data_Q8L # _chem_comp.id Q8L _chem_comp.name Piclidenoson _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H19 I N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-01 _chem_comp.pdbx_modified_date 2023-01-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 510.286 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CXW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Q8L O1 O1 O 0 1 N N N -35.419 1.437 13.821 -5.675 1.460 -2.184 O1 Q8L 1 Q8L C7 C1 C 0 1 Y N N -30.495 1.783 12.899 -1.134 1.156 0.367 C7 Q8L 2 Q8L O2 O2 O 0 1 N N N -33.890 -2.706 13.181 -6.621 -2.125 1.854 O2 Q8L 3 Q8L C2 C2 C 0 1 N N S -34.172 -1.644 15.303 -6.648 -0.415 0.227 C2 Q8L 4 Q8L C3 C3 C 0 1 N N N -33.953 -2.853 14.398 -7.183 -1.662 0.884 C3 Q8L 5 Q8L C4 C4 C 0 1 N N N -33.711 -5.262 14.215 -8.806 -3.473 1.033 C4 Q8L 6 Q8L C5 C5 C 0 1 N N R -33.358 0.467 14.680 -4.756 0.904 0.014 C5 Q8L 7 Q8L C6 C6 C 0 1 Y N N -31.861 0.178 12.669 -2.691 -0.268 0.869 C6 Q8L 8 Q8L C1 C7 C 0 1 N N R -34.670 0.224 13.942 -5.088 0.409 -1.414 C1 Q8L 9 Q8L C8 C8 C 0 1 Y N N -31.382 1.879 13.963 -2.356 1.702 -0.062 C8 Q8L 10 Q8L O3 O3 O 0 1 N N N -33.031 -0.763 15.297 -5.486 0.073 0.932 O3 Q8L 11 Q8L C9 C9 C 0 1 Y N N -30.391 3.674 14.765 -1.235 3.555 -0.832 C9 Q8L 12 Q8L C10 C10 C 0 1 Y N N -29.477 2.775 12.849 0.038 1.900 0.152 C10 Q8L 13 Q8L C11 C11 C 0 1 N N N -28.397 1.861 10.812 2.481 2.203 0.320 C11 Q8L 14 Q8L N N1 N 0 1 N N N -33.838 -4.038 14.984 -8.286 -2.261 0.394 N Q8L 15 Q8L C C12 C 0 1 N N S -35.360 -0.767 14.895 -6.106 -0.735 -1.190 C Q8L 16 Q8L O O4 O 0 1 N N N -35.959 -0.147 16.034 -7.154 -0.682 -2.160 O Q8L 17 Q8L C12 C13 C 0 1 Y N N -29.102 2.282 9.545 3.678 1.455 0.847 C12 Q8L 18 Q8L C13 C14 C 0 1 Y N N -29.127 1.444 8.436 4.366 0.584 0.024 C13 Q8L 19 Q8L C14 C15 C 0 1 Y N N -29.770 1.839 7.275 5.464 -0.103 0.507 C14 Q8L 20 Q8L C15 C16 C 0 1 Y N N -30.392 3.068 7.190 5.874 0.082 1.815 C15 Q8L 21 Q8L C16 C17 C 0 1 Y N N -30.373 3.905 8.292 5.186 0.953 2.638 C16 Q8L 22 Q8L C17 C18 C 0 1 Y N N -29.736 3.516 9.460 4.091 1.643 2.153 C17 Q8L 23 Q8L I I1 I 0 1 N N N -29.817 0.541 5.623 6.507 -1.424 -0.741 I Q8L 24 Q8L N1 N2 N 0 1 Y N N -32.259 0.834 13.799 -3.319 0.783 0.268 N1 Q8L 25 Q8L N2 N3 N 0 1 Y N N -30.809 0.708 12.088 -1.411 -0.045 0.931 N2 Q8L 26 Q8L N3 N4 N 0 1 Y N N -31.386 2.800 14.925 -2.358 2.894 -0.651 N3 Q8L 27 Q8L N4 N5 N 0 1 Y N N -29.457 3.717 13.809 -0.064 3.082 -0.446 N4 Q8L 28 Q8L N5 N6 N 0 1 N N N -28.519 2.821 11.898 1.269 1.413 0.554 N5 Q8L 29 Q8L H1 H1 H 0 1 N N N -36.231 1.264 13.359 -5.903 1.205 -3.088 H1 Q8L 30 Q8L H2 H2 H 0 1 N N N -34.348 -2.007 16.326 -7.419 0.353 0.179 H2 Q8L 31 Q8L H3 H3 H 0 1 N N N -33.629 -6.119 14.900 -9.695 -3.810 0.501 H3 Q8L 32 Q8L H4 H4 H 0 1 N N N -34.597 -5.387 13.576 -8.046 -4.254 1.003 H4 Q8L 33 Q8L H5 H5 H 0 1 N N N -32.810 -5.208 13.586 -9.063 -3.255 2.070 H5 Q8L 34 Q8L H6 H6 H 0 1 N N N -33.511 1.251 15.436 -5.066 1.943 0.128 H6 Q8L 35 Q8L H7 H7 H 0 1 N N N -32.366 -0.697 12.288 -3.185 -1.153 1.242 H7 Q8L 36 Q8L H8 H8 H 0 1 N N N -34.485 -0.247 12.965 -4.190 0.033 -1.905 H8 Q8L 37 Q8L H9 H9 H 0 1 N N N -30.332 4.454 15.510 -1.272 4.521 -1.315 H9 Q8L 38 Q8L H10 H10 H 0 1 N N N -28.825 0.904 11.145 2.395 3.160 0.835 H10 Q8L 39 Q8L H11 H11 H 0 1 N N N -27.329 1.726 10.586 2.602 2.376 -0.749 H11 Q8L 40 Q8L H12 H12 H 0 1 N N N -33.839 -4.089 15.983 -8.735 -1.891 -0.382 H12 Q8L 41 Q8L H13 H13 H 0 1 N N N -36.092 -1.369 14.337 -5.611 -1.706 -1.208 H13 Q8L 42 Q8L H14 H14 H 0 1 N N N -36.366 -0.810 16.579 -7.818 -1.378 -2.061 H14 Q8L 43 Q8L H15 H15 H 0 1 N N N -28.642 0.480 8.480 4.045 0.440 -0.998 H15 Q8L 44 Q8L H16 H16 H 0 1 N N N -30.885 3.372 6.279 6.732 -0.455 2.193 H16 Q8L 45 Q8L H17 H17 H 0 1 N N N -30.858 4.869 8.242 5.506 1.097 3.660 H17 Q8L 46 Q8L H18 H18 H 0 1 N N N -29.732 4.179 10.313 3.554 2.324 2.797 H18 Q8L 47 Q8L H19 H19 H 0 1 N N N -27.649 2.785 12.389 1.331 0.549 0.990 H19 Q8L 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Q8L I C14 SING N N 1 Q8L C15 C14 DOUB Y N 2 Q8L C15 C16 SING Y N 3 Q8L C14 C13 SING Y N 4 Q8L C16 C17 DOUB Y N 5 Q8L C13 C12 DOUB Y N 6 Q8L C17 C12 SING Y N 7 Q8L C12 C11 SING N N 8 Q8L C11 N5 SING N N 9 Q8L N5 C10 SING N N 10 Q8L N2 C6 DOUB Y N 11 Q8L N2 C7 SING Y N 12 Q8L C6 N1 SING Y N 13 Q8L C10 C7 DOUB Y N 14 Q8L C10 N4 SING Y N 15 Q8L C7 C8 SING Y N 16 Q8L O2 C3 DOUB N N 17 Q8L N1 C8 SING Y N 18 Q8L N1 C5 SING N N 19 Q8L N4 C9 DOUB Y N 20 Q8L O1 C1 SING N N 21 Q8L C1 C5 SING N N 22 Q8L C1 C SING N N 23 Q8L C8 N3 DOUB Y N 24 Q8L C4 N SING N N 25 Q8L C3 N SING N N 26 Q8L C3 C2 SING N N 27 Q8L C5 O3 SING N N 28 Q8L C9 N3 SING Y N 29 Q8L C C2 SING N N 30 Q8L C O SING N N 31 Q8L O3 C2 SING N N 32 Q8L O1 H1 SING N N 33 Q8L C2 H2 SING N N 34 Q8L C4 H3 SING N N 35 Q8L C4 H4 SING N N 36 Q8L C4 H5 SING N N 37 Q8L C5 H6 SING N N 38 Q8L C6 H7 SING N N 39 Q8L C1 H8 SING N N 40 Q8L C9 H9 SING N N 41 Q8L C11 H10 SING N N 42 Q8L C11 H11 SING N N 43 Q8L N H12 SING N N 44 Q8L C H13 SING N N 45 Q8L O H14 SING N N 46 Q8L C13 H15 SING N N 47 Q8L C15 H16 SING N N 48 Q8L C16 H17 SING N N 49 Q8L C17 H18 SING N N 50 Q8L N5 H19 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Q8L SMILES ACDLabs 12.01 "Ic1cccc(c1)CNc1ncnc2c1ncn2C1OC(C(O)C1O)C(=O)NC" Q8L InChI InChI 1.03 "InChI=1S/C18H19IN6O4/c1-20-17(28)14-12(26)13(27)18(29-14)25-8-24-11-15(22-7-23-16(11)25)21-6-9-3-2-4-10(19)5-9/h2-5,7-8,12-14,18,26-27H,6H2,1H3,(H,20,28)(H,21,22,23)/t12-,13+,14-,18+/m0/s1" Q8L InChIKey InChI 1.03 HUJXGQILHAUCCV-MOROJQBDSA-N Q8L SMILES_CANONICAL CACTVS 3.385 "CNC(=O)[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(NCc4cccc(I)c4)ncnc23" Q8L SMILES CACTVS 3.385 "CNC(=O)[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(NCc4cccc(I)c4)ncnc23" Q8L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3NCc4cccc(c4)I)O)O" Q8L SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=O)C1C(C(C(O1)n2cnc3c2ncnc3NCc4cccc(c4)I)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Q8L "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,3S,4R,5R)-3,4-dihydroxy-5-(6-{[(3-iodophenyl)methyl]amino}-9H-purin-9-yl)-N-methyloxolane-2-carboxamide (non-preferred name)" Q8L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{S},4~{R},5~{R})-5-[6-[(3-iodanylphenyl)methylamino]purin-9-yl]-~{N}-methyl-3,4-bis(oxidanyl)oxolane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Q8L "Create component" 2022-06-01 RCSB Q8L "Modify name" 2022-06-06 RCSB Q8L "Initial release" 2023-01-11 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id Q8L _pdbx_chem_comp_synonyms.name "(2S,3S,4R,5R)-3,4-dihydroxy-5-(6-{[(3-iodophenyl)methyl]amino}-9H-purin-9-yl)-N-methyloxolane-2-carboxamide (non-preferred name)" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type IUPAC #