data_Q9K # _chem_comp.id Q9K _chem_comp.name "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl-(3-azanylpropyl)amino]methyl]oxolane-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H34 N12 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-05-28 _chem_comp.pdbx_modified_date 2021-05-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 626.624 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Q9K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6Z64 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Q9K O3 O1 O 0 1 N N N 19.046 9.625 16.164 -6.922 -0.949 0.320 O3 Q9K 1 Q9K C4 C1 C 0 1 N N N 15.858 10.875 12.837 -1.603 -0.809 0.082 C4 Q9K 2 Q9K C5 C2 C 0 1 N N N 17.044 10.988 12.888 -2.402 0.006 -0.193 C5 Q9K 3 Q9K O4 O2 O 0 1 N N N 15.703 8.402 9.812 3.250 -0.700 -0.232 O4 Q9K 4 Q9K C6 C3 C 0 1 Y N N 18.416 11.331 12.860 -3.377 0.999 -0.528 C6 Q9K 5 Q9K N1 N1 N 0 1 N N N 13.781 9.852 11.906 0.552 -1.711 -0.476 N1 Q9K 6 Q9K C7 C4 C 0 1 Y N N 20.264 12.286 12.412 -4.362 2.658 -1.531 C7 Q9K 7 Q9K C8 C5 C 0 1 Y N N 21.322 13.079 11.938 -4.781 3.737 -2.332 C8 Q9K 8 Q9K N2 N2 N 0 1 Y N N 18.883 12.449 12.353 -3.260 1.877 -1.497 N2 Q9K 9 Q9K C9 C6 C 0 1 Y N N 22.755 11.450 12.741 -6.733 3.845 -1.105 C9 Q9K 10 Q9K O5 O3 O 0 1 N N N 17.839 10.295 7.953 6.399 -2.194 -0.861 O5 Q9K 11 Q9K C10 C7 C 0 1 Y N N 20.595 11.085 12.998 -5.219 2.222 -0.505 C10 Q9K 12 Q9K O6 O4 O 0 1 N N N 15.503 11.640 8.322 4.518 -3.896 -1.082 O6 Q9K 13 Q9K C11 C8 C 0 1 N N R 19.282 9.135 13.868 -5.085 0.393 1.241 C11 Q9K 14 Q9K C12 C9 C 0 1 N N R 18.482 7.015 13.714 -4.446 -1.056 2.931 C12 Q9K 15 Q9K N3 N3 N 0 1 N N N 21.150 14.198 11.222 -3.981 4.212 -3.356 N3 Q9K 16 Q9K C13 C10 C 0 1 N N N 17.275 6.333 13.133 -3.242 -1.936 3.271 C13 Q9K 17 Q9K C14 C11 C 0 1 N N S 18.348 7.473 15.182 -5.443 -1.844 2.060 C14 Q9K 18 Q9K C15 C12 C 0 1 N N R 18.381 8.998 15.080 -5.566 -1.002 0.767 C15 Q9K 19 Q9K N4 N4 N 0 1 Y N N 22.579 12.628 12.131 -5.962 4.291 -2.080 N4 Q9K 20 Q9K N N5 N 0 1 N N N 12.543 6.971 15.058 -1.298 -5.185 -3.390 N Q9K 21 Q9K C C13 C 0 1 N N N 11.974 8.110 14.314 -0.738 -3.828 -3.348 C Q9K 22 Q9K O O5 O 0 1 N N N 18.776 8.200 12.939 -4.021 0.086 2.168 O Q9K 23 Q9K C1 C14 C 0 1 N N N 12.294 8.086 12.827 -0.408 -3.457 -1.900 C1 Q9K 24 Q9K C16 C15 C 0 1 N N N 13.869 9.864 10.436 1.668 -2.549 -0.019 C16 Q9K 25 Q9K C17 C16 C 0 1 N N R 15.262 9.772 9.838 2.970 -2.053 -0.652 C17 Q9K 26 Q9K C18 C17 C 0 1 N N R 16.809 8.325 8.932 4.666 -0.519 -0.452 C18 Q9K 27 Q9K C19 C18 C 0 1 N N R 16.672 9.481 7.920 5.309 -1.850 -0.003 C19 Q9K 28 Q9K C2 C19 C 0 1 N N N 13.711 8.500 12.469 0.175 -2.043 -1.857 C2 Q9K 29 Q9K C20 C20 C 0 1 N N S 15.407 10.223 8.390 4.168 -2.882 -0.138 C20 Q9K 30 Q9K C21 C21 C 0 1 Y N N 15.793 6.379 7.667 4.609 1.075 1.504 C21 Q9K 31 Q9K C22 C22 C 0 1 Y N N 17.426 5.035 7.547 6.369 2.288 1.138 C22 Q9K 32 Q9K C23 C23 C 0 1 Y N N 18.371 4.022 7.269 7.441 3.197 1.126 C23 Q9K 33 Q9K C24 C24 C 0 1 Y N N 19.919 5.307 8.406 8.214 2.207 -0.811 C24 Q9K 34 Q9K C25 C25 C 0 1 Y N N 17.886 6.126 8.268 6.292 1.339 0.104 C25 Q9K 35 Q9K C3 C26 C 0 1 N N N 14.389 10.892 12.740 -0.601 -1.831 0.427 C3 Q9K 36 Q9K N10 N6 N 0 1 Y N N 19.630 4.199 7.719 8.328 3.117 0.139 N10 Q9K 37 Q9K N11 N7 N 0 1 Y N N 19.116 6.320 8.741 7.228 1.336 -0.840 N11 Q9K 38 Q9K N5 N8 N 0 1 Y N N 21.830 10.605 13.207 -6.384 2.839 -0.331 N5 Q9K 39 Q9K N6 N9 N 0 1 Y N N 19.401 10.452 13.291 -4.579 1.176 0.111 N6 Q9K 40 Q9K N7 N10 N 0 1 Y N N 16.819 6.996 8.328 5.170 0.593 0.358 N7 Q9K 41 Q9K N8 N11 N 0 1 Y N N 16.104 5.197 7.181 5.315 2.069 1.959 N8 Q9K 42 Q9K N9 N12 N 0 1 N N N 18.090 2.912 6.565 7.569 4.154 2.117 N9 Q9K 43 Q9K O1 O6 O 0 1 N N N 16.250 7.274 12.906 -2.381 -1.238 4.173 O1 Q9K 44 Q9K O2 O7 O 0 1 N N N 19.497 7.038 15.883 -6.709 -1.944 2.714 O2 Q9K 45 Q9K H1 H1 H 0 1 N N N 18.510 9.560 16.946 -7.269 -1.798 0.013 H1 Q9K 46 Q9K H3 H3 H 0 1 N N N 23.781 11.141 12.875 -7.686 4.324 -0.936 H3 Q9K 47 Q9K H4 H4 H 0 1 N N N 18.586 9.790 7.655 6.802 -3.050 -0.661 H4 Q9K 48 Q9K H5 H5 H 0 1 N N N 14.691 12.028 8.626 5.301 -4.407 -0.838 H5 Q9K 49 Q9K H6 H6 H 0 1 N N N 20.286 8.808 14.175 -5.891 0.926 1.746 H6 Q9K 50 Q9K H7 H7 H 0 1 N N N 19.335 6.323 13.652 -4.935 -0.727 3.848 H7 Q9K 51 Q9K H8 H8 H 0 1 N N N 22.040 14.544 10.925 -4.280 4.956 -3.901 H8 Q9K 52 Q9K H9 H9 H 0 1 N N N 20.586 13.998 10.421 -3.120 3.799 -3.530 H9 Q9K 53 Q9K H10 H10 H 0 1 N N N 16.916 5.567 13.836 -3.587 -2.859 3.738 H10 Q9K 54 Q9K H11 H11 H 0 1 N N N 17.549 5.857 12.180 -2.696 -2.174 2.358 H11 Q9K 55 Q9K H12 H12 H 0 1 N N N 17.406 7.119 15.626 -5.051 -2.836 1.835 H12 Q9K 56 Q9K H13 H13 H 0 1 N N N 17.379 9.410 14.889 -4.915 -1.392 -0.015 H13 Q9K 57 Q9K H14 H14 H 0 1 N N N 12.297 7.047 16.024 -1.524 -5.454 -4.335 H14 Q9K 58 Q9K H15 H15 H 0 1 N N N 12.179 6.116 14.688 -0.668 -5.850 -2.966 H15 Q9K 59 Q9K H17 H17 H 0 1 N N N 12.376 9.040 14.741 0.171 -3.791 -3.948 H17 Q9K 60 Q9K H18 H18 H 0 1 N N N 10.881 8.093 14.435 -1.466 -3.122 -3.747 H18 Q9K 61 Q9K H19 H19 H 0 1 N N N 11.599 8.770 12.317 -1.317 -3.493 -1.300 H19 Q9K 62 Q9K H20 H20 H 0 1 N N N 12.135 7.061 12.460 0.320 -4.162 -1.501 H20 Q9K 63 Q9K H21 H21 H 0 1 N N N 13.415 10.801 10.082 1.746 -2.490 1.066 H21 Q9K 64 Q9K H22 H22 H 0 1 N N N 13.287 9.010 10.060 1.491 -3.583 -0.315 H22 Q9K 65 Q9K H23 H23 H 0 1 N N N 15.948 10.368 10.458 2.908 -2.108 -1.739 H23 Q9K 66 Q9K H24 H24 H 0 1 N N N 17.743 8.473 9.494 4.865 -0.338 -1.508 H24 Q9K 67 Q9K H25 H25 H 0 1 N N N 16.503 9.069 6.914 5.645 -1.784 1.032 H25 Q9K 68 Q9K H26 H26 H 0 1 N N N 14.109 7.790 11.729 -0.571 -1.331 -2.211 H26 Q9K 69 Q9K H27 H27 H 0 1 N N N 14.328 8.465 13.379 1.057 -1.994 -2.496 H27 Q9K 70 Q9K H28 H28 H 0 1 N N N 14.544 9.864 7.810 3.939 -3.327 0.831 H28 Q9K 71 Q9K H29 H29 H 0 1 N N N 14.815 6.823 7.554 3.710 0.691 1.963 H29 Q9K 72 Q9K H30 H30 H 0 1 N N N 20.943 5.396 8.736 8.958 2.177 -1.593 H30 Q9K 73 Q9K H31 H31 H 0 1 N N N 14.092 11.868 12.329 -0.272 -1.685 1.456 H31 Q9K 74 Q9K H32 H32 H 0 1 N N N 13.985 10.785 13.757 -1.042 -2.822 0.324 H32 Q9K 75 Q9K H33 H33 H 0 1 N N N 18.915 2.353 6.479 6.914 4.202 2.832 H33 Q9K 76 Q9K H34 H34 H 0 1 N N N 17.381 2.389 7.037 8.313 4.776 2.098 H34 Q9K 77 Q9K H35 H35 H 0 1 N N N 15.492 6.835 12.539 -1.594 -1.738 4.432 H35 Q9K 78 Q9K H36 H36 H 0 1 N N N 19.436 7.310 16.791 -6.680 -2.412 3.560 H36 Q9K 79 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Q9K N9 C23 SING N N 1 Q9K N8 C22 SING Y N 2 Q9K N8 C21 DOUB Y N 3 Q9K C23 C22 DOUB Y N 4 Q9K C23 N10 SING Y N 5 Q9K C22 C25 SING Y N 6 Q9K C21 N7 SING Y N 7 Q9K N10 C24 DOUB Y N 8 Q9K C19 O5 SING N N 9 Q9K C19 C20 SING N N 10 Q9K C19 C18 SING N N 11 Q9K C25 N7 SING Y N 12 Q9K C25 N11 DOUB Y N 13 Q9K O6 C20 SING N N 14 Q9K N7 C18 SING N N 15 Q9K C20 C17 SING N N 16 Q9K C24 N11 SING Y N 17 Q9K C18 O4 SING N N 18 Q9K O4 C17 SING N N 19 Q9K C17 C16 SING N N 20 Q9K C16 N1 SING N N 21 Q9K N3 C8 SING N N 22 Q9K N1 C2 SING N N 23 Q9K N1 C3 SING N N 24 Q9K C8 N4 DOUB Y N 25 Q9K C8 C7 SING Y N 26 Q9K N4 C9 SING Y N 27 Q9K N2 C7 SING Y N 28 Q9K N2 C6 DOUB Y N 29 Q9K C7 C10 DOUB Y N 30 Q9K C2 C1 SING N N 31 Q9K C3 C4 SING N N 32 Q9K C9 N5 DOUB Y N 33 Q9K C1 C SING N N 34 Q9K C4 C5 TRIP N N 35 Q9K C6 C5 SING N N 36 Q9K C6 N6 SING Y N 37 Q9K O1 C13 SING N N 38 Q9K O C12 SING N N 39 Q9K O C11 SING N N 40 Q9K C10 N5 SING Y N 41 Q9K C10 N6 SING Y N 42 Q9K C13 C12 SING N N 43 Q9K N6 C11 SING N N 44 Q9K C12 C14 SING N N 45 Q9K C11 C15 SING N N 46 Q9K C N SING N N 47 Q9K C15 C14 SING N N 48 Q9K C15 O3 SING N N 49 Q9K C14 O2 SING N N 50 Q9K O3 H1 SING N N 51 Q9K C9 H3 SING N N 52 Q9K O5 H4 SING N N 53 Q9K O6 H5 SING N N 54 Q9K C11 H6 SING N N 55 Q9K C12 H7 SING N N 56 Q9K N3 H8 SING N N 57 Q9K N3 H9 SING N N 58 Q9K C13 H10 SING N N 59 Q9K C13 H11 SING N N 60 Q9K C14 H12 SING N N 61 Q9K C15 H13 SING N N 62 Q9K N H14 SING N N 63 Q9K N H15 SING N N 64 Q9K C H17 SING N N 65 Q9K C H18 SING N N 66 Q9K C1 H19 SING N N 67 Q9K C1 H20 SING N N 68 Q9K C16 H21 SING N N 69 Q9K C16 H22 SING N N 70 Q9K C17 H23 SING N N 71 Q9K C18 H24 SING N N 72 Q9K C19 H25 SING N N 73 Q9K C2 H26 SING N N 74 Q9K C2 H27 SING N N 75 Q9K C20 H28 SING N N 76 Q9K C21 H29 SING N N 77 Q9K C24 H30 SING N N 78 Q9K C3 H31 SING N N 79 Q9K C3 H32 SING N N 80 Q9K N9 H33 SING N N 81 Q9K N9 H34 SING N N 82 Q9K O1 H35 SING N N 83 Q9K O2 H36 SING N N 84 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Q9K InChI InChI 1.03 "InChI=1S/C26H34N12O7/c27-4-2-6-36(7-12-17(40)19(42)25(44-12)37-11-34-15-21(28)30-9-32-23(15)37)5-1-3-14-35-16-22(29)31-10-33-24(16)38(14)26-20(43)18(41)13(8-39)45-26/h9-13,17-20,25-26,39-43H,2,4-8,27H2,(H2,28,30,32)(H2,29,31,33)/t12-,13-,17-,18-,19-,20-,25-,26-/m1/s1" Q9K InChIKey InChI 1.03 WXECJKFATFMCJP-DQSURDJZSA-N Q9K SMILES_CANONICAL CACTVS 3.385 "NCCCN(CC#Cc1nc2c(N)ncnc2n1[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56" Q9K SMILES CACTVS 3.385 "NCCCN(CC#Cc1nc2c(N)ncnc2n1[CH]3O[CH](CO)[CH](O)[CH]3O)C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56" Q9K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CCCN)CC#Cc4nc5c(ncnc5n4[C@H]6[C@@H]([C@@H]([C@H](O6)CO)O)O)N)O)O)N" Q9K SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCCN)CC#Cc4nc5c(ncnc5n4C6C(C(C(O6)CO)O)O)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id Q9K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl-(3-azanylpropyl)amino]methyl]oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Q9K "Create component" 2020-05-28 PDBE Q9K "Initial release" 2021-05-26 RCSB ##