data_Q53 # _chem_comp.id Q53 _chem_comp.name " (R)-2-((R)-((R)-2-amino-2-phenylacetamido)(carboxy)methyl)-5-methyl-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H19 N3 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms cephalexin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-23 _chem_comp.pdbx_modified_date 2024-05-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 365.404 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Q53 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ISP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Q53 C10 C1 C 0 1 N N N N N N 2.341 8.975 -12.649 3.500 0.594 -0.355 C10 Q53 1 Q53 C13 C2 C 0 1 N N N N N N 3.831 7.155 -17.006 -2.322 -1.252 -0.105 C13 Q53 2 Q53 C15 C3 C 0 1 N N N N N N 0.537 7.472 -15.405 0.671 -2.241 0.254 C15 Q53 3 Q53 C01 C4 C 0 1 N N N N N N 4.269 10.501 -12.156 5.005 2.045 0.841 C01 Q53 4 Q53 C02 C5 C 0 1 Y N N N N N 6.862 7.685 -16.418 -4.806 0.465 -1.125 C02 Q53 5 Q53 C03 C6 C 0 1 N N R N N N 2.330 6.667 -13.892 1.061 0.184 -0.083 C03 Q53 6 Q53 C04 C7 C 0 1 Y N N N N N 5.888 8.566 -16.864 -4.156 0.377 0.092 C04 Q53 7 Q53 C05 C8 C 0 1 Y N N N N N 5.920 9.894 -16.473 -3.986 1.509 0.867 C05 Q53 8 Q53 C06 C9 C 0 1 N N N N N N 4.636 8.374 -13.476 2.607 1.718 1.698 C06 Q53 9 Q53 C07 C10 C 0 1 Y N N N N N 6.931 10.345 -15.638 -4.464 2.728 0.425 C07 Q53 10 Q53 C08 C11 C 0 1 N N N N N N 3.666 9.176 -12.621 3.656 1.394 0.674 C08 Q53 11 Q53 C09 C12 C 0 1 Y N N N N N 7.907 9.466 -15.194 -5.113 2.816 -0.792 C09 Q53 12 Q53 C11 C13 C 0 1 Y N N N N N 7.873 8.137 -15.583 -5.283 1.684 -1.568 C11 Q53 13 Q53 C12 C14 C 0 1 N N R N N N 4.772 8.074 -17.782 -3.634 -0.952 0.574 C12 Q53 14 Q53 C14 C15 C 0 1 N N R N N N 1.938 6.857 -15.359 0.089 -0.974 -0.317 C14 Q53 15 Q53 C16 C16 C 0 1 N N N N N N 1.339 9.805 -11.826 4.665 0.437 -1.246 C16 Q53 16 Q53 N17 N1 N 0 1 N N N N N N 5.334 7.345 -18.906 -4.605 -2.006 0.250 N17 Q53 17 Q53 N18 N2 N 0 1 N N N N N N 2.852 7.722 -16.091 -1.186 -0.682 0.342 N18 Q53 18 Q53 N19 N3 N 0 1 N N N N N N 1.734 7.719 -13.079 2.362 -0.126 -0.695 N19 Q53 19 Q53 O20 O1 O 0 1 N N N N N N 3.903 5.981 -17.153 -2.289 -2.007 -1.053 O20 Q53 20 Q53 O21 O2 O 0 1 N N N N N N 0.362 8.541 -15.886 0.082 -2.839 1.122 O21 Q53 21 Q53 O22 O3 O 0 1 N N N N N N 0.109 9.615 -12.034 4.808 1.181 -2.195 O22 Q53 22 Q53 O23 O4 O 0 1 N N N N N N 1.659 10.642 -10.939 5.571 -0.532 -1.006 O23 Q53 23 Q53 S24 S1 S 0 1 N N N N N N 4.125 6.655 -13.674 1.346 0.405 1.703 S24 Q53 24 Q53 H3 H3 H 0 1 N N N N N N 3.534 11.044 -11.544 5.050 2.949 0.234 H3 Q53 25 Q53 H4 H4 H 0 1 N N N N N N 5.171 10.303 -11.557 5.156 2.303 1.889 H4 Q53 26 Q53 H5 H5 H 0 1 N N N N N N 4.537 11.109 -13.032 5.784 1.353 0.521 H5 Q53 27 Q53 H6 H6 H 0 1 N N N N N N 6.833 6.649 -16.720 -4.934 -0.419 -1.733 H6 Q53 28 Q53 H7 H7 H 0 1 N N N N N N 1.977 5.683 -13.551 0.657 1.102 -0.511 H7 Q53 29 Q53 H8 H8 H 0 1 N N N N N N 5.158 10.578 -16.818 -3.479 1.441 1.818 H8 Q53 30 Q53 H9 H9 H 0 1 N N N N N N 5.627 8.395 -12.999 3.068 1.776 2.684 H9 Q53 31 Q53 H10 H10 H 0 1 N N N N N N 4.698 8.840 -14.470 2.145 2.675 1.456 H10 Q53 32 Q53 H11 H11 H 0 1 N N N N N N 6.958 11.381 -15.334 -4.332 3.612 1.031 H11 Q53 33 Q53 H13 H13 H 0 1 N N N N N N 8.695 9.818 -14.544 -5.488 3.768 -1.138 H13 Q53 34 Q53 H14 H14 H 0 1 N N N N N N 8.633 7.453 -15.236 -5.786 1.753 -2.521 H14 Q53 35 Q53 H15 H15 H 0 1 N N N N N N 4.202 8.942 -18.146 -3.484 -0.914 1.653 H15 Q53 36 Q53 H16 H16 H 0 1 N N N N N N 1.902 5.869 -15.842 -0.076 -1.100 -1.387 H16 Q53 37 Q53 H17 H17 H 0 1 N N N N N N 5.951 7.943 -19.417 -4.761 -2.061 -0.745 H17 Q53 38 Q53 H18 H18 H 0 1 N N N N N N 5.842 6.552 -18.569 -4.308 -2.897 0.620 H18 Q53 39 Q53 H20 H20 H 0 1 N N N N N N 2.807 8.713 -15.964 -1.212 -0.078 1.101 H20 Q53 40 Q53 H21 H21 H 0 1 N N N N N N 0.914 7.993 -13.581 2.426 -0.843 -1.345 H21 Q53 41 Q53 H23 H23 H 0 1 N N N N N N 0.873 11.011 -10.553 6.317 -0.595 -1.618 H23 Q53 42 Q53 O1 O5 O 0 1 N N N N N N -0.295 6.426 -15.087 1.845 -2.706 -0.203 O1 Q53 43 Q53 H1 H1 H 0 1 N N N N N N -1.189 6.650 -15.318 2.178 -3.522 0.194 H1 Q53 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Q53 N17 C12 SING N N 1 Q53 C12 C13 SING N N 2 Q53 C12 C04 SING N N 3 Q53 O20 C13 DOUB N N 4 Q53 C13 N18 SING N N 5 Q53 C04 C05 DOUB Y N 6 Q53 C04 C02 SING Y N 7 Q53 C05 C07 SING Y N 8 Q53 C02 C11 DOUB Y N 9 Q53 N18 C14 SING N N 10 Q53 O21 C15 DOUB N N 11 Q53 C07 C09 DOUB Y N 12 Q53 C11 C09 SING Y N 13 Q53 C15 C14 SING N N 14 Q53 C14 C03 SING N N 15 Q53 C03 S24 SING N N 16 Q53 C03 N19 SING N N 17 Q53 S24 C06 SING N N 18 Q53 C06 C08 SING N N 19 Q53 N19 C10 SING N N 20 Q53 C10 C08 DOUB N N 21 Q53 C10 C16 SING N N 22 Q53 C08 C01 SING N N 23 Q53 O22 C16 DOUB N N 24 Q53 C16 O23 SING N N 25 Q53 C01 H3 SING N N 26 Q53 C01 H4 SING N N 27 Q53 C01 H5 SING N N 28 Q53 C02 H6 SING N N 29 Q53 C03 H7 SING N N 30 Q53 C05 H8 SING N N 31 Q53 C06 H9 SING N N 32 Q53 C06 H10 SING N N 33 Q53 C07 H11 SING N N 34 Q53 C09 H13 SING N N 35 Q53 C11 H14 SING N N 36 Q53 C12 H15 SING N N 37 Q53 C14 H16 SING N N 38 Q53 N17 H17 SING N N 39 Q53 N17 H18 SING N N 40 Q53 N18 H20 SING N N 41 Q53 N19 H21 SING N N 42 Q53 O23 H23 SING N N 43 Q53 C15 O1 SING N N 44 Q53 O1 H1 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Q53 InChI InChI 1.06 "InChI=1S/C16H19N3O5S/c1-8-7-25-14(19-11(8)15(21)22)12(16(23)24)18-13(20)10(17)9-5-3-2-4-6-9/h2-6,10,12,14,19H,7,17H2,1H3,(H,18,20)(H,21,22)(H,23,24)/t10-,12+,14-/m1/s1" Q53 InChIKey InChI 1.06 MSGWVKZSYIMFHD-SCDSUCTJSA-N Q53 SMILES_CANONICAL CACTVS 3.385 "CC1=C(N[C@H](SC1)[C@H](NC(=O)[C@H](N)c2ccccc2)C(O)=O)C(O)=O" Q53 SMILES CACTVS 3.385 "CC1=C(N[CH](SC1)[CH](NC(=O)[CH](N)c2ccccc2)C(O)=O)C(O)=O" Q53 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(N[C@H](SC1)[C@@H](C(=O)O)NC(=O)[C@@H](c2ccccc2)N)C(=O)O" Q53 SMILES "OpenEye OEToolkits" 2.0.7 "CC1=C(NC(SC1)C(C(=O)O)NC(=O)C(c2ccccc2)N)C(=O)O" # _pdbx_chem_comp_identifier.comp_id Q53 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-[(1~{R})-1-[[(2~{R})-2-azanyl-2-phenyl-ethanoyl]amino]-2-oxidanyl-2-oxidanylidene-ethyl]-5-methyl-3,6-dihydro-2~{H}-1,3-thiazine-4-carboxylic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id Q53 _pdbx_chem_comp_synonyms.name cephalexin _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Q53 "Create component" 2023-03-23 PDBJ Q53 "Modify name" 2023-03-24 PDBJ Q53 "Initial release" 2024-05-15 RCSB #