data_PZC # _chem_comp.id PZC _chem_comp.name "(2S)-N-[(1R,2S,3S,4R,5S)-4-{[(2S,3R)-3-(acetylamino)-6-{[(2-hydroxyethyl)amino]methyl}-3,4-dihydro-2H-pyran-2-yl]oxy}-5-amino-2-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-3-hydroxycyclohexyl]-4-amino-2-hydroxybutanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H50 N6 O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms acetylated-plazomicin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-02-03 _chem_comp.pdbx_modified_date 2021-05-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 634.719 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PZC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6VOU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PZC C01 C1 C 0 1 N N N -50.100 12.678 -20.688 5.796 3.950 -0.255 C01 PZC 1 PZC C03 C2 C 0 1 N N R -51.578 11.267 -19.296 3.465 3.548 -0.770 C03 PZC 2 PZC C04 C3 C 0 1 N N R -51.632 9.798 -19.439 3.507 2.324 -1.689 C04 PZC 3 PZC C06 C4 C 0 1 N N R -51.713 9.105 -18.066 2.247 1.483 -1.464 C06 PZC 4 PZC C08 C5 C 0 1 N N N -53.163 11.064 -17.309 0.973 3.420 -0.848 C08 PZC 5 PZC C09 C6 C 0 1 N N R -52.824 11.770 -18.659 2.182 4.338 -1.048 C09 PZC 6 PZC C10 C7 C 0 1 N N N -52.697 13.311 -18.398 2.091 5.521 -0.082 C10 PZC 7 PZC C13 C8 C 0 1 N N S -50.056 8.140 -16.627 1.211 0.036 0.141 C13 PZC 8 PZC C14 C9 C 0 1 N N S -49.817 8.633 -15.165 -0.075 0.738 0.582 C14 PZC 9 PZC C16 C10 C 0 1 N N R -49.273 7.512 -14.243 -1.157 -0.308 0.857 C16 PZC 10 PZC C18 C11 C 0 1 N N S -49.952 8.207 -11.965 -3.324 0.501 0.227 C18 PZC 11 PZC C20 C12 C 0 1 N N N -50.926 5.926 -11.667 -5.008 -0.780 -0.862 C20 PZC 12 PZC C21 C13 C 0 1 N N N -49.533 5.620 -10.993 -5.751 0.275 -1.066 C21 PZC 13 PZC C22 C14 C 0 1 N N N -48.770 6.657 -10.462 -5.434 1.616 -0.463 C22 PZC 14 PZC C23 C15 C 0 1 N N R -49.409 8.085 -10.721 -4.449 1.434 0.697 C23 PZC 15 PZC C25 C16 C 0 1 N N N -48.296 9.792 -9.267 -5.788 1.623 2.724 C25 PZC 16 PZC C26 C17 C 0 1 N N N -47.298 10.927 -9.083 -6.499 1.009 3.902 C26 PZC 17 PZC C28 C18 C 0 1 N N N -51.737 4.718 -12.282 -5.408 -2.075 -1.521 C28 PZC 18 PZC C30 C19 C 0 1 N N N -52.420 4.163 -14.604 -4.739 -3.727 -3.160 C30 PZC 19 PZC C31 C20 C 0 1 N N N -53.002 2.778 -14.207 -3.648 -4.101 -4.166 C31 PZC 20 PZC C33 C21 C 0 1 N N S -48.004 6.898 -14.887 -0.686 -1.252 1.965 C33 PZC 21 PZC C35 C22 C 0 1 N N N -48.247 6.375 -16.326 0.601 -1.954 1.523 C35 PZC 22 PZC C36 C23 C 0 1 N N R -48.789 7.492 -17.227 1.683 -0.908 1.249 C36 PZC 23 PZC C38 C24 C 0 1 N N N -49.990 5.932 -19.020 3.780 -2.045 1.749 C38 PZC 24 PZC C40 C25 C 0 1 N N S -50.056 5.446 -20.504 5.046 -2.736 1.314 C40 PZC 25 PZC C42 C26 C 0 1 N N N -49.925 3.888 -20.665 4.695 -4.037 0.590 C42 PZC 26 PZC C43 C27 C 0 1 N N N -48.815 3.454 -21.644 5.972 -4.675 0.040 C43 PZC 27 PZC N02 N1 N 0 1 N N N -51.388 11.907 -20.643 4.633 4.401 -1.030 N02 PZC 28 PZC N24 N2 N 0 1 N N N -48.440 9.153 -10.568 -5.140 0.836 1.843 N24 PZC 29 PZC N29 N3 N 0 1 N N N -52.489 5.142 -13.481 -4.381 -2.466 -2.496 N29 PZC 30 PZC N34 N4 N 0 1 N N N -47.458 5.804 -14.108 -1.725 -2.256 2.229 N34 PZC 31 PZC N37 N5 N 0 1 N N N -48.969 6.949 -18.645 2.915 -1.580 0.826 N37 PZC 32 PZC N44 N6 N 0 1 N N N -47.876 2.521 -21.000 5.634 -5.924 -0.655 N44 PZC 33 PZC O05 O1 O 0 1 N N N -50.505 9.372 -20.084 4.663 1.540 -1.388 O05 PZC 34 PZC O07 O2 O 0 1 N N N -52.744 9.662 -17.127 1.090 2.286 -1.710 O07 PZC 35 PZC O11 O3 O 0 1 N N N -53.903 11.573 -19.580 2.200 4.820 -2.393 O11 PZC 36 PZC O12 O4 O 0 1 N N N -50.373 9.253 -17.439 2.223 1.013 -0.116 O12 PZC 37 PZC O15 O5 O 0 1 N N N -50.989 9.195 -14.643 -0.515 1.619 -0.452 O15 PZC 38 PZC O17 O6 O 0 1 N N N -48.881 8.038 -12.965 -2.359 0.347 1.270 O17 PZC 39 PZC O19 O7 O 0 1 N N N -51.105 7.175 -12.235 -3.898 -0.769 -0.091 O19 PZC 40 PZC O27 O8 O 0 1 N N N -48.959 9.411 -8.364 -5.800 2.826 2.569 O27 PZC 41 PZC O32 O9 O 0 1 N N N -51.949 1.876 -14.307 -2.430 -4.372 -3.469 O32 PZC 42 PZC O39 O10 O 0 1 N N N -50.737 5.498 -18.215 3.539 -1.907 2.930 O39 PZC 43 PZC O41 O11 O 0 1 N N N -48.995 6.070 -21.248 5.846 -3.030 2.461 O41 PZC 44 PZC H1 H1 H 0 1 N N N -49.981 13.137 -21.681 5.563 3.993 0.809 H1 PZC 45 PZC H2 H2 H 0 1 N N N -50.117 13.465 -19.920 6.043 2.925 -0.533 H2 PZC 46 PZC H3 H3 H 0 1 N N N -49.258 11.997 -20.496 6.647 4.599 -0.467 H3 PZC 47 PZC H4 H4 H 0 1 N N N -50.722 11.532 -18.658 3.475 3.224 0.271 H4 PZC 48 PZC H5 H5 H 0 1 N N N -52.531 9.528 -20.013 3.547 2.650 -2.729 H5 PZC 49 PZC H6 H6 H 0 1 N N N -51.919 8.037 -18.228 2.251 0.633 -2.146 H6 PZC 50 PZC H7 H7 H 0 1 N N N -52.691 11.651 -16.507 0.938 3.086 0.189 H7 PZC 51 PZC H8 H8 H 0 1 N N N -54.256 11.095 -17.191 0.060 3.964 -1.086 H8 PZC 52 PZC H9 H9 H 0 1 N N N -51.874 13.497 -17.692 2.954 6.172 -0.221 H9 PZC 53 PZC H10 H10 H 0 1 N N N -52.490 13.828 -19.347 1.177 6.082 -0.281 H10 PZC 54 PZC H11 H11 H 0 1 N N N -53.638 13.689 -17.972 2.075 5.153 0.943 H11 PZC 55 PZC H12 H12 H 0 1 N N N -50.874 7.404 -16.628 1.020 -0.536 -0.767 H12 PZC 56 PZC H13 H13 H 0 1 N N N -49.042 9.412 -15.215 0.117 1.310 1.490 H13 PZC 57 PZC H14 H14 H 0 1 N N N -50.039 6.730 -14.129 -1.349 -0.880 -0.051 H14 PZC 58 PZC H15 H15 H 0 1 N N N -50.382 9.212 -12.087 -2.845 0.920 -0.658 H15 PZC 59 PZC H17 H17 H 0 1 N N N -49.170 4.604 -10.943 -6.627 0.181 -1.692 H17 PZC 60 PZC H19 H19 H 0 1 N N N -48.677 6.505 -9.376 -4.986 2.259 -1.221 H19 PZC 61 PZC H20 H20 H 0 1 N N N -47.771 6.630 -10.923 -6.351 2.075 -0.093 H20 PZC 62 PZC H21 H21 H 0 1 N N N -50.194 8.221 -9.963 -4.032 2.399 0.982 H21 PZC 63 PZC H22 H22 H 0 1 N N N -47.327 11.276 -8.040 -7.528 0.780 3.627 H22 PZC 64 PZC H23 H23 H 0 1 N N N -46.286 10.568 -9.322 -5.989 0.092 4.196 H23 PZC 65 PZC H24 H24 H 0 1 N N N -47.560 11.758 -9.755 -6.493 1.711 4.736 H24 PZC 66 PZC H25 H25 H 0 1 N N N -52.444 4.339 -11.529 -5.505 -2.853 -0.764 H25 PZC 67 PZC H26 H26 H 0 1 N N N -51.035 3.918 -12.562 -6.362 -1.943 -2.032 H26 PZC 68 PZC H27 H27 H 0 1 N N N -51.368 4.035 -14.899 -5.688 -3.606 -3.682 H27 PZC 69 PZC H28 H28 H 0 1 N N N -52.994 4.558 -15.455 -4.831 -4.516 -2.414 H28 PZC 70 PZC H29 H29 H 0 1 N N N -53.385 2.806 -13.176 -3.954 -4.987 -4.721 H29 PZC 71 PZC H30 H30 H 0 1 N N N -53.814 2.494 -14.892 -3.493 -3.273 -4.859 H30 PZC 72 PZC H31 H31 H 0 1 N N N -47.249 7.695 -14.950 -0.494 -0.680 2.873 H31 PZC 73 PZC H32 H32 H 0 1 N N N -48.977 5.553 -16.292 0.937 -2.626 2.313 H32 PZC 74 PZC H33 H33 H 0 1 N N N -47.297 6.006 -16.741 0.409 -2.526 0.616 H33 PZC 75 PZC H34 H34 H 0 1 N N N -48.018 8.275 -17.273 1.875 -0.336 2.157 H34 PZC 76 PZC H35 H35 H 0 1 N N N -51.028 5.749 -20.919 5.603 -2.084 0.641 H35 PZC 77 PZC H36 H36 H 0 1 N N N -50.885 3.496 -21.033 4.217 -4.724 1.288 H36 PZC 78 PZC H37 H37 H 0 1 N N N -49.706 3.455 -19.678 4.013 -3.822 -0.232 H37 PZC 79 PZC H38 H38 H 0 1 N N N -48.263 4.345 -21.979 6.450 -3.989 -0.658 H38 PZC 80 PZC H39 H39 H 0 1 N N N -49.275 2.959 -22.512 6.654 -4.890 0.863 H39 PZC 81 PZC H40 H40 H 0 1 N N N -52.150 12.530 -20.821 4.423 5.369 -0.839 H40 PZC 82 PZC H42 H42 H 0 1 N N N -47.880 9.446 -11.343 -5.130 -0.126 1.967 H42 PZC 83 PZC H43 H43 H 0 1 N N N -52.115 6.014 -13.798 -3.474 -2.532 -2.059 H43 PZC 84 PZC H45 H45 H 0 1 N N N -47.290 6.112 -13.172 -1.437 -2.892 2.957 H45 PZC 85 PZC H46 H46 H 0 1 N N N -48.109 5.045 -14.097 -2.603 -1.815 2.460 H46 PZC 86 PZC H48 H48 H 0 1 N N N -48.366 7.297 -19.363 3.108 -1.690 -0.118 H48 PZC 87 PZC H49 H49 H 0 1 N N N -47.168 2.255 -21.654 6.462 -6.366 -1.028 H49 PZC 88 PZC H50 H50 H 0 1 N N N -47.451 2.967 -20.212 5.132 -6.553 -0.046 H50 PZC 89 PZC H52 H52 H 0 1 N N N -50.532 8.427 -20.180 4.754 0.747 -1.934 H52 PZC 90 PZC H53 H53 H 0 1 N N N -54.712 11.888 -19.193 1.416 5.330 -2.639 H53 PZC 91 PZC H54 H54 H 0 1 N N N -50.830 9.491 -13.754 -1.276 2.164 -0.207 H54 PZC 92 PZC H55 H55 H 0 1 N N N -52.253 1.007 -14.073 -1.693 -4.616 -4.045 H55 PZC 93 PZC H56 H56 H 0 1 N N N -49.059 7.014 -21.161 5.413 -3.607 3.105 H56 PZC 94 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PZC C43 N44 SING N N 1 PZC C43 C42 SING N N 2 PZC O41 C40 SING N N 3 PZC C01 N02 SING N N 4 PZC C42 C40 SING N N 5 PZC N02 C03 SING N N 6 PZC C40 C38 SING N N 7 PZC O05 C04 SING N N 8 PZC O11 C09 SING N N 9 PZC C04 C03 SING N N 10 PZC C04 C06 SING N N 11 PZC C03 C09 SING N N 12 PZC C38 N37 SING N N 13 PZC C38 O39 DOUB N N 14 PZC C09 C10 SING N N 15 PZC C09 C08 SING N N 16 PZC N37 C36 SING N N 17 PZC C06 O12 SING N N 18 PZC C06 O07 SING N N 19 PZC O12 C13 SING N N 20 PZC C08 O07 SING N N 21 PZC C36 C13 SING N N 22 PZC C36 C35 SING N N 23 PZC C13 C14 SING N N 24 PZC C35 C33 SING N N 25 PZC C14 O15 SING N N 26 PZC C14 C16 SING N N 27 PZC C33 C16 SING N N 28 PZC C33 N34 SING N N 29 PZC C30 C31 SING N N 30 PZC C30 N29 SING N N 31 PZC O32 C31 SING N N 32 PZC C16 O17 SING N N 33 PZC N29 C28 SING N N 34 PZC O17 C18 SING N N 35 PZC C28 C20 SING N N 36 PZC O19 C18 SING N N 37 PZC O19 C20 SING N N 38 PZC C18 C23 SING N N 39 PZC C20 C21 DOUB N N 40 PZC C21 C22 SING N N 41 PZC C23 N24 SING N N 42 PZC C23 C22 SING N N 43 PZC N24 C25 SING N N 44 PZC C25 C26 SING N N 45 PZC C25 O27 DOUB N N 46 PZC C01 H1 SING N N 47 PZC C01 H2 SING N N 48 PZC C01 H3 SING N N 49 PZC C03 H4 SING N N 50 PZC C04 H5 SING N N 51 PZC C06 H6 SING N N 52 PZC C08 H7 SING N N 53 PZC C08 H8 SING N N 54 PZC C10 H9 SING N N 55 PZC C10 H10 SING N N 56 PZC C10 H11 SING N N 57 PZC C13 H12 SING N N 58 PZC C14 H13 SING N N 59 PZC C16 H14 SING N N 60 PZC C18 H15 SING N N 61 PZC C21 H17 SING N N 62 PZC C22 H19 SING N N 63 PZC C22 H20 SING N N 64 PZC C23 H21 SING N N 65 PZC C26 H22 SING N N 66 PZC C26 H23 SING N N 67 PZC C26 H24 SING N N 68 PZC C28 H25 SING N N 69 PZC C28 H26 SING N N 70 PZC C30 H27 SING N N 71 PZC C30 H28 SING N N 72 PZC C31 H29 SING N N 73 PZC C31 H30 SING N N 74 PZC C33 H31 SING N N 75 PZC C35 H32 SING N N 76 PZC C35 H33 SING N N 77 PZC C36 H34 SING N N 78 PZC C40 H35 SING N N 79 PZC C42 H36 SING N N 80 PZC C42 H37 SING N N 81 PZC C43 H38 SING N N 82 PZC C43 H39 SING N N 83 PZC N02 H40 SING N N 84 PZC N24 H42 SING N N 85 PZC N29 H43 SING N N 86 PZC N34 H45 SING N N 87 PZC N34 H46 SING N N 88 PZC N37 H48 SING N N 89 PZC N44 H49 SING N N 90 PZC N44 H50 SING N N 91 PZC O05 H52 SING N N 92 PZC O11 H53 SING N N 93 PZC O15 H54 SING N N 94 PZC O32 H55 SING N N 95 PZC O41 H56 SING N N 96 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PZC SMILES ACDLabs 12.01 "CNC1C(COC(C1O)OC3C(O)C(OC2C(CC=C(CNCCO)O2)NC(C)=O)C(N)CC3NC(=O)C(CCN)O)(C)O" PZC InChI InChI 1.03 "InChI=1S/C27H50N6O11/c1-13(35)32-16-5-4-14(11-31-8-9-34)42-25(16)43-21-15(29)10-17(33-24(39)18(36)6-7-28)22(19(21)37)44-26-20(38)23(30-3)27(2,40)12-41-26/h4,15-23,25-26,30-31,34,36-38,40H,5-12,28-29H2,1-3H3,(H,32,35)(H,33,39)/t15-,16+,17+,18-,19-,20+,21+,22-,23+,25+,26+,27-/m0/s1" PZC InChIKey InChI 1.03 PALSFHNAOHBRHX-ARRQPEMVSA-N PZC SMILES_CANONICAL CACTVS 3.385 "CN[C@@H]1[C@@H](O)[C@H](OC[C@]1(C)O)O[C@@H]2[C@@H](O)[C@H](O[C@H]3OC(=CC[C@H]3NC(C)=O)CNCCO)[C@@H](N)C[C@H]2NC(=O)[C@@H](O)CCN" PZC SMILES CACTVS 3.385 "CN[CH]1[CH](O)[CH](OC[C]1(C)O)O[CH]2[CH](O)[CH](O[CH]3OC(=CC[CH]3NC(C)=O)CNCCO)[CH](N)C[CH]2NC(=O)[CH](O)CCN" PZC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1CC=C(O[C@@H]1O[C@@H]2[C@H](C[C@H]([C@@H]([C@H]2O)O[C@@H]3[C@@H]([C@H]([C@@](CO3)(C)O)NC)O)NC(=O)[C@H](CCN)O)N)CNCCO" PZC SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1CC=C(OC1OC2C(CC(C(C2O)OC3C(C(C(CO3)(C)O)NC)O)NC(=O)C(CCN)O)N)CNCCO" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PZC "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-N-[(1R,2S,3S,4R,5S)-4-{[(2S,3R)-3-(acetylamino)-6-{[(2-hydroxyethyl)amino]methyl}-3,4-dihydro-2H-pyran-2-yl]oxy}-5-amino-2-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-3-hydroxycyclohexyl]-4-amino-2-hydroxybutanamide" PZC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-~{N}-[(1~{R},2~{S},3~{S},4~{R},5~{S})-4-[[(2~{S},3~{R})-3-acetamido-6-[(2-hydroxyethylamino)methyl]-3,4-dihydro-2~{H}-pyran-2-yl]oxy]-5-azanyl-2-[(2~{R},3~{R},4~{R},5~{R})-5-methyl-4-(methylamino)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id PZC _pdbx_chem_comp_synonyms.name acetylated-plazomicin _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PZC "Create component" 2020-02-03 RCSB PZC "Modify formula" 2020-02-05 RCSB PZC "Modify synonyms" 2021-03-01 PDBE PZC "Initial release" 2021-06-02 RCSB ##