data_PZ7 # _chem_comp.id PZ7 _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-imidazo[2,1-f]purin-3-yl-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[(1~{S})-1-[methyl-[2,2,2-tris(fluoranyl)ethylcarbamoyl]amino]ethyl]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H36 F3 N8 O14 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-05-31 _chem_comp.pdbx_modified_date 2022-09-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 827.573 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PZ7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8D0I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PZ7 C35 C1 C 0 1 Y N N -7.768 13.906 32.606 -9.429 -1.916 3.127 C35 PZ7 1 PZ7 C33 C2 C 0 1 Y N N -6.507 14.736 30.800 -8.372 -1.092 1.240 C33 PZ7 2 PZ7 C31 C3 C 0 1 N N R -5.151 13.695 28.962 -6.187 -1.587 0.061 C31 PZ7 3 PZ7 O30 O1 O 0 1 N N N -3.558 13.811 29.115 -5.274 -0.785 -0.720 O30 PZ7 4 PZ7 C29 C4 C 0 1 N N R -3.057 13.681 27.964 -4.299 -1.716 -1.240 C29 PZ7 5 PZ7 C28 C5 C 0 1 N N N -1.744 14.530 27.890 -3.594 -1.121 -2.460 C28 PZ7 6 PZ7 O26 O2 O 0 1 N N N 0.357 16.528 28.713 -1.005 -0.020 -3.823 O26 PZ7 7 PZ7 O24 O3 O 0 1 N N N 1.449 14.191 29.008 -1.078 1.970 -2.271 O24 PZ7 8 PZ7 C20 C6 C 0 1 N N N 3.521 11.869 30.144 2.103 4.160 -1.270 C20 PZ7 9 PZ7 C19 C7 C 0 1 N N R 4.095 11.228 31.439 2.508 4.456 0.176 C19 PZ7 10 PZ7 C17 C8 C 0 1 N N R 2.375 10.196 32.742 3.922 3.553 1.772 C17 PZ7 11 PZ7 C15 C9 C 0 1 Y N N 0.720 11.825 32.150 5.143 2.217 3.350 C15 PZ7 12 PZ7 C13 C10 C 0 1 Y N N -1.653 11.300 32.008 6.104 0.109 2.774 C13 PZ7 13 PZ7 C01 C11 C 0 1 N N N -3.540 12.764 32.785 7.888 -0.797 4.238 C01 PZ7 14 PZ7 C02 C12 C 0 1 N N S -3.120 11.727 31.744 6.881 -1.130 3.136 C02 PZ7 15 PZ7 C04 C13 C 0 1 N N N -4.750 10.230 33.149 8.659 -0.813 1.353 C04 PZ7 16 PZ7 C05 C14 C 0 1 N N N -4.214 9.703 30.658 7.273 -2.816 1.420 C05 PZ7 17 PZ7 C07 C15 C 0 1 N N N -5.333 7.615 29.641 7.580 -4.566 -0.247 C07 PZ7 18 PZ7 C08 C16 C 0 1 N N N -4.145 6.531 29.639 8.469 -4.838 -1.462 C08 PZ7 19 PZ7 C14 C17 C 0 1 Y N N -0.594 12.233 31.900 5.863 1.097 3.717 C14 PZ7 20 PZ7 C37 C18 C 0 1 Y N N -8.855 15.645 34.082 -11.660 -0.916 3.694 C37 PZ7 21 PZ7 C38 C19 C 0 1 Y N N -8.858 17.060 34.025 -12.368 0.050 3.073 C38 PZ7 22 PZ7 C40 C20 C 0 1 Y N N -7.650 16.266 32.354 -10.550 -0.209 1.927 C40 PZ7 23 PZ7 C41 C21 C 0 1 Y N N -6.811 16.058 31.184 -9.424 -0.206 0.994 C41 PZ7 24 PZ7 C43 C22 C 0 1 Y N N -5.533 16.156 29.387 -7.962 0.087 -0.576 C43 PZ7 25 PZ7 C44 C23 C 0 1 N N R -5.422 13.699 27.684 -6.389 -2.875 -0.767 C44 PZ7 26 PZ7 C46 C24 C 0 1 N N S -4.181 14.204 27.020 -5.118 -2.962 -1.643 C46 PZ7 27 PZ7 C50 C25 C 0 1 N N S 4.129 9.642 31.258 3.750 5.368 0.196 C50 PZ7 28 PZ7 C52 C26 C 0 1 N N R 2.828 9.188 31.967 4.805 4.553 0.983 C52 PZ7 29 PZ7 C54 C27 C 0 1 Y N N 0.045 9.658 32.594 4.901 1.437 1.196 C54 PZ7 30 PZ7 C55 C28 C 0 1 Y N N -1.318 10.008 32.357 5.609 0.287 1.491 C55 PZ7 31 PZ7 F09 F1 F 0 1 N N N -2.909 7.117 29.790 9.810 -4.851 -1.065 F09 PZ7 32 PZ7 F10 F2 F 0 1 N N N -4.161 5.834 28.453 8.134 -6.078 -2.016 F10 PZ7 33 PZ7 F11 F3 F 0 1 N N N -4.193 5.659 30.689 8.274 -3.833 -2.416 F11 PZ7 34 PZ7 N03 N1 N 0 1 N N N -4.013 10.568 31.842 7.595 -1.621 1.954 N03 PZ7 35 PZ7 N06 N2 N 0 1 N N N -5.126 8.538 30.787 7.930 -3.267 0.334 N06 PZ7 36 PZ7 N16 N3 N 1 1 Y N N 1.006 10.563 32.486 4.687 2.353 2.121 N16 PZ7 37 PZ7 N32 N4 N 0 1 Y N N -5.726 14.831 29.687 -7.462 -0.887 0.233 N32 PZ7 38 PZ7 N34 N5 N 0 1 Y N N -7.000 13.671 31.520 -8.425 -1.910 2.300 N34 PZ7 39 PZ7 N36 N6 N 0 1 Y N N -8.090 15.195 33.020 -10.504 -1.093 2.980 N36 PZ7 40 PZ7 N39 N7 N 0 1 Y N N -8.111 17.414 32.955 -11.678 0.466 2.004 N39 PZ7 41 PZ7 N42 N8 N 0 1 Y N N -6.189 16.901 30.278 -9.115 0.488 -0.121 N42 PZ7 42 PZ7 O12 O4 O 0 1 N N N -3.650 9.940 29.629 6.390 -3.486 1.919 O12 PZ7 43 PZ7 O18 O5 O 0 1 N N N 3.331 11.505 32.451 2.864 3.233 0.843 O18 PZ7 44 PZ7 O21 O6 O 0 1 N N N 3.575 13.272 30.399 0.895 3.398 -1.280 O21 PZ7 45 PZ7 O23 O7 O 0 1 N N N 3.708 14.014 27.880 1.144 2.143 -3.456 O23 PZ7 46 PZ7 O27 O8 O 0 1 N N N -1.150 14.457 29.148 -2.808 0.002 -2.057 O27 PZ7 47 PZ7 O45 O9 O 0 1 N N N -5.678 12.264 27.261 -6.486 -4.013 0.092 O45 PZ7 48 PZ7 O47 O10 O 0 1 N N N -4.062 13.671 25.737 -4.389 -4.156 -1.351 O47 PZ7 49 PZ7 O48 O11 O 0 1 N N N 0.290 15.537 30.956 -2.903 1.616 -4.130 O48 PZ7 50 PZ7 O49 O12 O 0 1 N N N 3.487 15.731 29.677 -0.333 4.190 -3.466 O49 PZ7 51 PZ7 O51 O13 O 0 1 N N N 5.270 9.127 31.762 3.459 6.594 0.871 O51 PZ7 52 PZ7 O53 O14 O 0 1 N N N 3.046 7.975 32.781 5.540 5.396 1.873 O53 PZ7 53 PZ7 P22 P1 P 0 1 N N N 3.073 14.363 29.204 0.178 2.908 -2.637 P22 PZ7 54 PZ7 P25 P2 P 0 1 N N N 0.253 15.238 29.466 -1.929 0.872 -3.086 P25 PZ7 55 PZ7 H1 H1 H 0 1 N N N -8.144 13.066 33.171 -9.411 -2.603 3.960 H1 PZ7 56 PZ7 H2 H2 H 0 1 N N N -5.465 12.757 29.444 -5.750 -1.822 1.031 H2 PZ7 57 PZ7 H3 H3 H 0 1 N N N -2.823 12.639 27.699 -3.572 -1.972 -0.470 H3 PZ7 58 PZ7 H4 H4 H 0 1 N N N -1.068 14.117 27.127 -2.946 -1.875 -2.908 H4 PZ7 59 PZ7 H5 H5 H 0 1 N N N -1.982 15.575 27.643 -4.338 -0.802 -3.190 H5 PZ7 60 PZ7 H6 H6 H 0 1 N N N 2.485 11.543 29.973 1.945 5.098 -1.802 H6 PZ7 61 PZ7 H7 H7 H 0 1 N N N 4.137 11.606 29.272 2.895 3.593 -1.760 H7 PZ7 62 PZ7 H8 H8 H 0 1 N N N 5.128 11.580 31.580 1.683 4.937 0.700 H8 PZ7 63 PZ7 H9 H9 H 0 1 N N N 2.491 9.948 33.807 3.517 4.023 2.668 H9 PZ7 64 PZ7 H10 H10 H 0 1 N N N 1.521 12.545 32.070 4.947 2.989 4.081 H10 PZ7 65 PZ7 H11 H11 H 0 1 N N N -2.876 13.639 32.720 8.575 -0.028 3.883 H11 PZ7 66 PZ7 H12 H12 H 0 1 N N N -4.577 13.076 32.594 7.357 -0.432 5.117 H12 PZ7 67 PZ7 H13 H13 H 0 1 N N N -3.469 12.324 33.790 8.450 -1.693 4.500 H13 PZ7 68 PZ7 H14 H14 H 0 1 N N N -3.188 12.172 30.741 6.195 -1.899 3.491 H14 PZ7 69 PZ7 H15 H15 H 0 1 N N N -4.488 10.970 33.920 9.625 -1.136 1.743 H15 PZ7 70 PZ7 H16 H16 H 0 1 N N N -5.836 10.252 32.974 8.644 -0.939 0.271 H16 PZ7 71 PZ7 H17 H17 H 0 1 N N N -4.453 9.226 33.488 8.501 0.237 1.599 H17 PZ7 72 PZ7 H18 H18 H 0 1 N N N -5.319 8.183 28.699 6.535 -4.556 -0.556 H18 PZ7 73 PZ7 H19 H19 H 0 1 N N N -6.301 7.104 29.746 7.731 -5.349 0.496 H19 PZ7 74 PZ7 H20 H20 H 0 1 N N N -0.800 13.257 31.625 6.234 0.991 4.726 H20 PZ7 75 PZ7 H21 H21 H 0 1 N N N -9.356 15.032 34.817 -11.950 -1.450 4.586 H21 PZ7 76 PZ7 H22 H22 H 0 1 N N N -9.361 17.729 34.707 -13.332 0.425 3.386 H22 PZ7 77 PZ7 H23 H23 H 0 1 N N N -4.946 16.534 28.563 -7.474 0.472 -1.459 H23 PZ7 78 PZ7 H24 H24 H 0 1 N N N -6.283 14.330 27.419 -7.278 -2.793 -1.392 H24 PZ7 79 PZ7 H25 H25 H 0 1 N N N -4.172 15.304 27.011 -5.379 -2.922 -2.700 H25 PZ7 80 PZ7 H26 H26 H 0 1 N N N 4.033 9.423 30.184 4.096 5.564 -0.818 H26 PZ7 81 PZ7 H27 H27 H 0 1 N N N 2.092 8.952 31.185 5.477 4.028 0.304 H27 PZ7 82 PZ7 H28 H28 H 0 1 N N N 0.296 8.643 32.865 4.512 1.584 0.200 H28 PZ7 83 PZ7 H29 H29 H 0 1 N N N -2.090 9.259 32.451 5.774 -0.463 0.732 H29 PZ7 84 PZ7 H30 H30 H 0 1 N N N -5.604 8.374 31.650 8.634 -2.732 -0.064 H30 PZ7 85 PZ7 H31 H31 H 0 1 N N N -6.467 11.945 27.684 -6.614 -4.850 -0.376 H31 PZ7 86 PZ7 H32 H32 H 0 1 N N N -3.270 14.001 25.329 -4.880 -4.970 -1.528 H32 PZ7 87 PZ7 H33 H33 H 0 1 N N N 0.371 16.474 31.089 -3.536 2.218 -3.716 H33 PZ7 88 PZ7 H34 H34 H 0 1 N N N 4.078 16.120 29.043 -0.970 4.739 -2.989 H34 PZ7 89 PZ7 H35 H35 H 0 1 N N N 5.271 8.184 31.645 4.206 7.206 0.913 H35 PZ7 90 PZ7 H36 H36 H 0 1 N N N 2.232 7.724 33.201 6.038 6.097 1.430 H36 PZ7 91 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PZ7 O47 C46 SING N N 1 PZ7 C46 C44 SING N N 2 PZ7 C46 C29 SING N N 3 PZ7 O45 C44 SING N N 4 PZ7 C44 C31 SING N N 5 PZ7 O23 P22 DOUB N N 6 PZ7 C28 C29 SING N N 7 PZ7 C28 O27 SING N N 8 PZ7 C29 O30 SING N N 9 PZ7 F10 C08 SING N N 10 PZ7 O26 P25 DOUB N N 11 PZ7 C31 O30 SING N N 12 PZ7 C31 N32 SING N N 13 PZ7 O24 P22 SING N N 14 PZ7 O24 P25 SING N N 15 PZ7 O27 P25 SING N N 16 PZ7 P22 O49 SING N N 17 PZ7 P22 O21 SING N N 18 PZ7 C43 N32 SING Y N 19 PZ7 C43 N42 DOUB Y N 20 PZ7 P25 O48 SING N N 21 PZ7 O12 C05 DOUB N N 22 PZ7 C08 C07 SING N N 23 PZ7 C08 F09 SING N N 24 PZ7 C08 F11 SING N N 25 PZ7 C07 N06 SING N N 26 PZ7 N32 C33 SING Y N 27 PZ7 C20 O21 SING N N 28 PZ7 C20 C19 SING N N 29 PZ7 N42 C41 SING Y N 30 PZ7 C05 N06 SING N N 31 PZ7 C05 N03 SING N N 32 PZ7 C33 C41 DOUB Y N 33 PZ7 C33 N34 SING Y N 34 PZ7 C41 C40 SING Y N 35 PZ7 C50 C19 SING N N 36 PZ7 C50 O51 SING N N 37 PZ7 C50 C52 SING N N 38 PZ7 C19 O18 SING N N 39 PZ7 N34 C35 DOUB Y N 40 PZ7 C02 N03 SING N N 41 PZ7 C02 C13 SING N N 42 PZ7 C02 C01 SING N N 43 PZ7 N03 C04 SING N N 44 PZ7 C14 C13 DOUB Y N 45 PZ7 C14 C15 SING Y N 46 PZ7 C52 C17 SING N N 47 PZ7 C52 O53 SING N N 48 PZ7 C13 C55 SING Y N 49 PZ7 C15 N16 DOUB Y N 50 PZ7 C40 N39 DOUB Y N 51 PZ7 C40 N36 SING Y N 52 PZ7 C55 C54 DOUB Y N 53 PZ7 O18 C17 SING N N 54 PZ7 N16 C54 SING Y N 55 PZ7 N16 C17 SING N N 56 PZ7 C35 N36 SING Y N 57 PZ7 N39 C38 SING Y N 58 PZ7 N36 C37 SING Y N 59 PZ7 C38 C37 DOUB Y N 60 PZ7 C35 H1 SING N N 61 PZ7 C31 H2 SING N N 62 PZ7 C29 H3 SING N N 63 PZ7 C28 H4 SING N N 64 PZ7 C28 H5 SING N N 65 PZ7 C20 H6 SING N N 66 PZ7 C20 H7 SING N N 67 PZ7 C19 H8 SING N N 68 PZ7 C17 H9 SING N N 69 PZ7 C15 H10 SING N N 70 PZ7 C01 H11 SING N N 71 PZ7 C01 H12 SING N N 72 PZ7 C01 H13 SING N N 73 PZ7 C02 H14 SING N N 74 PZ7 C04 H15 SING N N 75 PZ7 C04 H16 SING N N 76 PZ7 C04 H17 SING N N 77 PZ7 C07 H18 SING N N 78 PZ7 C07 H19 SING N N 79 PZ7 C14 H20 SING N N 80 PZ7 C37 H21 SING N N 81 PZ7 C38 H22 SING N N 82 PZ7 C43 H23 SING N N 83 PZ7 C44 H24 SING N N 84 PZ7 C46 H25 SING N N 85 PZ7 C50 H26 SING N N 86 PZ7 C52 H27 SING N N 87 PZ7 C54 H28 SING N N 88 PZ7 C55 H29 SING N N 89 PZ7 N06 H30 SING N N 90 PZ7 O45 H31 SING N N 91 PZ7 O47 H32 SING N N 92 PZ7 O48 H33 SING N N 93 PZ7 O49 H34 SING N N 94 PZ7 O51 H35 SING N N 95 PZ7 O53 H36 SING N N 96 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PZ7 SMILES ACDLabs 12.01 "FC(F)(F)CNC(=O)N(C)C(C)c1cc[n+](cc1)C1OC(COP(=O)(O)OP(=O)(O)OCC2OC(n3cnc4c3ncn3ccnc43)C(O)C2O)C(O)C1O" PZ7 InChI InChI 1.03 "InChI=1S/C28H35F3N8O14P2/c1-14(36(2)27(44)33-11-28(29,30)31)15-3-6-37(7-4-15)25-21(42)19(40)16(51-25)9-49-54(45,46)53-55(47,48)50-10-17-20(41)22(43)26(52-17)39-13-34-18-23-32-5-8-38(23)12-35-24(18)39/h3-8,12-14,16-17,19-22,25-26,40-43H,9-11H2,1-2H3,(H2-,33,44,45,46,47,48)/p+1/t14-,16+,17+,19+,20+,21+,22+,25+,26+/m0/s1" PZ7 InChIKey InChI 1.03 HWZJNOWKRSQFHS-SCQTVLMASA-O PZ7 SMILES_CANONICAL CACTVS 3.385 "C[C@H](N(C)C(=O)NCC(F)(F)F)c1cc[n+](cc1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c6nccn6cnc45)[C@@H](O)[C@H]2O" PZ7 SMILES CACTVS 3.385 "C[CH](N(C)C(=O)NCC(F)(F)F)c1cc[n+](cc1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c6nccn6cnc45)[CH](O)[CH]2O" PZ7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cc[n+](cc1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncn6c5ncc6)O)O)O)O)N(C)C(=O)NCC(F)(F)F" PZ7 SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cc[n+](cc1)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncn6c5ncc6)O)O)O)O)N(C)C(=O)NCC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PZ7 "SYSTEMATIC NAME" ACDLabs 12.01 "1-[(2R,3R,4S,5R)-5-({[(S)-{[(R)-({(2R,3S,4R,5R)-3,4-dihydroxy-5-[(6S)-3H-imidazo[2,1-i]purin-3-yl]oxolan-2-yl}methoxy)(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-4-{(1S)-1-[N-methyl(2,2,2-trifluoroethyl)carbamamido]ethyl}pyridin-1-ium (non-preferred name)" PZ7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{R})-5-imidazo[2,1-f]purin-3-yl-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[(1~{S})-1-[methyl-[2,2,2-tris(fluoranyl)ethylcarbamoyl]amino]ethyl]pyridin-1-ium-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PZ7 "Create component" 2022-05-31 RCSB PZ7 "Initial release" 2022-09-21 RCSB #