data_Q8Y # _chem_comp.id Q8Y _chem_comp.name "N-(3-phenylpropyl)adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H23 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-01 _chem_comp.pdbx_modified_date 2023-01-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 385.417 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Q8Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CXZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Q8Y C4 C1 C 0 1 N N R -33.207 0.319 14.785 3.972 0.107 -0.333 C4 Q8Y 1 Q8Y C5 C2 C 0 1 Y N N -31.778 0.171 12.697 1.926 -1.287 0.156 C5 Q8Y 2 Q8Y C6 C3 C 0 1 Y N N -30.437 1.784 12.973 0.326 0.127 -0.222 C6 Q8Y 3 Q8Y C3 C4 C 0 1 N N N -33.630 -3.039 15.891 6.749 -2.201 0.167 C3 Q8Y 4 Q8Y C2 C5 C 0 1 N N R -33.888 -1.550 15.956 6.033 -0.888 -0.152 C2 Q8Y 5 Q8Y C1 C6 C 0 1 N N R -34.515 -0.094 14.123 4.539 0.658 0.994 C1 Q8Y 6 Q8Y C C7 C 0 1 N N S -35.110 -1.057 15.166 5.926 -0.012 1.115 C Q8Y 7 Q8Y O1 O1 O 0 1 N N N -35.339 1.049 13.928 4.673 2.079 0.929 O1 Q8Y 8 Q8Y O2 O2 O 0 1 N N N -34.121 -3.598 14.680 6.909 -2.961 -1.034 O2 Q8Y 9 Q8Y N N1 N 0 1 Y N N -32.172 0.768 13.864 2.530 -0.123 -0.218 N Q8Y 10 Q8Y O O3 O 0 1 N N N -36.045 -0.418 16.029 6.959 0.976 1.130 O Q8Y 11 Q8Y C10 C8 C 0 1 N N N -28.224 1.866 10.973 -3.333 0.998 -0.371 C10 Q8Y 12 Q8Y C11 C9 C 0 1 N N N -29.054 2.182 9.747 -4.535 0.104 -0.060 C11 Q8Y 13 Q8Y C12 C10 C 0 1 N N N -28.946 1.105 8.673 -5.827 0.899 -0.260 C12 Q8Y 14 Q8Y C13 C11 C 0 1 Y N N -29.801 1.375 7.459 -7.011 0.018 0.046 C13 Q8Y 15 Q8Y C14 C12 C 0 1 Y N N -29.257 1.958 6.322 -7.518 -0.037 1.331 C14 Q8Y 16 Q8Y C15 C13 C 0 1 Y N N -30.044 2.207 5.210 -8.603 -0.845 1.612 C15 Q8Y 17 Q8Y C16 C14 C 0 1 Y N N -31.382 1.879 5.218 -9.183 -1.598 0.608 C16 Q8Y 18 Q8Y C17 C15 C 0 1 Y N N -31.935 1.301 6.341 -8.677 -1.542 -0.677 C17 Q8Y 19 Q8Y C18 C16 C 0 1 Y N N -31.151 1.050 7.455 -7.595 -0.730 -0.959 C18 Q8Y 20 Q8Y C7 C17 C 0 1 Y N N -31.312 1.835 14.043 1.539 0.793 -0.464 C7 Q8Y 21 Q8Y C8 C18 C 0 1 Y N N -30.336 3.613 14.901 0.366 2.697 -0.996 C8 Q8Y 22 Q8Y C9 C19 C 0 1 Y N N -29.423 2.785 12.955 -0.871 0.841 -0.402 C9 Q8Y 23 Q8Y N1 N2 N 0 1 Y N N -30.741 0.735 12.125 0.633 -1.140 0.147 N1 Q8Y 24 Q8Y N2 N3 N 0 1 Y N N -31.321 2.720 15.038 1.512 2.066 -0.846 N2 Q8Y 25 Q8Y N3 N4 N 0 1 Y N N -29.408 3.697 13.943 -0.799 2.113 -0.780 N3 Q8Y 26 Q8Y N4 N5 N 0 1 N N N -28.434 2.831 12.040 -2.096 0.238 -0.179 N4 Q8Y 27 Q8Y O3 O4 O 0 1 N N N -32.743 -0.843 15.436 4.665 -1.142 -0.541 O3 Q8Y 28 Q8Y H1 H1 H 0 1 N N N -33.417 1.110 15.520 4.181 0.797 -1.151 H1 Q8Y 29 Q8Y H2 H2 H 0 1 N N N -32.279 -0.691 12.282 2.444 -2.198 0.417 H2 Q8Y 30 Q8Y H3 H3 H 0 1 N N N -34.132 -3.527 16.740 7.729 -1.986 0.593 H3 Q8Y 31 Q8Y H4 H4 H 0 1 N N N -32.546 -3.218 15.954 6.159 -2.773 0.882 H4 Q8Y 32 Q8Y H5 H5 H 0 1 N N N -34.033 -1.273 17.011 6.560 -0.351 -0.941 H5 Q8Y 33 Q8Y H6 H6 H 0 1 N N N -34.319 -0.627 13.181 3.902 0.371 1.830 H6 Q8Y 34 Q8Y H7 H7 H 0 1 N N N -35.575 -1.909 14.648 5.975 -0.630 2.012 H7 Q8Y 35 Q8Y H8 H8 H 0 1 N N N -36.153 0.786 13.515 5.025 2.478 1.737 H8 Q8Y 36 Q8Y H9 H9 H 0 1 N N N -33.945 -4.532 14.667 7.357 -3.808 -0.906 H9 Q8Y 37 Q8Y H10 H10 H 0 1 N N N -36.384 -1.049 16.653 7.851 0.610 1.205 H10 Q8Y 38 Q8Y H11 H11 H 0 1 N N N -28.500 0.866 11.340 -3.393 1.341 -1.404 H11 Q8Y 39 Q8Y H12 H12 H 0 1 N N N -27.160 1.873 10.693 -3.338 1.859 0.298 H12 Q8Y 40 Q8Y H13 H13 H 0 1 N N N -28.709 3.137 9.324 -4.531 -0.756 -0.729 H13 Q8Y 41 Q8Y H14 H14 H 0 1 N N N -30.108 2.274 10.049 -4.476 -0.238 0.973 H14 Q8Y 42 Q8Y H15 H15 H 0 1 N N N -29.257 0.145 9.111 -5.832 1.760 0.408 H15 Q8Y 43 Q8Y H16 H16 H 0 1 N N N -27.896 1.039 8.351 -5.887 1.241 -1.293 H16 Q8Y 44 Q8Y H17 H17 H 0 1 N N N -28.209 2.220 6.305 -7.065 0.551 2.116 H17 Q8Y 45 Q8Y H18 H18 H 0 1 N N N -29.607 2.660 4.333 -8.998 -0.889 2.616 H18 Q8Y 46 Q8Y H19 H19 H 0 1 N N N -31.994 2.073 4.350 -10.031 -2.230 0.828 H19 Q8Y 47 Q8Y H20 H20 H 0 1 N N N -32.984 1.043 6.352 -9.130 -2.130 -1.462 H20 Q8Y 48 Q8Y H21 H21 H 0 1 N N N -31.594 0.597 8.329 -7.200 -0.686 -1.964 H21 Q8Y 49 Q8Y H22 H22 H 0 1 N N N -30.283 4.370 15.669 0.379 3.731 -1.306 H22 Q8Y 50 Q8Y H23 H23 H 0 1 N N N -27.585 2.829 12.568 -2.136 -0.689 0.105 H23 Q8Y 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Q8Y C15 C16 DOUB Y N 1 Q8Y C15 C14 SING Y N 2 Q8Y C16 C17 SING Y N 3 Q8Y C14 C13 DOUB Y N 4 Q8Y C17 C18 DOUB Y N 5 Q8Y C18 C13 SING Y N 6 Q8Y C13 C12 SING N N 7 Q8Y C12 C11 SING N N 8 Q8Y C11 C10 SING N N 9 Q8Y C10 N4 SING N N 10 Q8Y N4 C9 SING N N 11 Q8Y N1 C5 DOUB Y N 12 Q8Y N1 C6 SING Y N 13 Q8Y C5 N SING Y N 14 Q8Y C9 C6 SING Y N 15 Q8Y C9 N3 DOUB Y N 16 Q8Y C6 C7 DOUB Y N 17 Q8Y N C7 SING Y N 18 Q8Y N C4 SING N N 19 Q8Y O1 C1 SING N N 20 Q8Y N3 C8 SING Y N 21 Q8Y C7 N2 SING Y N 22 Q8Y C1 C4 SING N N 23 Q8Y C1 C SING N N 24 Q8Y O2 C3 SING N N 25 Q8Y C4 O3 SING N N 26 Q8Y C8 N2 DOUB Y N 27 Q8Y C C2 SING N N 28 Q8Y C O SING N N 29 Q8Y O3 C2 SING N N 30 Q8Y C3 C2 SING N N 31 Q8Y C4 H1 SING N N 32 Q8Y C5 H2 SING N N 33 Q8Y C3 H3 SING N N 34 Q8Y C3 H4 SING N N 35 Q8Y C2 H5 SING N N 36 Q8Y C1 H6 SING N N 37 Q8Y C H7 SING N N 38 Q8Y O1 H8 SING N N 39 Q8Y O2 H9 SING N N 40 Q8Y O H10 SING N N 41 Q8Y C10 H11 SING N N 42 Q8Y C10 H12 SING N N 43 Q8Y C11 H13 SING N N 44 Q8Y C11 H14 SING N N 45 Q8Y C12 H15 SING N N 46 Q8Y C12 H16 SING N N 47 Q8Y C14 H17 SING N N 48 Q8Y C15 H18 SING N N 49 Q8Y C16 H19 SING N N 50 Q8Y C17 H20 SING N N 51 Q8Y C18 H21 SING N N 52 Q8Y C8 H22 SING N N 53 Q8Y N4 H23 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Q8Y SMILES ACDLabs 12.01 "OCC1OC(n2cnc3c(NCCCc4ccccc4)ncnc32)C(O)C1O" Q8Y InChI InChI 1.03 "InChI=1S/C19H23N5O4/c25-9-13-15(26)16(27)19(28-13)24-11-23-14-17(21-10-22-18(14)24)20-8-4-7-12-5-2-1-3-6-12/h1-3,5-6,10-11,13,15-16,19,25-27H,4,7-9H2,(H,20,21,22)/t13-,15-,16-,19-/m1/s1" Q8Y InChIKey InChI 1.03 UBRRRMDHTZACMR-NVQRDWNXSA-N Q8Y SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(NCCCc4ccccc4)ncnc23" Q8Y SMILES CACTVS 3.385 "OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(NCCCc4ccccc4)ncnc23" Q8Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCCNc2c3c(ncn2)n(cn3)[C@H]4[C@@H]([C@@H]([C@H](O4)CO)O)O" Q8Y SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCCNc2c3c(ncn2)n(cn3)C4C(C(C(O4)CO)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Q8Y "SYSTEMATIC NAME" ACDLabs 12.01 "N-(3-phenylpropyl)adenosine" Q8Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{S},4~{R},5~{R})-2-(hydroxymethyl)-5-[6-(3-phenylpropylamino)purin-9-yl]oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Q8Y "Create component" 2022-06-01 RCSB Q8Y "Initial release" 2023-01-11 RCSB #