13 H13 H 0 1 N N N 8.521 -8.522 -7.637 2.593 -1.095 1.311 H13 PXW 42 PXW H14 H14 H 0 1 N N N 6.850 -7.869 -7.736 3.962 -1.105 2.469 H14 PXW 43 PXW H15 H15 H 0 1 N N N 13.305 -6.396 -2.481 -4.371 2.959 0.242 H15 PXW 44 PXW H16 H16 H 0 1 N N N 15.138 -5.369 -1.251 -6.817 2.868 0.491 H16 PXW 45 PXW H17 H17 H 0 1 N N N 16.655 -6.779 0.086 -7.980 0.700 0.467 H17 PXW 46 PXW H18 H18 H 0 1 N N N 14.815 -10.168 1.609 -8.911 -0.769 0.463 H18 PXW 47 PXW H19 H19 H 0 1 N N N 15.980 -11.466 1.178 -9.006 -2.484 -0.209 H19 PXW 48 PXW H20 H20 H 0 1 N N N 17.963 -9.949 1.965 -7.541 -3.309 1.690 H20 PXW 49 PXW H21 H21 H 0 1 N N N 16.799 -8.651 2.396 -7.447 -1.595 2.363 H21 PXW 50 PXW H22 H22 H 0 1 N N N 9.918 -10.259 -6.889 1.785 -0.981 -0.667 H22 PXW 51 PXW H23 H23 H 0 1 N N N 3.885 -7.255 -6.607 6.435 1.450 1.347 H23 PXW 52 PXW S1 S1 S 0 1 N Y N 3.510 -9.025 -8.751 8.280 -1.349 -0.023 S1 PXW 53 PXW H9 H9 H 0 1 N N N 5.447 -7.718 -6.020 8.089 1.180 1.225 H9 PXW 54 PXW H24 H24 H 0 1 N N N 2.788 -7.953 -8.611 9.363 -0.542 0.383 H24 PXW 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PXW C24 C23 SING N N 1 PXW C24 C25 SING N N 2 PXW C23 C22 SING N N 3 PXW C23 N27 SING N N 4 PXW C22 C21 SING N N 5 PXW C25 C26 SING N N 6 PXW C28 N27 DOUB N E 7 PXW C28 N37 SING N N 8 PXW N27 C26 SING N N 9 PXW C21 C26 SING N N 10 PXW C21 N20 SING N N 11 PXW N20 C19 SING N N 12 PXW C19 O38 DOUB N N 13 PXW C19 C18 SING N N 14 PXW C17 C18 DOUB Y N 15 PXW C17 C16 SING Y N 16 PXW C18 C02 SING Y N 17 PXW C16 C04 DOUB Y N 18 PXW C02 CL01 SING N N 19 PXW C02 C03 DOUB Y N 20 PXW C04 C03 SING Y N 21 PXW C04 C05 SING N N 22 PXW C06 C05 DOUB Y N 23 PXW C06 C07 SING Y N 24 PXW C05 C15 SING Y N 25 PXW N14 C13 TRIP N N 26 PXW C07 C08 DOUB Y N 27 PXW C15 C09 DOUB Y N 28 PXW C13 C10 SING N N 29 PXW C09 C08 SING Y N 30 PXW C09 C10 SING N N 31 PXW C10 C12 SING N N 32 PXW C10 C11 SING N N 33 PXW C12 C11 SING N N 34 PXW C15 H1 SING N N 35 PXW C17 H2 SING N N 36 PXW C21 H3 SING N N 37 PXW C22 H4 SING N N 38 PXW C22 H5 SING N N 39 PXW C24 H6 SING N N 40 PXW C24 H7 SING N N 41 PXW C26 H8 SING N N 42 PXW C03 H10 SING N N 43 PXW C16 H11 SING N N 44 PXW C23 H12 SING N N 45 PXW C25 H13 SING N N 46 PXW C25 H14 SING N N 47 PXW C06 H15 SING N N 48 PXW C07 H16 SING N N 49 PXW C08 H17 SING N N 50 PXW C12 H18 SING N N 51 PXW C12 H19 SING N N 52 PXW C11 H20 SING N N 53 PXW C11 H21 SING N N 54 PXW N20 H22 SING N N 55 PXW N37 H23 SING N N 56 PXW C28 S1 SING N N 57 PXW N37 H9 SING N N 58 PXW S1 H24 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PXW SMILES ACDLabs 12.01 "S/C(N)=[N+]1\C2CC(NC(=O)c3ccc(cc3Cl)c3cccc(c3)C3(C#N)CC3)C1CC2" PXW InChI InChI 1.03 "InChI=1S/C24H23ClN4OS/c25-19-11-15(14-2-1-3-16(10-14)24(13-26)8-9-24)4-6-18(19)22(30)28-20-12-17-5-7-21(20)29(17)23(27)31/h1-4,6,10-11,17,20-21H,5,7-9,12H2,(H3,27,28,30,31)/p+1/t17-,20+,21+/m0/s1" PXW InChIKey InChI 1.03 QYJCMFNKFUMQPQ-IOMROCGXSA-O PXW SMILES_CANONICAL CACTVS 3.385 "N\C(S)=[N+]/1[C@H]2CC[C@@H]/1[C@@H](C2)NC(=O)c3ccc(cc3Cl)c4cccc(c4)C5(CC5)C#N" PXW SMILES CACTVS 3.385 "NC(S)=[N+]1[CH]2CC[CH]1[CH](C2)NC(=O)c3ccc(cc3Cl)c4cccc(c4)C5(CC5)C#N" PXW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C2(CC2)C#N)c3ccc(c(c3)Cl)C(=O)N[C@@H]4C[C@@H]5CC[C@H]4[N+]5=C(N)S" PXW SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C2(CC2)C#N)c3ccc(c(c3)Cl)C(=O)NC4CC5CCC4[N+]5=C(N)S" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PXW "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2R,4S,7E)-7-[amino(sulfanyl)methylidene]-2-{[(1P)-3-chloro-3'-(1-cyanocyclopropyl)[1,1'-biphenyl]-4-carbonyl]amino}-7-azabicyclo[2.2.1]heptan-7-ium" PXW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{R},2~{R},4~{S})-7-[azanyl(sulfanyl)methylidene]-7-azoniabicyclo[2.2.1]heptan-2-yl]-2-chloranyl-4-[3-(1-cyanocyclopropyl)phenyl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PXW "Create component" 2022-05-31 RCSB PXW "Initial release" 2023-02-01 RCSB #