data_PZG # _chem_comp.id PZG _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid" _chem_comp.type "DNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C14 H18 N7 O7 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-01-05 _chem_comp.pdbx_modified_date 2016-12-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 427.309 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PZG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5HBW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PZG O1 O6 O 0 1 N N N 10.938 -8.816 5.799 6.147 2.711 1.181 O1 PZG 1 PZG C1 C6 C 0 1 N N N 11.175 -8.855 4.617 5.643 1.852 0.479 C1 PZG 2 PZG N1 N1 N 0 1 N N N 12.473 -8.544 4.284 6.335 1.298 -0.542 N1 PZG 3 PZG C2 C2 C 0 1 N N N 12.876 -8.661 2.966 5.761 0.337 -1.320 C2 PZG 4 PZG N2 N2 N 0 1 N N N 14.109 -8.333 2.700 6.487 -0.207 -2.350 N2 PZG 5 PZG N3 N3 N 0 1 N N N 12.050 -9.085 2.007 4.534 -0.083 -1.113 N3 PZG 6 PZG C3 C4 C 0 1 Y N N 10.761 -9.354 2.347 3.789 0.418 -0.121 C3 PZG 7 PZG C4 C5 C 0 1 Y N N 10.308 -9.280 3.648 4.323 1.404 0.717 C4 PZG 8 PZG N4 N7 N 0 1 Y N N 9.041 -9.682 3.655 3.365 1.725 1.621 N4 PZG 9 PZG C5 C8 C 0 1 Y N N 8.698 -9.956 2.412 2.302 1.012 1.393 C5 PZG 10 PZG N5 N9 N 0 1 Y N N 9.757 -9.738 1.604 2.517 0.186 0.329 N5 PZG 11 PZG C6 C1* C 0 1 N N R 9.782 -9.948 0.152 1.561 -0.772 -0.232 C6 PZG 12 PZG O2 O4* O 0 1 N N N 8.518 -10.640 -0.079 0.211 -0.404 0.125 O2 PZG 13 PZG C7 C2* C 0 1 N N R 10.838 -10.941 -0.308 1.770 -2.169 0.394 C7 PZG 14 PZG O3 O2* O 0 1 N N N 11.856 -10.254 -1.053 2.555 -2.993 -0.470 O3 PZG 15 PZG C8 C3* C 0 1 N N S 10.128 -11.757 -1.316 0.340 -2.736 0.535 C8 PZG 16 PZG O4 O3* O 0 1 N N N 10.376 -11.121 -2.548 0.194 -3.928 -0.239 O4 PZG 17 PZG C9 C4* C 0 1 N N R 8.673 -11.553 -1.175 -0.565 -1.612 -0.025 C9 PZG 18 PZG C10 C5* C 0 1 N N N 7.993 -12.920 -1.100 -1.860 -1.518 0.786 C10 PZG 19 PZG O5 O5* O 0 1 N N N 8.340 -13.561 0.104 -2.729 -0.557 0.184 O5 PZG 20 PZG P1 P6* P 0 1 N N N 8.153 -15.177 0.482 -4.184 -0.200 0.774 P1 PZG 21 PZG O6 O7* O 0 1 N N N 7.622 -16.167 -0.672 -4.055 0.206 2.192 O6 PZG 22 PZG O7 O8* O 0 1 N Y N 7.222 -14.937 1.693 -5.137 -1.493 0.670 O7 PZG 23 PZG C11 C10 C 0 1 Y N N 10.030 -15.659 0.530 -4.907 1.162 -0.181 C11 PZG 24 PZG C12 C11 C 0 1 Y N N 10.819 -15.457 -0.537 -4.764 2.482 0.081 C12 PZG 25 PZG N6 N12 N 0 1 Y N N 12.042 -15.864 -0.199 -5.453 3.165 -0.858 N6 PZG 26 PZG N7 N13 N 0 1 Y N N 12.024 -16.346 1.079 -6.038 2.234 -1.725 N7 PZG 27 PZG C13 C14 C 0 1 Y N N 10.767 -16.213 1.528 -5.705 1.034 -1.323 C13 PZG 28 PZG C14 C15 C 0 1 N N N 10.260 -16.633 2.943 -6.115 -0.262 -1.974 C14 PZG 29 PZG H1 H1 H 0 1 N N N 13.117 -8.237 4.985 7.243 1.587 -0.722 H1 PZG 30 PZG H2 H2 H 0 1 N N N 14.452 -8.397 1.763 7.395 0.094 -2.515 H2 PZG 31 PZG H3 H3 H 0 1 N N N 14.712 -8.018 3.433 6.093 -0.891 -2.913 H3 PZG 32 PZG H4 H4 H 0 1 N N N 7.726 -10.300 2.092 1.386 1.063 1.964 H4 PZG 33 PZG H5 H5 H 0 1 N N N 9.850 -9.002 -0.405 1.667 -0.823 -1.316 H5 PZG 34 PZG H6 H6 H 0 1 N N N 11.233 -11.541 0.525 2.245 -2.082 1.372 H6 PZG 35 PZG H7 H7 H 0 1 N N N 12.361 -9.703 -0.467 2.717 -3.882 -0.126 H7 PZG 36 PZG H8 H8 H 0 1 N N N 10.418 -12.818 -1.290 0.107 -2.928 1.582 H8 PZG 37 PZG H9 H9 H 0 1 N N N 11.301 -11.184 -2.757 0.740 -4.665 0.068 H9 PZG 38 PZG H10 H10 H 0 1 N N N 8.312 -11.060 -2.090 -0.789 -1.793 -1.076 H10 PZG 39 PZG H11 H11 H 0 1 N N N 6.902 -12.788 -1.142 -2.350 -2.491 0.802 H11 PZG 40 PZG H12 H12 H 0 1 N N N 8.320 -13.537 -1.950 -1.628 -1.210 1.805 H12 PZG 41 PZG H13 H13 H 0 1 N Y N 6.421 -15.435 1.581 -5.267 -1.815 -0.232 H13 PZG 42 PZG H14 H14 H 0 1 N N N 10.520 -15.043 -1.489 -4.200 2.912 0.896 H14 PZG 43 PZG H15 H15 H 0 1 N N N 12.848 -15.823 -0.789 -5.529 4.130 -0.920 H15 PZG 44 PZG H16 H16 H 0 1 N N N 11.094 -17.057 3.521 -7.054 -0.605 -1.539 H16 PZG 45 PZG H17 H17 H 0 1 N N N 9.863 -15.751 3.467 -6.245 -0.105 -3.044 H17 PZG 46 PZG H18 H18 H 0 1 N N N 9.465 -17.386 2.839 -5.341 -1.012 -1.808 H18 PZG 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PZG O4 C8 SING N N 1 PZG C8 C9 SING N N 2 PZG C8 C7 SING N N 3 PZG C9 C10 SING N N 4 PZG C9 O2 SING N N 5 PZG C10 O5 SING N N 6 PZG O3 C7 SING N N 7 PZG O6 P1 DOUB N N 8 PZG C12 N6 SING Y N 9 PZG C12 C11 DOUB Y N 10 PZG C7 C6 SING N N 11 PZG N6 N7 SING Y N 12 PZG O2 C6 SING N N 13 PZG O5 P1 SING N N 14 PZG C6 N5 SING N N 15 PZG P1 C11 SING N N 16 PZG P1 O7 SING N N 17 PZG C11 C13 SING Y N 18 PZG N7 C13 DOUB Y N 19 PZG C13 C14 SING N N 20 PZG N5 C3 SING Y N 21 PZG N5 C5 SING Y N 22 PZG N3 C3 SING N N 23 PZG N3 C2 DOUB N N 24 PZG C3 C4 DOUB Y N 25 PZG C5 N4 DOUB Y N 26 PZG N2 C2 SING N N 27 PZG C2 N1 SING N N 28 PZG C4 N4 SING Y N 29 PZG C4 C1 SING N N 30 PZG N1 C1 SING N N 31 PZG C1 O1 DOUB N N 32 PZG N1 H1 SING N N 33 PZG N2 H2 SING N N 34 PZG N2 H3 SING N N 35 PZG C5 H4 SING N N 36 PZG C6 H5 SING N N 37 PZG C7 H6 SING N N 38 PZG O3 H7 SING N N 39 PZG C8 H8 SING N N 40 PZG O4 H9 SING N N 41 PZG C9 H10 SING N N 42 PZG C10 H11 SING N N 43 PZG C10 H12 SING N N 44 PZG O7 H13 SING N N 45 PZG C12 H14 SING N N 46 PZG N6 H15 SING N N 47 PZG C14 H16 SING N N 48 PZG C14 H17 SING N N 49 PZG C14 H18 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PZG InChI InChI 1.03 "InChI=1S/C14H18N7O7P/c1-5-7(2-17-20-5)29(25,26)27-3-6-9(22)10(23)13(28-6)21-4-16-8-11(21)18-14(15)19-12(8)24/h2,4,6,9-10,13,22-23H,3H2,1H3,(H,17,20)(H,25,26)(H3,15,18,19,24)/t6-,9-,10-,13-/m1/s1" PZG InChIKey InChI 1.03 KSGRBDIXLOOOHG-ZRFIDHNTSA-N PZG SMILES_CANONICAL CACTVS 3.385 "Cc1n[nH]cc1[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4C(=O)NC(=Nc34)N" PZG SMILES CACTVS 3.385 "Cc1n[nH]cc1[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4C(=O)NC(=Nc34)N" PZG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "Cc1c(c[nH]n1)P(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3N=C(NC4=O)N)O)O" PZG SMILES "OpenEye OEToolkits" 2.0.4 "Cc1c(c[nH]n1)P(=O)(O)OCC2C(C(C(O2)n3cnc4c3N=C(NC4=O)N)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PZG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PZG "Create component" 2016-01-05 RCSB PZG "Initial release" 2016-12-07 RCSB #