data_Q8X # _chem_comp.id Q8X _chem_comp.name "(2~{R})-2-azanyl-3-[(6-pyridin-2-ylpyridin-3-yl)methylsulfanyl]propanal" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C14 H15 N3 O2 S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-20 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 289.353 _chem_comp.one_letter_code C _chem_comp.three_letter_code Q8X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AF3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Q8X N N N 0 1 N N N Y Y N 26.558 34.359 17.646 4.598 1.559 1.111 N Q8X 1 Q8X CA CA C 0 1 N N R N Y N 27.467 33.501 18.444 4.821 0.157 0.734 CA Q8X 2 Q8X C C C 0 1 N N N N Y Y 26.814 33.253 19.801 6.234 -0.011 0.235 C Q8X 3 Q8X O O O 0 1 N N N N Y Y 26.526 32.097 20.142 6.858 0.951 -0.145 O Q8X 4 Q8X CB CB C 0 1 N N N N N N 28.851 34.120 18.497 3.840 -0.236 -0.373 CB Q8X 5 Q8X SG SG S 0 1 N N N N N N 29.176 35.260 19.856 2.140 -0.035 0.227 SG Q8X 6 Q8X C10 C10 C 0 1 Y N N N N N 29.691 42.804 19.693 -5.029 1.243 -0.211 C10 Q8X 7 Q8X C11 C11 C 0 1 Y N N N N N 29.476 44.105 20.112 -6.372 1.388 0.091 C11 Q8X 8 Q8X C12 C12 C 0 1 Y N N N N N 29.243 44.354 21.455 -7.045 0.313 0.654 C12 Q8X 9 Q8X C13 C13 C 0 1 Y N N N N N 29.235 43.296 22.351 -6.360 -0.865 0.894 C13 Q8X 10 Q8X C3 C3 C 0 1 N N N N N N 30.522 36.288 19.194 1.141 -0.541 -1.200 C3 Q8X 11 Q8X C4 C4 C 0 1 Y N N N N N 30.318 37.744 19.528 -0.321 -0.428 -0.855 C4 Q8X 12 Q8X C5 C5 C 0 1 Y N N N N N 30.350 38.710 18.532 -0.993 -1.503 -0.293 C5 Q8X 13 Q8X C6 C6 C 0 1 Y N N N N N 30.138 40.038 18.876 -2.337 -1.358 0.009 C6 Q8X 14 Q8X C7 C7 C 0 1 Y N N N N N 29.904 40.371 20.206 -2.964 -0.144 -0.260 C7 Q8X 15 Q8X C8 C8 C 0 1 Y N N N N N 30.073 38.124 20.840 -1.005 0.752 -1.090 C8 Q8X 16 Q8X C9 C9 C 0 1 Y N N N N N 29.673 41.776 20.621 -4.403 0.028 0.058 C9 Q8X 17 Q8X N2 N2 N 0 1 Y N N N N N 29.879 39.412 21.148 -2.284 0.861 -0.798 N2 Q8X 18 Q8X N3 N3 N 0 1 Y N N N N N 29.441 42.044 21.919 -5.081 -0.976 0.596 N3 Q8X 19 Q8X H H H 0 1 N N N Y Y N 25.648 33.944 17.616 4.738 2.172 0.322 H Q8X 20 Q8X H2 H1 H 0 1 N Y N Y Y N 26.498 35.264 18.068 3.679 1.684 1.508 H2 Q8X 21 Q8X HA HA H 0 1 N N N N Y N 27.555 32.530 17.935 4.665 -0.483 1.602 HA Q8X 22 Q8X HB3 HB3 H 0 1 N N N N N N 29.581 33.300 18.568 3.997 0.403 -1.241 HB3 Q8X 23 Q8X HB2 HB2 H 0 1 N N N N N N 29.007 34.669 17.557 4.006 -1.277 -0.653 HB2 Q8X 24 Q8X H12 H12 H 0 1 N N N N N N 29.872 42.592 18.650 -4.476 2.058 -0.654 H12 Q8X 25 Q8X H13 H13 H 0 1 N N N N N N 29.490 44.917 19.400 -6.885 2.318 -0.105 H13 Q8X 26 Q8X H14 H14 H 0 1 N N N N N N 29.069 45.362 21.800 -8.093 0.394 0.901 H14 Q8X 27 Q8X H15 H15 H 0 1 N N N N N N 29.062 43.481 23.401 -6.880 -1.704 1.332 H15 Q8X 28 Q8X H8 H8 H 0 1 N N N N N N 30.555 36.173 18.101 1.366 0.106 -2.048 H8 Q8X 29 Q8X H7 H7 H 0 1 N N N N N N 31.475 35.952 19.627 1.375 -1.574 -1.459 H7 Q8X 30 Q8X H9 H9 H 0 1 N N N N N N 30.537 38.433 17.505 -0.481 -2.433 -0.096 H9 Q8X 31 Q8X H10 H10 H 0 1 N N N N N N 30.155 40.806 18.117 -2.891 -2.175 0.447 H10 Q8X 32 Q8X H11 H11 H 0 1 N N N N N N 30.039 37.375 21.618 -0.483 1.592 -1.523 H11 Q8X 33 Q8X OXT OXT O 0 1 N Y N N Y Y ? ? ? 6.798 -1.228 0.214 O1 Q8X 34 Q8X HXT HXT H 0 1 N Y N N Y Y ? ? ? 7.706 -1.286 -0.114 H1 Q8X 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Q8X N CA SING N N 1 Q8X CA CB SING N N 2 Q8X CA C SING N N 3 Q8X CB SG SING N N 4 Q8X C5 C6 DOUB Y N 5 Q8X C5 C4 SING Y N 6 Q8X C6 C7 SING Y N 7 Q8X C3 C4 SING N N 8 Q8X C3 SG SING N N 9 Q8X C4 C8 DOUB Y N 10 Q8X C10 C11 DOUB Y N 11 Q8X C10 C9 SING Y N 12 Q8X C O DOUB N N 13 Q8X C11 C12 SING Y N 14 Q8X C7 C9 SING N N 15 Q8X C7 N2 DOUB Y N 16 Q8X C9 N3 DOUB Y N 17 Q8X C8 N2 SING Y N 18 Q8X C12 C13 DOUB Y N 19 Q8X N3 C13 SING Y N 20 Q8X N H SING N N 21 Q8X N H2 SING N N 22 Q8X CA HA SING N N 23 Q8X CB HB3 SING N N 24 Q8X CB HB2 SING N N 25 Q8X C10 H12 SING N N 26 Q8X C11 H13 SING N N 27 Q8X C12 H14 SING N N 28 Q8X C13 H15 SING N N 29 Q8X C3 H8 SING N N 30 Q8X C3 H7 SING N N 31 Q8X C5 H9 SING N N 32 Q8X C6 H10 SING N N 33 Q8X C8 H11 SING N N 34 Q8X C OXT SING N N 35 Q8X OXT HXT SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Q8X InChI InChI 1.06 "InChI=1S/C14H15N3O2S/c15-11(14(18)19)9-20-8-10-4-5-13(17-7-10)12-3-1-2-6-16-12/h1-7,11H,8-9,15H2,(H,18,19)/t11-/m0/s1" Q8X InChIKey InChI 1.06 ANWKVUXJRPIXEU-NSHDSACASA-N Q8X SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CSCc1ccc(nc1)c2ccccn2)C(O)=O" Q8X SMILES CACTVS 3.385 "N[CH](CSCc1ccc(nc1)c2ccccn2)C(O)=O" Q8X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccnc(c1)c2ccc(cn2)CSC[C@@H](C(=O)O)N" Q8X SMILES "OpenEye OEToolkits" 2.0.7 "c1ccnc(c1)c2ccc(cn2)CSCC(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id Q8X _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-azanyl-3-[(6-pyridin-2-ylpyridin-3-yl)methylsulfanyl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Q8X "Create component" 2022-07-21 EBI Q8X "Modify descriptor" 2022-08-22 RCSB Q8X "Initial release" 2023-08-16 RCSB Q8X "Modify backbone" 2023-11-03 PDBE Q8X "Other modification" 2024-06-28 PDBE Q8X "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id Q8X _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #