data_Q8H # _chem_comp.id Q8H _chem_comp.name "~{N}-(pyridin-3-ylmethyl)-2-selanyl-benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H12 N2 O Se" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-05-26 _chem_comp.pdbx_modified_date 2020-09-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 291.207 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Q8H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6Z4L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Q8H N1 N1 N 0 1 Y N N 12.204 -6.274 11.722 5.388 -0.163 -1.176 N1 Q8H 1 Q8H C2 C1 C 0 1 Y N N 10.049 1.572 16.406 -2.964 -2.938 -0.004 C2 Q8H 2 Q8H C4 C2 C 0 1 Y N N 11.761 0.717 14.749 -2.521 -0.584 -0.008 C4 Q8H 3 Q8H C5 C3 C 0 1 Y N N 11.546 -0.601 15.473 -1.150 -0.845 -0.003 C5 Q8H 4 Q8H C6 C4 C 0 1 N N N 12.334 -1.753 14.995 -0.181 0.272 0.004 C6 Q8H 5 Q8H O O1 O 0 1 N N N 13.409 -1.490 14.458 -0.578 1.421 0.005 O Q8H 6 Q8H C3 C5 C 0 1 Y N N 10.941 1.749 15.321 -3.419 -1.631 -0.013 C3 Q8H 7 Q8H C1 C6 C 0 1 Y N N 9.928 0.351 17.053 -1.606 -3.203 0.011 C1 Q8H 8 Q8H C C7 C 0 1 Y N N 10.643 -0.748 16.554 -0.697 -2.165 0.012 C Q8H 9 Q8H N N2 N 0 1 N N N 11.874 -2.984 15.110 1.142 0.016 0.008 N Q8H 10 Q8H C7 C8 C 0 1 N N N 12.801 -4.068 14.731 2.102 1.123 0.014 C7 Q8H 11 Q8H C12 C9 C 0 1 Y N N 12.027 -4.006 10.989 5.444 -0.193 1.171 C12 Q8H 12 Q8H C11 C10 C 0 1 Y N N 11.988 -5.389 10.728 6.035 -0.421 -0.057 C11 Q8H 13 Q8H C10 C11 C 0 1 Y N N 12.472 -5.902 13.006 4.160 0.319 -1.172 C10 Q8H 14 Q8H C9 C12 C 0 1 Y N N 12.282 -3.587 12.304 4.153 0.313 1.216 C9 Q8H 15 Q8H C8 C13 C 0 1 Y N N 12.523 -4.534 13.318 3.504 0.572 0.018 C8 Q8H 16 Q8H SE SE1 SE 0 0 N N N 12.800 0.835 13.422 -3.168 1.266 -0.021 SE Q8H 17 Q8H H1 H1 H 0 1 N N N 9.449 2.407 16.738 -3.671 -3.754 -0.005 H1 Q8H 18 Q8H H2 H2 H 0 1 N N N 11.011 2.737 14.890 -4.480 -1.431 -0.025 H2 Q8H 19 Q8H H3 H3 H 0 1 N N N 9.296 0.249 17.923 -1.257 -4.225 0.023 H3 Q8H 20 Q8H H4 H4 H 0 1 N N N 10.503 -1.721 17.001 0.363 -2.374 0.015 H4 Q8H 21 Q8H H5 H5 H 0 1 N N N 10.948 -3.172 15.436 1.459 -0.900 0.007 H5 Q8H 22 Q8H H6 H6 H 0 1 N N N 12.672 -4.913 15.423 1.955 1.737 -0.875 H6 Q8H 23 Q8H H7 H7 H 0 1 N N N 13.835 -3.698 14.793 1.948 1.732 0.905 H7 Q8H 24 Q8H H8 H8 H 0 1 N N N 11.865 -3.287 10.199 5.979 -0.407 2.084 H8 Q8H 25 Q8H H9 H9 H 0 1 N N N 11.784 -5.742 9.728 7.040 -0.816 -0.100 H9 Q8H 26 Q8H H10 H10 H 0 1 N N N 12.642 -6.646 13.770 3.662 0.519 -2.109 H10 Q8H 27 Q8H H11 H11 H 0 1 N N N 12.293 -2.533 12.539 3.665 0.501 2.161 H11 Q8H 28 Q8H H12 H12 H 0 1 N N N 13.437 -0.457 13.185 -3.282 1.552 1.509 H12 Q8H 29 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Q8H C11 C12 DOUB Y N 1 Q8H C11 N1 SING Y N 2 Q8H C12 C9 SING Y N 3 Q8H N1 C10 DOUB Y N 4 Q8H C9 C8 DOUB Y N 5 Q8H C10 C8 SING Y N 6 Q8H C8 C7 SING N N 7 Q8H SE C4 SING N N 8 Q8H O C6 DOUB N N 9 Q8H C7 N SING N N 10 Q8H C4 C3 DOUB Y N 11 Q8H C4 C5 SING Y N 12 Q8H C6 N SING N N 13 Q8H C6 C5 SING N N 14 Q8H C3 C2 SING Y N 15 Q8H C5 C DOUB Y N 16 Q8H C2 C1 DOUB Y N 17 Q8H C C1 SING Y N 18 Q8H C2 H1 SING N N 19 Q8H C3 H2 SING N N 20 Q8H C1 H3 SING N N 21 Q8H C H4 SING N N 22 Q8H N H5 SING N N 23 Q8H C7 H6 SING N N 24 Q8H C7 H7 SING N N 25 Q8H C12 H8 SING N N 26 Q8H C11 H9 SING N N 27 Q8H C10 H10 SING N N 28 Q8H C9 H11 SING N N 29 Q8H SE H12 SING N N 30 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Q8H InChI InChI 1.03 "InChI=1S/C13H12N2OSe/c16-13(11-5-1-2-6-12(11)17)15-9-10-4-3-7-14-8-10/h1-8,17H,9H2,(H,15,16)" Q8H InChIKey InChI 1.03 JMKKHOHSFFBFIN-UHFFFAOYSA-N Q8H SMILES_CANONICAL CACTVS 3.385 "[SeH]c1ccccc1C(=O)NCc2cccnc2" Q8H SMILES CACTVS 3.385 "[SeH]c1ccccc1C(=O)NCc2cccnc2" Q8H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C(=O)NCc2cccnc2)[SeH]" Q8H SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C(=O)NCc2cccnc2)[SeH]" # _pdbx_chem_comp_identifier.comp_id Q8H _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-(pyridin-3-ylmethyl)-2-selanyl-benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Q8H "Create component" 2020-05-26 PDBE Q8H "Initial release" 2020-09-16 RCSB ##