data_Q8U # _chem_comp.id Q8U _chem_comp.name "1-(3,4-diazatricyclo[9.4.0.0^{2,7}]pentadeca-1(11),2(7),3,5,12,14-hexaen-5-yl)-~{N}3-[(7~{S})-7-pyrrolidin-1-yl-6,7,8,9-tetrahydro-5~{H}-benzo[7]annulen-3-yl]-1,2,4-triazole-3,5-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H34 N8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Bemcentinib _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-10-17 _chem_comp.pdbx_modified_date 2023-01-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 506.645 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Q8U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BA4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Q8U C10 C1 C 0 1 Y N N 12.166 -10.237 -24.113 4.677 0.151 -0.919 C10 Q8U 1 Q8U C11 C2 C 0 1 N N N 10.924 -10.869 -24.827 5.874 0.785 -1.599 C11 Q8U 2 Q8U C12 C3 C 0 1 N N N 10.811 -10.738 -26.308 6.864 1.230 -0.521 C12 Q8U 3 Q8U C13 C4 C 0 1 Y N N 12.604 -10.939 -22.930 3.464 0.815 -0.921 C13 Q8U 4 Q8U C14 C5 C 0 1 Y N N 13.704 -10.458 -22.166 2.365 0.235 -0.299 C14 Q8U 5 Q8U C15 C6 C 0 1 Y N N 14.379 -9.297 -22.563 2.492 -1.003 0.319 C15 Q8U 6 Q8U C16 C7 C 0 1 Y N N 13.951 -8.594 -23.733 3.710 -1.655 0.314 C16 Q8U 7 Q8U C21 C8 C 0 1 Y N N 15.626 -10.332 -17.799 -1.407 -1.531 -0.264 C21 Q8U 8 Q8U C24 C9 C 0 1 Y N N 15.940 -7.830 -17.755 -3.547 -0.339 -0.047 C24 Q8U 9 Q8U C27 C10 C 0 1 Y N N 16.861 -5.510 -16.541 -6.234 -0.292 0.088 C27 Q8U 10 Q8U C18 C11 C 0 1 Y N N 14.725 -10.524 -19.758 -0.052 0.163 -0.256 C18 Q8U 11 Q8U C01 C12 C 0 1 N N N 7.560 -10.391 -25.874 11.095 1.230 0.049 C01 Q8U 12 Q8U C02 C13 C 0 1 N N N 7.553 -10.779 -27.265 11.158 0.248 1.249 C02 Q8U 13 Q8U C03 C14 C 0 1 N N N 8.647 -9.887 -27.954 9.774 -0.443 1.160 C03 Q8U 14 Q8U C05 C15 C 0 1 N N N 8.146 -9.240 -25.835 9.616 1.669 0.036 C05 Q8U 15 Q8U C06 C16 C 0 1 N N S 10.362 -9.323 -26.880 7.781 0.091 -0.122 C06 Q8U 16 Q8U C07 C17 C 0 1 N N N 10.951 -8.084 -25.915 7.091 -1.040 0.615 C07 Q8U 17 Q8U C08 C18 C 0 1 N N N 12.460 -8.232 -25.718 6.131 -1.792 -0.311 C08 Q8U 18 Q8U C09 C19 C 0 1 Y N N 12.828 -9.090 -24.497 4.798 -1.073 -0.313 C09 Q8U 19 Q8U C28 C20 C 0 1 Y N N 15.997 -5.379 -17.615 -5.524 0.771 0.654 C28 Q8U 20 Q8U C29 C21 C 0 1 Y N N 15.485 -6.593 -18.286 -4.147 0.757 0.576 C29 Q8U 21 Q8U C30 C22 C 0 1 N N N 15.566 -3.963 -18.100 -6.267 1.871 1.355 C30 Q8U 22 Q8U C31 C23 C 0 1 N N N 16.684 -3.122 -18.671 -6.887 2.837 0.349 C31 Q8U 23 Q8U C32 C24 C 0 1 N N N 18.036 -3.144 -17.937 -7.554 2.074 -0.793 C32 Q8U 24 Q8U C33 C25 C 0 1 Y N N 17.992 -3.285 -16.402 -8.366 0.916 -0.280 C33 Q8U 25 Q8U C34 C26 C 0 1 Y N N 18.558 -2.253 -15.608 -9.741 0.991 -0.213 C34 Q8U 26 Q8U C35 C27 C 0 1 Y N N 18.539 -2.372 -14.246 -10.472 -0.096 0.234 C35 Q8U 27 Q8U C36 C28 C 0 1 Y N N 17.965 -3.536 -13.631 -9.830 -1.261 0.614 C36 Q8U 28 Q8U C37 C29 C 0 1 Y N N 17.424 -4.548 -14.409 -8.453 -1.343 0.563 C37 Q8U 29 Q8U C38 C30 C 0 1 Y N N 17.444 -4.417 -15.811 -7.714 -0.249 0.125 C38 Q8U 30 Q8U N04 N1 N 0 1 N N N 9.119 -9.181 -27.067 8.844 0.627 0.738 N04 Q8U 31 Q8U N17 N2 N 0 1 N N N 14.100 -11.200 -20.991 1.134 0.897 -0.294 N17 Q8U 32 Q8U N19 N3 N 0 1 Y N N 14.957 -9.234 -19.568 -1.257 0.669 -0.148 N19 Q8U 33 Q8U N20 N4 N 0 1 Y N N 15.504 -9.091 -18.362 -2.156 -0.409 -0.148 N20 Q8U 34 Q8U N22 N5 N 0 1 Y N N 15.151 -11.197 -18.633 -0.143 -1.170 -0.325 N22 Q8U 35 Q8U N23 N6 N 0 1 N N N 16.189 -10.639 -16.462 -1.885 -2.827 -0.306 N23 Q8U 36 Q8U N25 N7 N 0 1 Y N N 16.799 -7.861 -16.705 -4.297 -1.314 -0.538 N25 Q8U 37 Q8U N26 N8 N 0 1 Y N N 17.259 -6.756 -16.100 -5.581 -1.294 -0.479 N26 Q8U 38 Q8U H111 H1 H 0 0 N N N 10.028 -10.404 -24.391 6.350 0.056 -2.255 H111 Q8U 39 Q8U H112 H2 H 0 0 N N N 10.929 -11.944 -24.596 5.550 1.647 -2.182 H112 Q8U 40 Q8U H121 H3 H 0 0 N N N 10.077 -11.482 -26.651 7.464 2.055 -0.904 H121 Q8U 41 Q8U H122 H4 H 0 0 N N N 11.797 -10.971 -26.737 6.311 1.568 0.356 H122 Q8U 42 Q8U H131 H5 H 0 0 N N N 12.092 -11.838 -22.622 3.372 1.777 -1.403 H131 Q8U 43 Q8U H151 H6 H 0 0 N N N 15.219 -8.934 -21.989 1.639 -1.455 0.803 H151 Q8U 44 Q8U H161 H7 H 0 0 N N N 14.465 -7.696 -24.044 3.811 -2.618 0.793 H161 Q8U 45 Q8U H012 H8 H 0 0 N N N 6.531 -10.311 -25.493 11.750 2.085 0.217 H012 Q8U 46 Q8U H011 H9 H 0 0 N N N 8.117 -11.125 -25.274 11.355 0.724 -0.881 H011 Q8U 47 Q8U H021 H10 H 0 0 N N N 6.566 -10.591 -27.712 11.964 -0.475 1.120 H021 Q8U 48 Q8U H022 H11 H 0 0 N N N 7.805 -11.845 -27.368 11.266 0.788 2.190 H022 Q8U 49 Q8U H031 H12 H 0 0 N N N 9.431 -10.519 -28.397 9.795 -1.242 0.419 H031 Q8U 50 Q8U H032 H13 H 0 0 N N N 8.193 -9.263 -28.738 9.483 -0.836 2.134 H032 Q8U 51 Q8U H051 H14 H 0 0 N N N 8.714 -9.136 -24.899 9.507 2.622 0.554 H051 Q8U 52 Q8U H052 H15 H 0 0 N N N 7.401 -8.434 -25.903 9.266 1.764 -0.992 H052 Q8U 53 Q8U H061 H16 H 0 0 N N N 10.895 -9.210 -27.836 8.241 -0.314 -1.023 H061 Q8U 54 Q8U H072 H17 H 0 0 N N N 10.742 -7.118 -26.398 7.843 -1.734 0.991 H072 Q8U 55 Q8U H071 H18 H 0 0 N N N 10.452 -8.120 -24.935 6.531 -0.631 1.456 H071 Q8U 56 Q8U H081 H19 H 0 0 N N N 12.886 -8.702 -26.617 6.537 -1.809 -1.322 H081 Q8U 57 Q8U H082 H20 H 0 0 N N N 12.896 -7.231 -25.586 5.996 -2.811 0.051 H082 Q8U 58 Q8U H291 H21 H 0 0 N N N 14.808 -6.543 -19.126 -3.556 1.564 0.983 H291 Q8U 59 Q8U H302 H22 H 0 0 N N N 15.135 -3.424 -17.243 -7.056 1.436 1.968 H302 Q8U 60 Q8U H301 H23 H 0 0 N N N 14.799 -4.087 -18.878 -5.576 2.418 1.996 H301 Q8U 61 Q8U H312 H24 H 0 0 N N N 16.862 -3.466 -19.700 -7.633 3.451 0.854 H312 Q8U 62 Q8U H311 H25 H 0 0 N N N 16.336 -2.079 -18.688 -6.108 3.482 -0.057 H311 Q8U 63 Q8U H321 H26 H 0 0 N N N 18.616 -3.991 -18.332 -8.208 2.753 -1.340 H321 Q8U 64 Q8U H322 H27 H 0 0 N N N 18.556 -2.203 -18.170 -6.785 1.700 -1.468 H322 Q8U 65 Q8U H341 H28 H 0 0 N N N 18.998 -1.384 -16.074 -10.247 1.898 -0.510 H341 Q8U 66 Q8U H351 H29 H 0 0 N N N 18.957 -1.589 -13.631 -11.549 -0.034 0.286 H351 Q8U 67 Q8U H361 H30 H 0 0 N N N 17.955 -3.624 -12.555 -10.408 -2.109 0.951 H361 Q8U 68 Q8U H371 H31 H 0 0 N N N 16.994 -5.424 -13.947 -7.952 -2.252 0.862 H371 Q8U 69 Q8U H171 H33 H 0 0 N N N 13.963 -12.190 -20.979 1.105 1.866 -0.317 H171 Q8U 70 Q8U H232 H34 H 0 0 N N N 16.146 -11.625 -16.300 -2.839 -2.994 -0.250 H232 Q8U 71 Q8U H231 H35 H 0 0 N N N 17.141 -10.336 -16.424 -1.267 -3.569 -0.392 H231 Q8U 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Q8U C03 C02 SING N N 1 Q8U C03 N04 SING N N 2 Q8U C02 C01 SING N N 3 Q8U N04 C06 SING N N 4 Q8U N04 C05 SING N N 5 Q8U C06 C12 SING N N 6 Q8U C06 C07 SING N N 7 Q8U C12 C11 SING N N 8 Q8U C07 C08 SING N N 9 Q8U C01 C05 SING N N 10 Q8U C08 C09 SING N N 11 Q8U C11 C10 SING N N 12 Q8U C09 C10 DOUB Y N 13 Q8U C09 C16 SING Y N 14 Q8U C10 C13 SING Y N 15 Q8U C16 C15 DOUB Y N 16 Q8U C13 C14 DOUB Y N 17 Q8U C15 C14 SING Y N 18 Q8U C14 N17 SING N N 19 Q8U N17 C18 SING N N 20 Q8U C18 N19 DOUB Y N 21 Q8U C18 N22 SING Y N 22 Q8U N19 N20 SING Y N 23 Q8U C31 C30 SING N N 24 Q8U C31 C32 SING N N 25 Q8U N22 C21 DOUB Y N 26 Q8U N20 C21 SING Y N 27 Q8U N20 C24 SING N N 28 Q8U C29 C24 DOUB Y N 29 Q8U C29 C28 SING Y N 30 Q8U C30 C28 SING N N 31 Q8U C32 C33 SING N N 32 Q8U C21 N23 SING N N 33 Q8U C24 N25 SING Y N 34 Q8U C28 C27 DOUB Y N 35 Q8U N25 N26 DOUB Y N 36 Q8U C27 N26 SING Y N 37 Q8U C27 C38 SING N N 38 Q8U C33 C38 DOUB Y N 39 Q8U C33 C34 SING Y N 40 Q8U C38 C37 SING Y N 41 Q8U C34 C35 DOUB Y N 42 Q8U C37 C36 DOUB Y N 43 Q8U C35 C36 SING Y N 44 Q8U C11 H111 SING N N 45 Q8U C11 H112 SING N N 46 Q8U C12 H121 SING N N 47 Q8U C12 H122 SING N N 48 Q8U C13 H131 SING N N 49 Q8U C15 H151 SING N N 50 Q8U C16 H161 SING N N 51 Q8U C01 H012 SING N N 52 Q8U C01 H011 SING N N 53 Q8U C02 H021 SING N N 54 Q8U C02 H022 SING N N 55 Q8U C03 H031 SING N N 56 Q8U C03 H032 SING N N 57 Q8U C05 H051 SING N N 58 Q8U C05 H052 SING N N 59 Q8U C06 H061 SING N N 60 Q8U C07 H072 SING N N 61 Q8U C07 H071 SING N N 62 Q8U C08 H081 SING N N 63 Q8U C08 H082 SING N N 64 Q8U C29 H291 SING N N 65 Q8U C30 H302 SING N N 66 Q8U C30 H301 SING N N 67 Q8U C31 H312 SING N N 68 Q8U C31 H311 SING N N 69 Q8U C32 H321 SING N N 70 Q8U C32 H322 SING N N 71 Q8U C34 H341 SING N N 72 Q8U C35 H351 SING N N 73 Q8U C36 H361 SING N N 74 Q8U C37 H371 SING N N 75 Q8U N17 H171 SING N N 76 Q8U N23 H232 SING N N 77 Q8U N23 H231 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Q8U InChI InChI 1.06 "InChI=1S/C30H34N8/c31-29-33-30(32-24-13-10-20-11-14-25(15-12-22(20)18-24)37-16-3-4-17-37)36-38(29)27-19-23-8-5-7-21-6-1-2-9-26(21)28(23)35-34-27/h1-2,6,9-10,13,18-19,25H,3-5,7-8,11-12,14-17H2,(H3,31,32,33,36)/t25-/m0/s1" Q8U InChIKey InChI 1.06 KXMZDGSRSGHMMK-VWLOTQADSA-N Q8U SMILES_CANONICAL CACTVS 3.385 "Nc1nc(Nc2ccc3CC[C@@H](CCc3c2)N4CCCC4)nn1c5cc6CCCc7ccccc7c6nn5" Q8U SMILES CACTVS 3.385 "Nc1nc(Nc2ccc3CC[CH](CCc3c2)N4CCCC4)nn1c5cc6CCCc7ccccc7c6nn5" Q8U SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc-2c(c1)CCCc3c2nnc(c3)n4c(nc(n4)Nc5ccc6c(c5)CC[C@H](CC6)N7CCCC7)N" Q8U SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc-2c(c1)CCCc3c2nnc(c3)n4c(nc(n4)Nc5ccc6c(c5)CCC(CC6)N7CCCC7)N" # _pdbx_chem_comp_identifier.comp_id Q8U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "1-(3,4-diazatricyclo[9.4.0.0^{2,7}]pentadeca-1(11),2(7),3,5,12,14-hexaen-5-yl)-~{N}3-[(7~{S})-7-pyrrolidin-1-yl-6,7,8,9-tetrahydro-5~{H}-benzo[7]annulen-3-yl]-1,2,4-triazole-3,5-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Q8U "Create component" 2022-10-17 PDBE Q8U "Initial release" 2023-02-01 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id Q8U _pdbx_chem_comp_synonyms.name Bemcentinib _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #