data_PZ5 # _chem_comp.id PZ5 _chem_comp.name 5-hept-6-ynyl-6-phenyl-phenanthridin-5-ium-3,8-diamine _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H26 N3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2015-10-29 _chem_comp.pdbx_modified_date 2016-01-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 380.505 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PZ5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5EIH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PZ5 C29 C1 C 0 1 N N N 43.297 22.463 0.298 -7.693 -0.152 2.183 C29 PZ5 1 PZ5 C28 C2 C 0 1 N N N 42.367 22.263 1.157 -6.933 -0.174 1.289 C28 PZ5 2 PZ5 C27 C3 C 0 1 N N N 41.299 22.008 2.143 -5.980 -0.202 0.168 C27 PZ5 3 PZ5 C26 C4 C 0 1 N N N 40.085 22.923 1.943 -4.563 0.032 0.697 C26 PZ5 4 PZ5 C25 C5 C 0 1 N N N 38.921 22.621 2.902 -3.572 0.003 -0.468 C25 PZ5 5 PZ5 C21 C6 C 0 1 N N N 39.152 23.072 4.355 -2.156 0.237 0.061 C21 PZ5 6 PZ5 C20 C7 C 0 1 N N N 38.735 24.523 4.617 -1.165 0.208 -1.105 C20 PZ5 7 PZ5 N2 N1 N 1 1 Y N N 39.254 25.118 5.884 0.192 0.432 -0.598 N2 PZ5 8 PZ5 C7 C8 C 0 1 Y N N 40.507 25.843 5.873 0.940 -0.615 -0.339 C7 PZ5 9 PZ5 C8 C9 C 0 1 Y N N 41.415 25.869 4.664 0.400 -1.975 -0.563 C8 PZ5 10 PZ5 C13 C10 C 0 1 Y N N 41.318 26.886 3.698 -0.021 -2.361 -1.836 C13 PZ5 11 PZ5 C12 C11 C 0 1 Y N N 42.187 26.901 2.592 -0.524 -3.629 -2.039 C12 PZ5 12 PZ5 C11 C12 C 0 1 Y N N 43.171 25.909 2.444 -0.611 -4.519 -0.983 C11 PZ5 13 PZ5 C10 C13 C 0 1 Y N N 43.282 24.895 3.401 -0.195 -4.142 0.282 C10 PZ5 14 PZ5 C9 C14 C 0 1 Y N N 42.408 24.881 4.505 0.315 -2.879 0.496 C9 PZ5 15 PZ5 C14 C15 C 0 1 Y N N 40.972 26.543 7.129 2.305 -0.453 0.169 C14 PZ5 16 PZ5 C16 C16 C 0 1 Y N N 40.107 26.522 8.358 2.798 0.857 0.374 C16 PZ5 17 PZ5 C17 C17 C 0 1 Y N N 40.552 27.126 9.540 4.091 1.048 0.857 C17 PZ5 18 PZ5 C18 C18 C 0 1 Y N N 41.809 27.741 9.565 4.878 -0.035 1.130 C18 PZ5 19 PZ5 C19 C19 C 0 1 Y N N 42.628 27.778 8.423 4.402 -1.332 0.931 C19 PZ5 20 PZ5 N3 N2 N 0 1 N N N 43.796 28.462 8.479 5.226 -2.422 1.217 N3 PZ5 21 PZ5 C15 C20 C 0 1 Y N N 42.222 27.181 7.216 3.122 -1.547 0.454 C15 PZ5 22 PZ5 C4 C21 C 0 1 Y N N 38.800 25.810 8.285 1.904 1.978 0.063 C4 PZ5 23 PZ5 C6 C22 C 0 1 Y N N 38.436 25.125 6.991 0.607 1.696 -0.428 C6 PZ5 24 PZ5 C3 C23 C 0 1 Y N N 37.950 25.726 9.404 2.315 3.300 0.238 C3 PZ5 25 PZ5 C2 C24 C 0 1 Y N N 36.743 25.034 9.315 1.464 4.325 -0.059 C2 PZ5 26 PZ5 C1 C25 C 0 1 Y N N 36.393 24.390 8.117 0.179 4.064 -0.539 C1 PZ5 27 PZ5 N1 N3 N 0 1 N N N 35.266 23.645 8.022 -0.677 5.125 -0.836 N1 PZ5 28 PZ5 C5 C26 C 0 1 Y N N 37.195 24.474 6.976 -0.249 2.766 -0.731 C5 PZ5 29 PZ5 H1 H1 H 0 1 N N N 44.066 22.628 -0.412 -8.373 -0.132 2.983 H1 PZ5 30 PZ5 H2 H2 H 0 1 N N N 40.972 20.962 2.047 -6.028 -1.172 -0.326 H2 PZ5 31 PZ5 H3 H3 H 0 1 N N N 41.704 22.174 3.152 -6.235 0.582 -0.546 H3 PZ5 32 PZ5 H4 H4 H 0 1 N N N 40.404 23.964 2.101 -4.515 1.003 1.191 H4 PZ5 33 PZ5 H5 H5 H 0 1 N N N 39.725 22.802 0.911 -4.308 -0.751 1.410 H5 PZ5 34 PZ5 H6 H6 H 0 1 N N N 38.023 23.132 2.523 -3.620 -0.967 -0.962 H6 PZ5 35 PZ5 H7 H7 H 0 1 N N N 38.751 21.534 2.903 -3.827 0.787 -1.182 H7 PZ5 36 PZ5 H8 H8 H 0 1 N N N 38.570 22.417 5.020 -2.108 1.207 0.554 H8 PZ5 37 PZ5 H9 H9 H 0 1 N N N 40.223 22.970 4.585 -1.901 -0.547 0.774 H9 PZ5 38 PZ5 H10 H10 H 0 1 N N N 39.098 25.137 3.780 -1.213 -0.763 -1.598 H10 PZ5 39 PZ5 H11 H11 H 0 1 N N N 37.636 24.560 4.650 -1.420 0.991 -1.818 H11 PZ5 40 PZ5 H12 H12 H 0 1 N N N 40.572 27.660 3.806 0.046 -1.667 -2.661 H12 PZ5 41 PZ5 H13 H13 H 0 1 N N N 42.097 27.681 1.851 -0.851 -3.929 -3.024 H13 PZ5 42 PZ5 H14 H14 H 0 1 N N N 43.839 25.929 1.595 -1.005 -5.511 -1.146 H14 PZ5 43 PZ5 H15 H15 H 0 1 N N N 44.034 24.127 3.294 -0.266 -4.841 1.103 H15 PZ5 44 PZ5 H16 H16 H 0 1 N N N 42.500 24.099 5.244 0.639 -2.586 1.484 H16 PZ5 45 PZ5 H17 H17 H 0 1 N N N 39.931 27.117 10.424 4.470 2.047 1.014 H17 PZ5 46 PZ5 H18 H18 H 0 1 N N N 42.157 28.196 10.480 5.880 0.115 1.504 H18 PZ5 47 PZ5 H19 H19 H 0 1 N N N 43.930 28.818 9.404 6.125 -2.276 1.553 H19 PZ5 48 PZ5 H20 H20 H 0 1 N N N 44.552 27.851 8.245 4.900 -3.326 1.081 H20 PZ5 49 PZ5 H21 H21 H 0 1 N N N 42.872 27.213 6.354 2.759 -2.553 0.301 H21 PZ5 50 PZ5 H22 H22 H 0 1 N N N 38.233 26.198 10.333 3.307 3.512 0.609 H22 PZ5 51 PZ5 H23 H23 H 0 1 N N N 36.079 24.993 10.165 1.787 5.346 0.079 H23 PZ5 52 PZ5 H24 H24 H 0 1 N N N 34.780 23.662 8.896 -0.378 6.039 -0.709 H24 PZ5 53 PZ5 H25 H25 H 0 1 N N N 34.677 24.021 7.306 -1.570 4.949 -1.169 H25 PZ5 54 PZ5 H26 H26 H 0 1 N N N 36.849 24.025 6.057 -1.244 2.573 -1.104 H26 PZ5 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PZ5 C29 C28 TRIP N N 1 PZ5 C28 C27 SING N N 2 PZ5 C26 C27 SING N N 3 PZ5 C26 C25 SING N N 4 PZ5 C11 C12 DOUB Y N 5 PZ5 C11 C10 SING Y N 6 PZ5 C12 C13 SING Y N 7 PZ5 C25 C21 SING N N 8 PZ5 C10 C9 DOUB Y N 9 PZ5 C13 C8 DOUB Y N 10 PZ5 C21 C20 SING N N 11 PZ5 C9 C8 SING Y N 12 PZ5 C20 N2 SING N N 13 PZ5 C8 C7 SING N N 14 PZ5 C7 N2 DOUB Y N 15 PZ5 C7 C14 SING Y N 16 PZ5 N2 C6 SING Y N 17 PZ5 C5 C6 DOUB Y N 18 PZ5 C5 C1 SING Y N 19 PZ5 C6 C4 SING Y N 20 PZ5 C14 C15 DOUB Y N 21 PZ5 C14 C16 SING Y N 22 PZ5 C15 C19 SING Y N 23 PZ5 N1 C1 SING N N 24 PZ5 C1 C2 DOUB Y N 25 PZ5 C4 C16 SING Y N 26 PZ5 C4 C3 DOUB Y N 27 PZ5 C16 C17 DOUB Y N 28 PZ5 C19 N3 SING N N 29 PZ5 C19 C18 DOUB Y N 30 PZ5 C2 C3 SING Y N 31 PZ5 C17 C18 SING Y N 32 PZ5 C29 H1 SING N N 33 PZ5 C27 H2 SING N N 34 PZ5 C27 H3 SING N N 35 PZ5 C26 H4 SING N N 36 PZ5 C26 H5 SING N N 37 PZ5 C25 H6 SING N N 38 PZ5 C25 H7 SING N N 39 PZ5 C21 H8 SING N N 40 PZ5 C21 H9 SING N N 41 PZ5 C20 H10 SING N N 42 PZ5 C20 H11 SING N N 43 PZ5 C13 H12 SING N N 44 PZ5 C12 H13 SING N N 45 PZ5 C11 H14 SING N N 46 PZ5 C10 H15 SING N N 47 PZ5 C9 H16 SING N N 48 PZ5 C17 H17 SING N N 49 PZ5 C18 H18 SING N N 50 PZ5 N3 H19 SING N N 51 PZ5 N3 H20 SING N N 52 PZ5 C15 H21 SING N N 53 PZ5 C3 H22 SING N N 54 PZ5 C2 H23 SING N N 55 PZ5 N1 H24 SING N N 56 PZ5 N1 H25 SING N N 57 PZ5 C5 H26 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PZ5 InChI InChI 1.03 "InChI=1S/C26H25N3/c1-2-3-4-5-9-16-29-25-18-21(28)13-15-23(25)22-14-12-20(27)17-24(22)26(29)19-10-7-6-8-11-19/h1,6-8,10-15,17-18,28H,3-5,9,16,27H2/p+1" PZ5 InChIKey InChI 1.03 WJXZOVZRCNSPKF-UHFFFAOYSA-O PZ5 SMILES_CANONICAL CACTVS 3.385 "Nc1ccc2c3ccc(N)cc3[n+](CCCCCC#C)c(c4ccccc4)c2c1" PZ5 SMILES CACTVS 3.385 "Nc1ccc2c3ccc(N)cc3[n+](CCCCCC#C)c(c4ccccc4)c2c1" PZ5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C#CCCCCC[n+]1c2cc(ccc2c3ccc(cc3c1c4ccccc4)N)N" PZ5 SMILES "OpenEye OEToolkits" 2.0.4 "C#CCCCCC[n+]1c2cc(ccc2c3ccc(cc3c1c4ccccc4)N)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PZ5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 5-hept-6-ynyl-6-phenyl-phenanthridin-5-ium-3,8-diamine # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PZ5 "Create component" 2015-10-29 EBI PZ5 "Initial release" 2016-01-20 RCSB #