data_Q0U # _chem_comp.id Q0U _chem_comp.name "[[(3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[[methyl-[2,2,2-tris(fluoranyl)ethylcarbamoyl]amino]methyl]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H34 F3 N8 O14 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-05-31 _chem_comp.pdbx_modified_date 2022-09-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 789.525 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Q0U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8D0F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Q0U C14 C1 C 0 1 N N N -10.469 6.829 27.436 -4.321 1.282 -2.441 C14 Q0U 1 Q0U C15 C2 C 0 1 N N R -11.107 7.594 28.490 -4.788 -0.062 -1.880 C15 Q0U 2 Q0U C17 C3 C 0 1 N N R -13.160 8.771 27.941 -6.044 -1.052 -0.232 C17 Q0U 3 Q0U C19 C4 C 0 1 Y N N -14.087 7.831 25.799 -7.202 0.440 1.441 C19 Q0U 4 Q0U C02 C5 C 0 1 N N R -5.198 12.938 24.538 5.583 3.887 1.746 C02 Q0U 5 Q0U C03 C6 C 0 1 N N S -4.142 12.526 25.129 4.427 4.906 1.606 C03 Q0U 6 Q0U C05 C7 C 0 1 N N R -4.200 10.949 25.052 3.192 4.036 1.302 C05 Q0U 7 Q0U C06 C8 C 0 1 N N N -4.760 10.361 26.186 2.577 4.455 -0.036 C06 Q0U 8 Q0U C21 C9 C 0 1 Y N N -15.229 9.564 25.111 -8.220 -1.008 2.694 C21 Q0U 9 Q0U C22 C10 C 0 1 Y N N -14.624 9.888 26.308 -7.526 -1.725 1.706 C22 Q0U 10 Q0U C24 C11 C 0 1 Y N N -15.551 12.036 26.246 -8.310 -3.690 2.605 C24 Q0U 11 Q0U C26 C12 C 0 1 Y N N -16.028 10.572 24.494 -8.967 -1.733 3.639 C26 Q0U 12 Q0U C28 C13 C 0 1 N N R -13.410 7.370 28.708 -6.906 -1.206 -1.505 C28 Q0U 13 Q0U C30 C14 C 0 1 N N S -11.997 6.817 29.099 -6.061 -0.540 -2.614 C30 Q0U 14 Q0U C35 C15 C 0 1 N N R -5.773 11.700 23.613 4.822 2.571 2.049 C35 Q0U 15 Q0U C37 C16 C 0 1 Y N N -8.031 12.421 23.967 6.291 0.748 2.581 C37 Q0U 16 Q0U C38 C17 C 0 1 Y N N -9.392 12.166 24.239 7.058 -0.353 2.248 C38 Q0U 17 Q0U C39 C18 C 0 1 Y N N -7.487 10.159 24.152 5.657 1.051 0.387 C39 Q0U 18 Q0U C40 C19 C 0 1 Y N N -8.833 9.824 24.441 6.401 -0.040 -0.020 C40 Q0U 19 Q0U C41 C20 C 0 1 Y N N -9.790 10.842 24.483 7.118 -0.759 0.924 C41 Q0U 20 Q0U C42 C21 C 0 1 N N N -11.245 10.507 24.798 7.942 -1.954 0.520 C42 Q0U 21 Q0U C44 C22 C 0 1 N N N -12.083 12.692 25.921 6.417 -3.565 -0.487 C44 Q0U 22 Q0U C46 C23 C 0 1 N N N -12.836 14.765 27.079 4.897 -5.115 -1.593 C46 Q0U 23 Q0U C47 C24 C 0 1 N N N -11.846 15.953 26.878 4.127 -6.393 -1.253 C47 Q0U 24 Q0U C52 C25 C 0 1 N N N -12.743 12.175 23.481 7.055 -3.934 1.836 C52 Q0U 25 Q0U F48 F1 F 0 1 N N N -10.573 15.461 26.758 3.249 -6.141 -0.194 F48 Q0U 26 Q0U F49 F2 F 0 1 N N N -11.948 16.816 27.942 3.400 -6.811 -2.373 F49 Q0U 27 Q0U F50 F3 F 0 1 N N N -12.140 16.626 25.725 5.029 -7.396 -0.883 F50 Q0U 28 Q0U N18 N1 N 0 1 Y N N -13.917 8.820 26.718 -6.894 -0.786 0.931 N18 Q0U 29 Q0U N20 N2 N 0 1 Y N N -14.874 8.278 24.810 -7.981 0.307 2.476 N20 Q0U 30 Q0U N23 N3 N 0 1 Y N N -14.787 11.129 26.868 -7.599 -3.053 1.700 N23 Q0U 31 Q0U N25 N4 N 0 1 Y N N -16.156 11.779 25.098 -8.980 -3.059 3.553 N25 Q0U 32 Q0U N27 N5 N 0 1 N N N -16.723 10.314 23.210 -9.671 -1.081 4.636 N27 Q0U 33 Q0U N36 N6 N 1 1 Y N N -7.136 11.418 23.932 5.623 1.409 1.656 N36 Q0U 34 Q0U N43 N7 N 0 1 N N N -12.049 11.809 24.718 7.118 -3.163 0.592 N43 Q0U 35 Q0U N45 N8 N 0 1 N N N -12.811 13.931 25.870 5.659 -4.678 -0.421 N45 Q0U 36 Q0U O01 O1 O 0 1 N N N -5.027 14.078 23.622 6.445 4.238 2.830 O01 Q0U 37 Q0U O04 O2 O 0 1 N N N -2.866 12.930 24.453 4.244 5.626 2.826 O04 Q0U 38 Q0U O07 O3 O 0 1 N N N -4.729 8.999 25.919 1.368 3.724 -0.253 O07 Q0U 39 Q0U O09 O4 O 0 1 N N N -4.884 6.530 26.537 0.096 5.339 -1.717 O09 Q0U 40 Q0U O10 O5 O 0 1 N N N -6.781 8.186 27.256 -0.886 3.034 -1.417 O10 Q0U 41 Q0U O12 O6 O 0 1 N N N -7.784 6.166 28.436 -2.066 3.078 -3.648 O12 Q0U 42 Q0U O13 O7 O 0 1 N N N -9.380 7.673 26.988 -3.082 1.649 -1.832 O13 Q0U 43 Q0U O16 O8 O 0 1 N N N -11.871 8.908 27.758 -5.189 0.081 -0.500 O16 Q0U 44 Q0U O29 O9 O 0 1 N N N -14.085 7.571 29.802 -7.120 -2.587 -1.800 O29 Q0U 45 Q0U O31 O10 O 0 1 N N N -11.815 6.889 30.540 -5.727 -1.489 -3.628 O31 Q0U 46 Q0U O32 O11 O 0 1 N N N -7.606 6.168 25.977 -3.183 4.274 -1.727 O32 Q0U 47 Q0U O33 O12 O 0 1 N N N -4.508 8.227 28.351 1.274 3.424 -2.864 O33 Q0U 48 Q0U O34 O13 O 0 1 N N N -5.039 10.645 23.815 3.637 2.672 1.230 O34 Q0U 49 Q0U O51 O14 O 0 1 N N N -11.486 12.365 26.923 6.469 -2.925 -1.519 O51 Q0U 50 Q0U P08 P1 P 0 1 N N N -5.180 7.919 27.047 0.455 3.912 -1.566 P08 Q0U 51 Q0U P11 P2 P 0 1 N N N -7.887 6.989 27.152 -2.299 3.010 -2.188 P11 Q0U 52 Q0U H1 H1 H 0 1 N N N -10.087 5.874 27.825 -4.185 1.198 -3.520 H1 Q0U 53 Q0U H2 H2 H 0 1 N N N -11.174 6.634 26.615 -5.071 2.045 -2.228 H2 Q0U 54 Q0U H3 H3 H 0 1 N N N -10.354 7.994 29.185 -3.996 -0.806 -1.971 H3 Q0U 55 Q0U H5 H5 H 0 1 N N N -13.534 9.559 28.611 -5.446 -1.949 -0.068 H5 Q0U 56 Q0U H6 H6 H 0 1 N N N -13.656 6.842 25.857 -6.849 1.381 1.048 H6 Q0U 57 Q0U H7 H7 H 0 1 N N N -5.992 13.184 25.258 6.145 3.805 0.815 H7 Q0U 58 Q0U H8 H8 H 0 1 N N N -4.102 12.820 26.188 4.622 5.593 0.782 H8 Q0U 59 Q0U H9 H9 H 0 1 N N N -3.178 10.577 24.887 2.456 4.147 2.098 H9 Q0U 60 Q0U H10 H10 H 0 1 N N N -4.165 10.596 27.081 2.358 5.522 -0.017 H10 Q0U 61 Q0U H11 H11 H 0 1 N N N -5.794 10.706 26.333 3.280 4.242 -0.841 H11 Q0U 62 Q0U H12 H12 H 0 1 N N N -15.677 13.009 26.696 -8.349 -4.768 2.572 H12 Q0U 63 Q0U H13 H13 H 0 1 N N N -13.897 6.669 28.014 -7.857 -0.687 -1.386 H13 Q0U 64 Q0U H14 H14 H 0 1 N N N -11.927 5.772 28.764 -6.594 0.308 -3.043 H14 Q0U 65 Q0U H15 H15 H 0 1 N N N -5.708 12.034 22.567 4.558 2.515 3.105 H15 Q0U 66 Q0U H16 H16 H 0 1 N N N -7.704 13.434 23.785 6.236 1.068 3.611 H16 Q0U 67 Q0U H17 H17 H 0 1 N N N -10.111 12.971 24.259 7.603 -0.890 3.010 H17 Q0U 68 Q0U H18 H18 H 0 1 N N N -6.739 9.381 24.111 5.096 1.617 -0.342 H18 Q0U 69 Q0U H19 H19 H 0 1 N N N -9.115 8.798 24.626 6.425 -0.328 -1.061 H19 Q0U 70 Q0U H20 H20 H 0 1 N N N -11.630 9.783 24.065 8.302 -1.819 -0.500 H20 Q0U 71 Q0U H21 H21 H 0 1 N N N -11.321 10.081 25.809 8.792 -2.054 1.195 H21 Q0U 72 Q0U H22 H22 H 0 1 N N N -12.527 14.167 27.949 5.581 -5.312 -2.418 H22 Q0U 73 Q0U H23 H23 H 0 1 N N N -13.853 15.152 27.242 4.194 -4.334 -1.882 H23 Q0U 74 Q0U H24 H24 H 0 1 N N N -13.260 13.136 23.620 6.239 -3.561 2.454 H24 Q0U 75 Q0U H25 H25 H 0 1 N N N -12.012 12.267 22.664 6.884 -4.985 1.603 H25 Q0U 76 Q0U H26 H26 H 0 1 N N N -13.478 11.397 23.229 7.997 -3.830 2.376 H26 Q0U 77 Q0U H27 H27 H 0 1 N N N -17.235 11.129 22.938 -9.653 -0.113 4.689 H27 Q0U 78 Q0U H28 H28 H 0 1 N N N -16.049 10.093 22.505 -10.182 -1.593 5.282 H28 Q0U 79 Q0U H29 H29 H 0 1 N N N -13.286 14.216 25.037 5.617 -5.188 0.403 H29 Q0U 80 Q0U H30 H30 H 0 1 N N N -5.866 14.304 23.237 6.875 5.098 2.728 H30 Q0U 81 Q0U H31 H31 H 0 1 N N N -2.126 12.592 24.944 5.014 6.145 3.096 H31 Q0U 82 Q0U H33 H33 H 0 1 N N N -14.226 6.742 30.244 -7.656 -2.742 -2.590 H33 Q0U 83 Q0U H34 H34 H 0 1 N N N -12.454 6.332 30.969 -6.490 -1.823 -4.120 H34 Q0U 84 Q0U H35 H35 H 0 1 N N N -7.414 5.279 26.250 -3.376 4.295 -0.779 H35 Q0U 85 Q0U H36 H36 H 0 1 N N N -4.002 7.474 28.633 1.543 2.496 -2.833 H36 Q0U 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Q0U C14 C15 SING N N 1 Q0U C14 O13 SING N N 2 Q0U C15 C30 SING N N 3 Q0U C17 C28 SING N N 4 Q0U C17 N18 SING N N 5 Q0U C17 O16 SING N N 6 Q0U C19 N18 SING Y N 7 Q0U C19 N20 DOUB Y N 8 Q0U C02 C03 SING N N 9 Q0U C02 C35 SING N N 10 Q0U C02 O01 SING N N 11 Q0U C03 C05 SING N N 12 Q0U C03 O04 SING N N 13 Q0U C05 C06 SING N N 14 Q0U C05 O34 SING N N 15 Q0U C06 O07 SING N N 16 Q0U C21 C22 DOUB Y N 17 Q0U C21 C26 SING Y N 18 Q0U C21 N20 SING Y N 19 Q0U C22 N18 SING Y N 20 Q0U C22 N23 SING Y N 21 Q0U C24 N23 DOUB Y N 22 Q0U C24 N25 SING Y N 23 Q0U C26 N25 DOUB Y N 24 Q0U C26 N27 SING N N 25 Q0U C28 C30 SING N N 26 Q0U C28 O29 SING N N 27 Q0U C30 O31 SING N N 28 Q0U C35 N36 SING N N 29 Q0U C35 O34 SING N N 30 Q0U C37 C38 DOUB Y N 31 Q0U C37 N36 SING Y N 32 Q0U C38 C41 SING Y N 33 Q0U C39 C40 SING Y N 34 Q0U C39 N36 DOUB Y N 35 Q0U C40 C41 DOUB Y N 36 Q0U C41 C42 SING N N 37 Q0U C42 N43 SING N N 38 Q0U C44 N43 SING N N 39 Q0U C44 N45 SING N N 40 Q0U C44 O51 DOUB N N 41 Q0U C46 C47 SING N N 42 Q0U C46 N45 SING N N 43 Q0U C47 F48 SING N N 44 Q0U C47 F49 SING N N 45 Q0U C47 F50 SING N N 46 Q0U C52 N43 SING N N 47 Q0U O07 P08 SING N N 48 Q0U O09 P08 DOUB N N 49 Q0U O10 P08 SING N N 50 Q0U O10 P11 SING N N 51 Q0U O12 P11 DOUB N N 52 Q0U O13 P11 SING N N 53 Q0U O32 P11 SING N N 54 Q0U O33 P08 SING N N 55 Q0U C14 H1 SING N N 56 Q0U C14 H2 SING N N 57 Q0U C15 H3 SING N N 58 Q0U C17 H5 SING N N 59 Q0U C19 H6 SING N N 60 Q0U C02 H7 SING N N 61 Q0U C03 H8 SING N N 62 Q0U C05 H9 SING N N 63 Q0U C06 H10 SING N N 64 Q0U C06 H11 SING N N 65 Q0U C24 H12 SING N N 66 Q0U C28 H13 SING N N 67 Q0U C30 H14 SING N N 68 Q0U C35 H15 SING N N 69 Q0U C37 H16 SING N N 70 Q0U C38 H17 SING N N 71 Q0U C39 H18 SING N N 72 Q0U C40 H19 SING N N 73 Q0U C42 H20 SING N N 74 Q0U C42 H21 SING N N 75 Q0U C46 H22 SING N N 76 Q0U C46 H23 SING N N 77 Q0U C52 H24 SING N N 78 Q0U C52 H25 SING N N 79 Q0U C52 H26 SING N N 80 Q0U N27 H27 SING N N 81 Q0U N27 H28 SING N N 82 Q0U N45 H29 SING N N 83 Q0U O01 H30 SING N N 84 Q0U O04 H31 SING N N 85 Q0U O29 H33 SING N N 86 Q0U O31 H34 SING N N 87 Q0U O32 H35 SING N N 88 Q0U O33 H36 SING N N 89 Q0U C15 O16 SING N N 90 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Q0U SMILES ACDLabs 12.01 "FC(F)(F)CNC(=O)N(C)Cc1cc[n+](cc1)C1OC(COP(=O)(O)OP(=O)(O)OCC2OC(n3cnc4c(N)ncnc43)C(O)C2O)C(O)C1O" Q0U InChI InChI 1.03 "InChI=1S/C25H33F3N8O14P2/c1-34(24(41)30-9-25(26,27)28)6-12-2-4-35(5-3-12)22-18(39)16(37)13(48-22)7-46-51(42,43)50-52(44,45)47-8-14-17(38)19(40)23(49-14)36-11-33-15-20(29)31-10-32-21(15)36/h2-5,10-11,13-14,16-19,22-23,37-40H,6-9H2,1H3,(H4-,29,30,31,32,41,42,43,44,45)/p+1/t13-,14-,16-,17-,18-,19-,22-,23-/m1/s1" Q0U InChIKey InChI 1.03 APAAALLQLBDNPD-LWKDBSCFSA-O Q0U SMILES_CANONICAL CACTVS 3.385 "CN(Cc1cc[n+](cc1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O)C(=O)NCC(F)(F)F" Q0U SMILES CACTVS 3.385 "CN(Cc1cc[n+](cc1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O)C(=O)NCC(F)(F)F" Q0U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(Cc1cc[n+](cc1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)NCC(F)(F)F" Q0U SMILES "OpenEye OEToolkits" 2.0.7 "CN(Cc1cc[n+](cc1)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)NCC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Q0U "SYSTEMATIC NAME" ACDLabs 12.01 "1-[(2R,3R,4S,5R)-5-({[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-4-{[N-methyl(2,2,2-trifluoroethyl)carbamamido]methyl}pyridin-1-ium (non-preferred name)" Q0U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[[methyl-[2,2,2-tris(fluoranyl)ethylcarbamoyl]amino]methyl]pyridin-1-ium-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Q0U "Create component" 2022-05-31 RCSB Q0U "Initial release" 2022-09-21 RCSB #