data_PYH # _chem_comp.id PYH _chem_comp.name "N~6~-{[(2R,3R)-3-METHYL-3,4-DIHYDRO-2H-PYRROL-2-YL]CARBONYL}-L-LYSINE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C12 H21 N3 O3" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms PYRROLYSINE _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-08-30 _chem_comp.pdbx_modified_date 2014-05-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status OBS _chem_comp.pdbx_replaced_by PYL _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 255.313 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PYH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PYH CAA CAA C 0 1 N N N 3.704 72.211 1.136 3.980 2.442 -0.324 CAA PYH 1 PYH CAP CAP C 0 1 N N R 4.671 71.449 2.044 4.412 1.125 0.325 CAP PYH 2 PYH CAJ CAJ C 0 1 N N N 3.984 70.864 3.276 5.952 0.975 0.313 CAJ PYH 3 PYH CAF CAF C 0 1 N N N 5.175 70.696 4.223 6.169 -0.493 0.022 CAF PYH 4 PYH NAL NAL N 0 1 N N N 6.149 71.534 3.873 5.110 -1.035 -0.430 NAL PYH 5 PYH CAR CAR C 0 1 N N R 5.739 72.323 2.701 3.995 -0.087 -0.540 CAR PYH 6 PYH CAO CAO C 0 1 N N N 6.927 72.567 1.767 2.729 -0.703 -0.004 CAO PYH 7 PYH OAD OAD O 0 1 N N N 6.764 72.855 0.582 2.784 -1.700 0.685 OAD PYH 8 PYH NZ NZ N 0 1 N N N 8.114 72.417 2.351 1.535 -0.146 -0.288 NZ PYH 9 PYH CE CE C 0 1 N N N 9.389 72.611 1.647 0.304 -0.745 0.234 CE PYH 10 PYH CD CD C 0 1 N N N 10.162 73.741 2.330 -0.900 0.075 -0.233 CD PYH 11 PYH CG CG C 0 1 N N N 9.403 75.065 2.218 -2.185 -0.550 0.312 CG PYH 12 PYH CB CB C 0 1 N N N 10.049 76.170 3.058 -3.389 0.270 -0.155 CB PYH 13 PYH CA CA C 0 1 N N S 9.934 75.876 4.556 -4.675 -0.355 0.390 CA PYH 14 PYH C C C 0 1 N N N 10.671 76.956 5.350 -5.849 0.520 0.034 C PYH 15 PYH OXT OXT O 0 1 N Y N 11.889 76.767 5.558 -6.114 1.616 0.762 OXT PYH 16 PYH O O O 0 1 N N N 9.999 77.938 5.732 -6.552 0.234 -0.906 O PYH 17 PYH N N N 0 1 N N N 8.521 75.845 4.961 -4.860 -1.687 -0.201 N PYH 18 PYH HXT HXT H 0 1 N Y N 12.241 77.493 6.060 -6.878 2.146 0.495 HXT PYH 19 PYH HA HA H 0 1 N N N 10.400 74.901 4.764 -4.604 -0.445 1.474 HA PYH 20 PYH H H H 0 1 N N N 8.459 75.652 5.940 -5.668 -2.148 0.192 H PYH 21 PYH HN2 HN2 H 0 1 N Y N 8.100 76.731 4.768 -4.929 -1.631 -1.206 HN2 PYH 22 PYH HB1 HB1 H 0 1 N N N 11.113 76.247 2.790 -3.298 1.292 0.214 HB1 PYH 23 PYH HB2 HB2 H 0 1 N N N 9.546 77.124 2.841 -3.423 0.279 -1.244 HB2 PYH 24 PYH HG1 HG1 H 0 1 N N N 9.393 75.380 1.164 -2.277 -1.572 -0.057 HG1 PYH 25 PYH HG2 HG2 H 0 1 N N N 8.370 74.913 2.565 -2.152 -0.558 1.401 HG2 PYH 26 PYH HD1 HD1 H 0 1 N N N 10.299 73.493 3.393 -0.808 1.097 0.135 HD1 PYH 27 PYH HD2 HD2 H 0 1 N N N 11.145 73.847 1.849 -0.933 0.084 -1.323 HD2 PYH 28 PYH HE1 HE1 H 0 1 N N N 9.978 71.683 1.687 0.213 -1.767 -0.135 HE1 PYH 29 PYH HE2 HE2 H 0 1 N N N 9.195 72.877 0.597 0.338 -0.753 1.323 HE2 PYH 30 PYH HZ HZ H 0 1 N N N 8.139 72.159 3.317 1.491 0.651 -0.839 HZ PYH 31 PYH HAR HAR H 0 1 N N N 5.301 73.283 3.010 3.859 0.218 -1.578 HAR PYH 32 PYH HAF HAF H 0 1 N N N 5.219 70.003 5.050 7.102 -1.015 0.178 HAF PYH 33 PYH HAJ1 HAJ1 H 0 0 N N N 3.235 71.556 3.688 6.391 1.590 -0.473 HAJ1 PYH 34 PYH HAJ2 HAJ2 H 0 0 N N N 3.507 69.899 3.052 6.371 1.239 1.284 HAJ2 PYH 35 PYH HAP HAP H 0 1 N N N 5.154 70.643 1.473 4.016 1.041 1.337 HAP PYH 36 PYH HAA1 HAA1 H 0 0 N N N 4.251 72.609 0.269 4.346 2.478 -1.350 HAA1 PYH 37 PYH HAA2 HAA2 H 0 0 N N N 2.913 71.530 0.790 2.892 2.507 -0.324 HAA2 PYH 38 PYH HAA3 HAA3 H 0 0 N N N 3.252 73.042 1.697 4.395 3.278 0.239 HAA3 PYH 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PYH CAA CAP SING N N 1 PYH CAA HAA1 SING N N 2 PYH CAA HAA2 SING N N 3 PYH CAA HAA3 SING N N 4 PYH CAP CAJ SING N N 5 PYH CAP CAR SING N N 6 PYH CAP HAP SING N N 7 PYH CAJ CAF SING N N 8 PYH CAJ HAJ1 SING N N 9 PYH CAJ HAJ2 SING N N 10 PYH CAF NAL DOUB N N 11 PYH CAF HAF SING N N 12 PYH NAL CAR SING N N 13 PYH CAR CAO SING N N 14 PYH CAR HAR SING N N 15 PYH CAO NZ SING N N 16 PYH CAO OAD DOUB N N 17 PYH NZ CE SING N N 18 PYH NZ HZ SING N N 19 PYH CE CD SING N N 20 PYH CE HE1 SING N N 21 PYH CE HE2 SING N N 22 PYH CD CG SING N N 23 PYH CD HD1 SING N N 24 PYH CD HD2 SING N N 25 PYH CG CB SING N N 26 PYH CG HG1 SING N N 27 PYH CG HG2 SING N N 28 PYH CB CA SING N N 29 PYH CB HB1 SING N N 30 PYH CB HB2 SING N N 31 PYH CA C SING N N 32 PYH CA HA SING N N 33 PYH CA N SING N N 34 PYH C OXT SING N N 35 PYH C O DOUB N N 36 PYH OXT HXT SING N N 37 PYH N H SING N N 38 PYH N HN2 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PYH SMILES ACDLabs 12.01 "O=C(NCCCCC(C(=O)O)N)C1N=CCC1C" PYH InChI InChI 1.03 "InChI=1S/C12H21N3O3/c1-8-5-7-14-10(8)11(16)15-6-3-2-4-9(13)12(17)18/h7-10H,2-6,13H2,1H3,(H,15,16)(H,17,18)/t8-,9+,10-/m1/s1" PYH InChIKey InChI 1.03 ZFOMKMMPBOQKMC-KXUCPTDWSA-N PYH SMILES_CANONICAL CACTVS 3.370 "C[C@@H]1CC=N[C@H]1C(=O)NCCCC[C@H](N)C(O)=O" PYH SMILES CACTVS 3.370 "C[CH]1CC=N[CH]1C(=O)NCCCC[CH](N)C(O)=O" PYH SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1CC=N[C@H]1C(=O)NCCCC[C@@H](C(=O)O)N" PYH SMILES "OpenEye OEToolkits" 1.7.6 "CC1CC=NC1C(=O)NCCCCC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PYH "SYSTEMATIC NAME" ACDLabs 12.01 "N~6~-{[(2R,3R)-3-methyl-3,4-dihydro-2H-pyrrol-2-yl]carbonyl}-L-lysine" PYH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-6-[[(2R,3R)-3-methyl-3,4-dihydro-2H-pyrrol-2-yl]carbonylamino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PYH "Create component" 2006-08-30 RCSB PYH "Modify descriptor" 2011-06-04 RCSB PYH "Obsolete component" 2014-05-06 RCSB #