data_Q3V # _chem_comp.id Q3V _chem_comp.name "N-[(2E)-4-hydroxy-3-methylbut-2-en-1-yl]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H21 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-01 _chem_comp.pdbx_modified_date 2023-05-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 351.358 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Q3V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Q3V N1 N1 N 0 1 Y N N ? ? ? 1.919 -1.998 -0.275 N1 Q3V 1 Q3V C7 C1 C 0 1 Y N N ? ? ? -0.995 1.351 0.117 C7 Q3V 2 Q3V C8 C2 C 0 1 Y N N ? ? ? 0.681 -0.021 0.006 C8 Q3V 3 Q3V N2 N2 N 0 1 Y N N ? ? ? -0.378 -2.059 -0.525 N2 Q3V 4 Q3V C9 C3 C 0 1 N N R ? ? ? -2.941 -0.170 -0.400 C9 Q3V 5 Q3V O1 O1 O 0 1 N N N ? ? ? -5.803 3.009 -0.857 O1 Q3V 6 Q3V C1 C4 C 0 1 N N N ? ? ? 6.505 0.324 -0.268 C1 Q3V 7 Q3V C5 C5 C 0 1 Y N N ? ? ? 0.798 -2.650 -0.526 C5 Q3V 8 Q3V C6 C6 C 0 1 Y N N ? ? ? -0.483 -0.759 -0.267 C6 Q3V 9 Q3V N3 N3 N 0 1 Y N N ? ? ? -1.523 0.132 -0.190 N3 Q3V 10 Q3V C4 C7 C 0 1 Y N N ? ? ? 1.913 -0.697 -0.006 C4 Q3V 11 Q3V O4 O2 O 0 1 N N N ? ? ? 7.232 2.112 1.153 O4 Q3V 12 Q3V C3 C8 C 0 1 N N N ? ? ? 4.368 -0.744 0.238 C3 Q3V 13 Q3V O3 O3 O 0 1 N N N ? ? ? -3.402 -2.107 1.036 O3 Q3V 14 Q3V C2 C9 C 0 1 N N N ? ? ? 5.490 0.212 0.553 C2 Q3V 15 Q3V N4 N4 N 0 1 Y N N ? ? ? 0.299 1.259 0.231 N4 Q3V 16 Q3V C10 C10 C 0 1 N N R ? ? ? -5.062 0.760 -0.374 C10 Q3V 17 Q3V C11 C11 C 0 1 N N N ? ? ? -5.735 2.020 0.172 C11 Q3V 18 Q3V C12 C12 C 0 1 N N S ? ? ? -5.080 -0.350 0.695 C12 Q3V 19 Q3V C13 C13 C 0 1 N N R ? ? ? -3.586 -0.695 0.908 C13 Q3V 20 Q3V C14 C14 C 0 1 N N N ? ? ? 7.559 1.372 -0.025 C14 Q3V 21 Q3V C C15 C 0 1 N N N ? ? ? 6.617 -0.596 -1.457 C Q3V 22 Q3V N N5 N 0 1 N N N ? ? ? 3.093 -0.023 0.256 N Q3V 23 Q3V O2 O4 O 0 1 N N N ? ? ? -5.794 -1.492 0.218 O2 Q3V 24 Q3V O O5 O 0 1 N N N ? ? ? -3.685 1.035 -0.681 O Q3V 25 Q3V H1 H1 H 0 1 N N N ? ? ? -1.565 2.259 0.245 H1 Q3V 26 Q3V H2 H2 H 0 1 N N N ? ? ? -3.063 -0.894 -1.205 H2 Q3V 27 Q3V H3 H3 H 0 1 N N N ? ? ? -6.219 3.837 -0.581 H3 Q3V 28 Q3V H4 H4 H 0 1 N N N ? ? ? 0.848 -3.707 -0.740 H4 Q3V 29 Q3V H5 H5 H 0 1 N N N ? ? ? 7.869 2.806 1.372 H5 Q3V 30 Q3V H6 H6 H 0 1 N N N ? ? ? 4.527 -1.178 -0.749 H6 Q3V 31 Q3V H7 H7 H 0 1 N N N ? ? ? 4.347 -1.538 0.985 H7 Q3V 32 Q3V H8 H8 H 0 1 N N N ? ? ? -3.789 -2.482 1.839 H8 Q3V 33 Q3V H9 H9 H 0 1 N N N ? ? ? 5.458 0.804 1.455 H9 Q3V 34 Q3V H10 H10 H 0 1 N N N ? ? ? -5.580 0.419 -1.271 H10 Q3V 35 Q3V H11 H11 H 0 1 N N N ? ? ? -5.155 2.407 1.010 H11 Q3V 36 Q3V H12 H12 H 0 1 N N N ? ? ? -6.742 1.777 0.510 H12 Q3V 37 Q3V H13 H13 H 0 1 N N N ? ? ? -5.522 0.019 1.620 H13 Q3V 38 Q3V H14 H14 H 0 1 N N N ? ? ? -3.186 -0.172 1.777 H14 Q3V 39 Q3V H15 H15 H 0 1 N N N ? ? ? 8.528 0.890 0.106 H15 Q3V 40 Q3V H16 H16 H 0 1 N N N ? ? ? 7.602 2.049 -0.878 H16 Q3V 41 Q3V H17 H17 H 0 1 N N N ? ? ? 6.036 -0.191 -2.286 H17 Q3V 42 Q3V H18 H18 H 0 1 N N N ? ? ? 7.663 -0.681 -1.753 H18 Q3V 43 Q3V H19 H19 H 0 1 N N N ? ? ? 6.234 -1.581 -1.191 H19 Q3V 44 Q3V H20 H20 H 0 1 N N N ? ? ? 3.076 0.927 0.451 H20 Q3V 45 Q3V H21 H21 H 0 1 N N N ? ? ? -6.723 -1.317 0.012 H21 Q3V 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Q3V C11 O1 SING N N 1 Q3V C11 C10 SING N N 2 Q3V O4 C14 SING N N 3 Q3V C10 O SING N N 4 Q3V C10 C12 SING N N 5 Q3V O C9 SING N N 6 Q3V C7 N4 DOUB Y N 7 Q3V C7 N3 SING Y N 8 Q3V N4 C8 SING Y N 9 Q3V C14 C1 SING N N 10 Q3V C12 C13 SING N N 11 Q3V C12 O2 SING N N 12 Q3V N3 C9 SING N N 13 Q3V N3 C6 SING Y N 14 Q3V C9 C13 SING N N 15 Q3V C1 C SING N N 16 Q3V C1 C2 DOUB N E 17 Q3V C8 C6 DOUB Y N 18 Q3V C8 C4 SING Y N 19 Q3V C13 O3 SING N N 20 Q3V C2 C3 SING N N 21 Q3V C6 N2 SING Y N 22 Q3V N C4 SING N N 23 Q3V N C3 SING N N 24 Q3V C4 N1 DOUB Y N 25 Q3V N2 C5 DOUB Y N 26 Q3V N1 C5 SING Y N 27 Q3V C7 H1 SING N N 28 Q3V C9 H2 SING N N 29 Q3V O1 H3 SING N N 30 Q3V C5 H4 SING N N 31 Q3V O4 H5 SING N N 32 Q3V C3 H6 SING N N 33 Q3V C3 H7 SING N N 34 Q3V O3 H8 SING N N 35 Q3V C2 H9 SING N N 36 Q3V C10 H10 SING N N 37 Q3V C11 H11 SING N N 38 Q3V C11 H12 SING N N 39 Q3V C12 H13 SING N N 40 Q3V C13 H14 SING N N 41 Q3V C14 H15 SING N N 42 Q3V C14 H16 SING N N 43 Q3V C H17 SING N N 44 Q3V C H18 SING N N 45 Q3V C H19 SING N N 46 Q3V N H20 SING N N 47 Q3V O2 H21 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Q3V SMILES ACDLabs 12.01 "C/C(CO)=C\CNc1ncnc2c1ncn2C1OC(CO)C(O)C1O" Q3V InChI InChI 1.03 "InChI=1S/C15H21N5O5/c1-8(4-21)2-3-16-13-10-14(18-6-17-13)20(7-19-10)15-12(24)11(23)9(5-22)25-15/h2,6-7,9,11-12,15,21-24H,3-5H2,1H3,(H,16,17,18)/b8-2+/t9-,11-,12-,15-/m1/s1" Q3V InChIKey InChI 1.03 GOSWTRUMMSCNCW-HNNGNKQASA-N Q3V SMILES_CANONICAL CACTVS 3.385 "CC(/CO)=C\CNc1ncnc2n(cnc12)[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O" Q3V SMILES CACTVS 3.385 "CC(CO)=CCNc1ncnc2n(cnc12)[CH]3O[CH](CO)[CH](O)[CH]3O" Q3V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C/C(=C\CNc1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)/CO" Q3V SMILES "OpenEye OEToolkits" 2.0.7 "CC(=CCNc1c2c(ncn1)n(cn2)C3C(C(C(O3)CO)O)O)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Q3V "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2E)-4-hydroxy-3-methylbut-2-en-1-yl]adenosine" Q3V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{S},4~{R},5~{R})-2-(hydroxymethyl)-5-[6-[[(~{E})-3-methyl-4-oxidanyl-but-2-enyl]amino]purin-9-yl]oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Q3V "Create component" 2022-06-01 RCSB Q3V "Initial release" 2023-05-17 RCSB #