data_Q7N # _chem_comp.id Q7N _chem_comp.name "~{N}-[(3-methoxyphenyl)methyl]-2-selanyl-benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H15 N O2 Se" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-05-26 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 320.245 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Q7N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6Z4K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Q7N C C1 C 0 1 Y N N N N N 1.341 0.670 8.513 -1.258 -2.133 0.252 C Q7N 1 Q7N O O1 O 0 1 N N N N N N 0.103 1.519 5.393 -1.272 1.446 -0.006 O Q7N 2 Q7N O1 O2 O 0 1 N N N N N N 4.093 3.799 2.711 5.646 -0.281 -1.577 O1 Q7N 3 Q7N C1 C2 C 0 1 Y N N N N N 1.683 -0.427 9.267 -2.123 -3.207 0.242 C1 Q7N 4 Q7N C6 C3 C 0 1 N N N N N N 0.835 1.731 6.362 -0.834 0.319 0.119 C6 Q7N 5 Q7N C5 C4 C 0 1 Y N N N N N 1.287 0.568 7.104 -1.756 -0.837 0.109 C5 Q7N 6 Q7N C4 C5 C 0 1 Y N N N N N 1.600 -0.663 6.339 -3.129 -0.637 -0.043 C4 Q7N 7 Q7N SE SE1 SE 0 0 N N N N N N 1.503 -0.694 4.669 -3.841 1.178 -0.246 SE Q7N 8 Q7N C3 C6 C 0 1 Y N N N N N 1.970 -1.692 7.200 -3.984 -1.720 -0.052 C3 Q7N 9 Q7N C2 C7 C 0 1 Y N N N N N 2.054 -1.619 8.598 -3.483 -3.002 0.085 C2 Q7N 10 Q7N N N1 N 0 1 N N N N N N 1.207 2.940 6.808 0.491 0.123 0.266 N Q7N 11 Q7N C7 C8 C 0 1 N N N N N N 0.704 4.173 6.233 1.404 1.268 0.276 C7 Q7N 12 Q7N C8 C9 C 0 1 Y N N N N N 1.580 4.739 5.140 2.819 0.780 0.453 C8 Q7N 13 Q7N C10 C10 C 0 1 Y N N N N N 2.440 3.935 4.416 3.586 0.472 -0.653 C10 Q7N 14 Q7N C11 C11 C 0 1 Y N N N N N 3.240 4.518 3.434 4.889 0.023 -0.489 C11 Q7N 15 Q7N C14 C12 C 0 1 N N N N N N 5.043 4.491 1.895 6.978 -0.737 -1.332 C14 Q7N 16 Q7N C12 C13 C 0 1 Y N N N N N 3.105 5.893 3.145 5.418 -0.114 0.786 C12 Q7N 17 Q7N C13 C14 C 0 1 Y N N N N N 2.254 6.686 3.864 4.646 0.196 1.889 C13 Q7N 18 Q7N C9 C15 C 0 1 Y N N N N N 1.452 6.103 4.840 3.350 0.647 1.723 C9 Q7N 19 Q7N H1 H1 H 0 1 N N N N N N 1.114 1.609 8.996 -0.197 -2.294 0.376 H1 Q7N 20 Q7N H2 H2 H 0 1 N N N N N N 1.669 -0.381 10.346 -1.739 -4.209 0.357 H2 Q7N 21 Q7N H3 H3 H 0 1 N N N N N N 1.863 -2.023 4.185 -3.796 1.344 -1.796 H3 Q7N 22 Q7N H4 H4 H 0 1 N N N N N N 2.217 -2.641 6.747 -5.047 -1.566 -0.170 H4 Q7N 23 Q7N H5 H5 H 0 1 N N N N N N 2.401 -2.471 9.164 -4.156 -3.846 0.077 H5 Q7N 24 Q7N H6 H6 H 0 1 N N N N N N 1.856 2.993 7.567 0.840 -0.777 0.366 H6 Q7N 25 Q7N H7 H7 H 0 1 N N N N N N 0.623 4.922 7.035 1.321 1.807 -0.668 H7 Q7N 26 Q7N H8 H8 H 0 1 N N N N N N -0.293 3.978 5.812 1.144 1.934 1.099 H8 Q7N 27 Q7N H9 H9 H 0 1 N N N N N N 2.491 2.873 4.608 3.172 0.579 -1.645 H9 Q7N 28 Q7N H10 H10 H 0 1 N N N N N N 5.671 3.761 1.364 7.533 0.033 -0.796 H10 Q7N 29 Q7N H11 H11 H 0 1 N N N N N N 4.511 5.117 1.164 6.947 -1.647 -0.733 H11 Q7N 30 Q7N H12 H12 H 0 1 N N N N N N 5.677 5.127 2.530 7.471 -0.944 -2.282 H12 Q7N 31 Q7N H13 H13 H 0 1 N N N N N N 3.684 6.326 2.342 6.431 -0.463 0.916 H13 Q7N 32 Q7N H14 H14 H 0 1 N N N N N N 2.205 7.749 3.677 5.057 0.089 2.882 H14 Q7N 33 Q7N H15 H15 H 0 1 N N N N N N 0.727 6.704 5.369 2.749 0.890 2.587 H15 Q7N 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Q7N C14 O1 SING N N 1 Q7N O1 C11 SING N N 2 Q7N C12 C11 DOUB Y N 3 Q7N C12 C13 SING Y N 4 Q7N C11 C10 SING Y N 5 Q7N C13 C9 DOUB Y N 6 Q7N C10 C8 DOUB Y N 7 Q7N SE C4 SING N N 8 Q7N C9 C8 SING Y N 9 Q7N C8 C7 SING N N 10 Q7N O C6 DOUB N N 11 Q7N C7 N SING N N 12 Q7N C4 C5 DOUB Y N 13 Q7N C4 C3 SING Y N 14 Q7N C6 N SING N N 15 Q7N C6 C5 SING N N 16 Q7N C5 C SING Y N 17 Q7N C3 C2 DOUB Y N 18 Q7N C C1 DOUB Y N 19 Q7N C2 C1 SING Y N 20 Q7N C H1 SING N N 21 Q7N C1 H2 SING N N 22 Q7N SE H3 SING N N 23 Q7N C3 H4 SING N N 24 Q7N C2 H5 SING N N 25 Q7N N H6 SING N N 26 Q7N C7 H7 SING N N 27 Q7N C7 H8 SING N N 28 Q7N C10 H9 SING N N 29 Q7N C14 H10 SING N N 30 Q7N C14 H11 SING N N 31 Q7N C14 H12 SING N N 32 Q7N C12 H13 SING N N 33 Q7N C13 H14 SING N N 34 Q7N C9 H15 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Q7N InChI InChI 1.03 "InChI=1S/C15H15NO2Se/c1-18-12-6-4-5-11(9-12)10-16-15(17)13-7-2-3-8-14(13)19/h2-9,19H,10H2,1H3,(H,16,17)" Q7N InChIKey InChI 1.03 UAPICSBUEQCMKS-UHFFFAOYSA-N Q7N SMILES_CANONICAL CACTVS 3.385 "COc1cccc(CNC(=O)c2ccccc2[SeH])c1" Q7N SMILES CACTVS 3.385 "COc1cccc(CNC(=O)c2ccccc2[SeH])c1" Q7N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cccc(c1)CNC(=O)c2ccccc2[SeH]" Q7N SMILES "OpenEye OEToolkits" 2.0.7 "COc1cccc(c1)CNC(=O)c2ccccc2[SeH]" # _pdbx_chem_comp_identifier.comp_id Q7N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(3-methoxyphenyl)methyl]-2-selanyl-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Q7N "Create component" 2020-05-26 PDBE Q7N "Initial release" 2020-09-16 RCSB Q7N "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id Q7N _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom SE _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #