data_Q3M # _chem_comp.id Q3M _chem_comp.name "Methyl 2-(acetylamino)-2-deoxy-1-thio-alpha-D-galactopyranose" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H19 N O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N-[(1R,2R,3S,4R,6S)-2,3-dihydroxy-4-(hydroxymethyl)-6-(methylsulfanyl)cyclohexyl]acetamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-09-16 _chem_comp.pdbx_modified_date 2021-03-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 249.327 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Q3M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6U70 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Q3M C01 C1 C 0 1 N N N -14.051 -12.779 5.714 1.006 -3.743 -0.026 C01 Q3M 1 Q3M S02 S1 S 0 1 N N N -13.686 -11.118 4.998 -0.417 -2.645 0.219 S02 Q3M 2 Q3M C03 C2 C 0 1 N N S -15.216 -10.079 4.995 0.345 -1.002 0.308 C03 Q3M 3 Q3M C04 C3 C 0 1 N N N -15.930 -10.185 6.324 0.986 -0.663 -1.039 C04 Q3M 4 Q3M C05 C4 C 0 1 N N R -15.063 -9.572 7.423 1.630 0.723 -0.964 C05 Q3M 5 Q3M C06 C5 C 0 1 N N N -15.799 -9.738 8.771 2.703 0.729 0.127 C06 Q3M 6 Q3M O07 O1 O 0 1 N N N -15.873 -11.126 9.000 3.782 -0.123 -0.262 O07 Q3M 7 Q3M C08 C6 C 0 1 N N S -14.738 -8.093 7.199 0.559 1.765 -0.632 C08 Q3M 8 Q3M O09 O2 O 0 1 N N N -15.902 -7.312 7.296 1.160 3.059 -0.561 O09 Q3M 9 Q3M C10 C7 C 0 1 N N R -14.083 -7.872 5.824 -0.082 1.426 0.716 C10 Q3M 10 Q3M O11 O3 O 0 1 N N N -13.986 -6.483 5.594 0.920 1.431 1.735 O11 Q3M 11 Q3M C12 C8 C 0 1 N N R -14.874 -8.579 4.711 -0.725 0.040 0.640 C12 Q3M 12 Q3M N13 N1 N 0 1 N N N -14.097 -8.572 3.492 -1.752 0.034 -0.404 N13 Q3M 13 Q3M C14 C9 C 0 1 N N N -14.737 -8.416 2.208 -3.001 0.457 -0.124 C14 Q3M 14 Q3M C15 C10 C 0 1 N N N -13.828 -8.412 0.985 -4.057 0.451 -1.198 C15 Q3M 15 Q3M O16 O4 O 0 1 N N N -15.922 -8.259 2.119 -3.274 0.841 0.994 O16 Q3M 16 Q3M H1 H1 H 0 1 N N N -13.136 -13.389 5.712 0.661 -4.775 -0.095 H1 Q3M 17 Q3M H2 H2 H 0 1 N N N -14.411 -12.662 6.747 1.522 -3.470 -0.946 H2 Q3M 18 Q3M H3 H3 H 0 1 N N N -14.825 -13.276 5.111 1.690 -3.644 0.817 H3 Q3M 19 Q3M H4 H4 H 0 1 N N N -15.855 -10.469 4.189 1.110 -0.998 1.085 H4 Q3M 20 Q3M H5 H5 H 0 1 N N N -16.887 -9.646 6.269 1.749 -1.405 -1.276 H5 Q3M 21 Q3M H6 H6 H 0 1 N N N -16.119 -11.244 6.555 0.222 -0.667 -1.816 H6 Q3M 22 Q3M H7 H7 H 0 1 N N N -14.118 -10.132 7.475 2.086 0.965 -1.923 H7 Q3M 23 Q3M H8 H8 H 0 1 N N N -15.236 -9.246 9.578 3.073 1.744 0.267 H8 Q3M 24 Q3M H9 H9 H 0 1 N N N -16.809 -9.305 8.712 2.273 0.367 1.061 H9 Q3M 25 Q3M H10 H10 H 0 1 N N N -16.320 -11.288 9.823 4.500 -0.168 0.384 H10 Q3M 26 Q3M H11 H11 H 0 1 N N N -14.018 -7.782 7.970 -0.205 1.761 -1.409 H11 Q3M 27 Q3M H12 H12 H 0 1 N N N -16.306 -7.449 8.145 0.539 3.771 -0.354 H12 Q3M 28 Q3M H13 H13 H 0 1 N N N -13.075 -8.312 5.855 -0.844 2.168 0.952 H13 Q3M 29 Q3M H14 H14 H 0 1 N N N -13.493 -6.079 6.298 1.371 2.280 1.839 H14 Q3M 30 Q3M H15 H15 H 0 1 N N N -15.817 -8.036 4.554 -1.181 -0.202 1.600 H15 Q3M 31 Q3M H16 H16 H 0 1 N N N -13.104 -8.677 3.539 -1.533 -0.273 -1.298 H16 Q3M 32 Q3M H17 H17 H 0 1 N N N -14.431 -8.249 0.080 -4.576 -0.507 -1.192 H17 Q3M 33 Q3M H18 H18 H 0 1 N N N -13.087 -7.605 1.082 -4.772 1.252 -1.009 H18 Q3M 34 Q3M H19 H19 H 0 1 N N N -13.309 -9.379 0.911 -3.588 0.605 -2.170 H19 Q3M 35 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Q3M C15 C14 SING N N 1 Q3M O16 C14 DOUB N N 2 Q3M C14 N13 SING N N 3 Q3M N13 C12 SING N N 4 Q3M C12 C03 SING N N 5 Q3M C12 C10 SING N N 6 Q3M C03 S02 SING N N 7 Q3M C03 C04 SING N N 8 Q3M S02 C01 SING N N 9 Q3M O11 C10 SING N N 10 Q3M C10 C08 SING N N 11 Q3M C04 C05 SING N N 12 Q3M C08 O09 SING N N 13 Q3M C08 C05 SING N N 14 Q3M C05 C06 SING N N 15 Q3M C06 O07 SING N N 16 Q3M C01 H1 SING N N 17 Q3M C01 H2 SING N N 18 Q3M C01 H3 SING N N 19 Q3M C03 H4 SING N N 20 Q3M C04 H5 SING N N 21 Q3M C04 H6 SING N N 22 Q3M C05 H7 SING N N 23 Q3M C06 H8 SING N N 24 Q3M C06 H9 SING N N 25 Q3M O07 H10 SING N N 26 Q3M C08 H11 SING N N 27 Q3M O09 H12 SING N N 28 Q3M C10 H13 SING N N 29 Q3M O11 H14 SING N N 30 Q3M C12 H15 SING N N 31 Q3M N13 H16 SING N N 32 Q3M C15 H17 SING N N 33 Q3M C15 H18 SING N N 34 Q3M C15 H19 SING N N 35 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Q3M SMILES ACDLabs 12.01 "CSC1CC(CO)C(O)C(O)C1NC(C)=O" Q3M InChI InChI 1.03 "InChI=1S/C10H19NO4S/c1-5(13)11-8-7(16-2)3-6(4-12)9(14)10(8)15/h6-10,12,14-15H,3-4H2,1-2H3,(H,11,13)/t6-,7+,8+,9+,10-/m1/s1" Q3M InChIKey InChI 1.03 ZYKRTEHWXBHGOU-SQQIUAQRSA-N Q3M SMILES_CANONICAL CACTVS 3.385 "CS[C@H]1C[C@H](CO)[C@H](O)[C@H](O)[C@H]1NC(C)=O" Q3M SMILES CACTVS 3.385 "CS[CH]1C[CH](CO)[CH](O)[CH](O)[CH]1NC(C)=O" Q3M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@H]1[C@H](C[C@@H]([C@@H]([C@@H]1O)O)CO)SC" Q3M SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(CC(C(C1O)O)CO)SC" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Q3M "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(1R,2R,3S,4R,6S)-2,3-dihydroxy-4-(hydroxymethyl)-6-(methylsulfanyl)cyclohexyl]acetamide" Q3M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{R},2~{R},3~{S},4~{R},6~{S})-4-(hydroxymethyl)-6-methylsulfanyl-2,3-bis(oxidanyl)cyclohexyl]ethanamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id Q3M _pdbx_chem_comp_synonyms.name "N-[(1R,2R,3S,4R,6S)-2,3-dihydroxy-4-(hydroxymethyl)-6-(methylsulfanyl)cyclohexyl]acetamide" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Q3M "Create component" 2019-09-16 RCSB Q3M "Modify synonyms" 2019-09-25 RCSB Q3M "Modify synonyms" 2020-06-05 PDBE Q3M "Modify linking type" 2020-07-23 RCSB Q3M "Initial release" 2021-03-31 RCSB ##