data_Q9Q # _chem_comp.id Q9Q _chem_comp.name "4-((1-(2-(2-(2-(2-hydroxyethoxy)ethoxy)ethoxy)ethyl)-1H-1,2,3-triazol-4-yl)methoxy)benzyl-a-L-thiofucoside" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H37 N3 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;(2~{S},3~{S},4~{R},5~{S},6~{S})-2-[[4-[[1-[2-[2-[2-(2-hydroxyethyloxy)ethoxy]ethoxy]ethyl]-1,2,3-triazol-4-yl]methoxy]p henyl]methylsulfanyl]-6-methyl-oxane-3,4,5-triol ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-05-28 _chem_comp.pdbx_modified_date 2021-04-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 543.630 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Q9Q _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6Z6C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Q9Q C19 C1 C 0 1 N N N 1.377 -16.520 13.992 5.390 -2.503 -0.592 C19 Q9Q 1 Q9Q N3 N1 N 0 1 Y N N 0.999 -16.769 12.581 4.115 -3.033 -0.102 N3 Q9Q 2 Q9Q N2 N2 N 0 1 Y N N 0.281 -15.783 11.960 3.966 -4.068 0.648 N2 Q9Q 3 Q9Q C18 C2 C 0 1 Y N N 1.096 -17.749 11.654 2.891 -2.513 -0.354 C18 Q9Q 4 Q9Q C17 C3 C 0 1 Y N N 0.470 -17.306 10.444 2.004 -3.308 0.288 C17 Q9Q 5 Q9Q N1 N3 N 0 1 Y N N -0.027 -16.048 10.646 2.719 -4.260 0.897 N1 Q9Q 6 Q9Q C16 C4 C 0 1 N N N 0.309 -18.015 9.092 0.505 -3.151 0.313 C16 Q9Q 7 Q9Q O6 O1 O 0 1 N N N -1.039 -18.377 8.992 0.133 -2.009 -0.461 O6 Q9Q 8 Q9Q C13 C5 C 0 1 Y N N -1.490 -19.166 7.988 -1.193 -1.724 -0.542 C13 Q9Q 9 Q9Q C12 C6 C 0 1 Y N N -2.811 -19.123 7.774 -1.625 -0.630 -1.277 C12 Q9Q 10 Q9Q C11 C7 C 0 1 Y N N -3.328 -19.912 6.813 -2.974 -0.343 -1.358 C11 Q9Q 11 Q9Q C14 C8 C 0 1 Y N N -0.708 -19.999 7.220 -2.118 -2.531 0.106 C14 Q9Q 12 Q9Q C15 C9 C 0 1 Y N N -1.238 -20.780 6.220 -3.466 -2.240 0.022 C15 Q9Q 13 Q9Q C10 C10 C 0 1 Y N N -2.592 -20.744 6.024 -3.893 -1.145 -0.707 C10 Q9Q 14 Q9Q C9 C11 C 0 1 N N N -3.377 -21.496 4.976 -5.364 -0.830 -0.797 C9 Q9Q 15 Q9Q S1 S1 S 0 1 N N N -4.428 -20.589 3.830 -5.830 0.276 0.564 S1 Q9Q 16 Q9Q C1 C12 C 0 1 N N S -3.201 -19.334 3.208 -7.604 0.536 0.289 C1 Q9Q 17 Q9Q O5 O2 O 0 1 N N N -3.113 -18.206 4.065 -7.798 1.235 -0.942 O5 Q9Q 18 Q9Q C5 C13 C 0 1 N N S -4.232 -17.348 3.995 -9.169 1.471 -1.270 C5 Q9Q 19 Q9Q C6 C14 C 0 1 N N N -4.019 -16.365 5.065 -9.908 0.135 -1.363 C6 Q9Q 20 Q9Q C4 C15 C 0 1 N N S -4.502 -16.770 2.622 -9.811 2.335 -0.181 C4 Q9Q 21 Q9Q O4 O3 O 0 1 N N N -3.351 -15.951 2.358 -11.196 2.525 -0.477 O4 Q9Q 22 Q9Q C3 C16 C 0 1 N N R -4.640 -17.952 1.666 -9.668 1.629 1.171 C3 Q9Q 23 Q9Q O3 O4 O 0 1 N N N -4.759 -17.560 0.351 -10.378 0.389 1.140 O3 Q9Q 24 Q9Q C2 C17 C 0 1 N N S -3.480 -18.900 1.809 -8.183 1.362 1.440 C2 Q9Q 25 Q9Q O2 O5 O 0 1 N N N -3.675 -20.028 0.954 -7.484 2.605 1.535 O2 Q9Q 26 Q9Q H1 H1 H 0 1 N N N 0.628 -16.629 14.790 5.849 -3.228 -1.264 H1 Q9Q 27 Q9Q H2 H2 H 0 1 N N N 2.360 -16.846 14.364 5.214 -1.571 -1.129 H2 Q9Q 28 Q9Q H4 H4 H 0 1 N N N 1.568 -18.709 11.802 2.667 -1.640 -0.949 H4 Q9Q 29 Q9Q H5 H5 H 0 1 N N N 0.947 -18.910 9.054 0.039 -4.043 -0.107 H5 Q9Q 30 Q9Q H6 H6 H 0 1 N N N 0.582 -17.335 8.271 0.171 -3.017 1.342 H6 Q9Q 31 Q9Q H7 H7 H 0 1 N N N -3.446 -18.472 8.357 -0.908 -0.003 -1.785 H7 Q9Q 32 Q9Q H8 H8 H 0 1 N N N -4.396 -19.883 6.657 -3.311 0.509 -1.930 H8 Q9Q 33 Q9Q H9 H9 H 0 1 N N N 0.355 -20.040 7.409 -1.785 -3.386 0.675 H9 Q9Q 34 Q9Q H10 H10 H 0 1 N N N -0.604 -21.404 5.607 -4.186 -2.867 0.525 H10 Q9Q 35 Q9Q H11 H11 H 0 1 N N N -4.026 -22.205 5.511 -5.574 -0.342 -1.749 H11 Q9Q 36 Q9Q H12 H12 H 0 1 N N N -2.648 -22.052 4.369 -5.939 -1.753 -0.728 H12 Q9Q 37 Q9Q H13 H13 H 0 1 N N N -2.238 -19.866 3.215 -8.110 -0.428 0.242 H13 Q9Q 38 Q9Q H14 H14 H 0 1 N N N -5.122 -17.934 4.268 -9.230 1.988 -2.227 H14 Q9Q 39 Q9Q H15 H15 H 0 1 N N N -3.833 -16.890 6.014 -9.711 -0.453 -0.467 H15 Q9Q 40 Q9Q H16 H16 H 0 1 N N N -3.151 -15.736 4.817 -10.979 0.318 -1.449 H16 Q9Q 41 Q9Q H17 H17 H 0 1 N N N -4.914 -15.733 5.165 -9.561 -0.412 -2.240 H17 Q9Q 42 Q9Q H18 H18 H 0 1 N N N -5.428 -16.176 2.630 -9.311 3.303 -0.141 H18 Q9Q 43 Q9Q H19 H19 H 0 1 N N N -3.321 -15.236 2.983 -11.361 2.964 -1.323 H19 Q9Q 44 Q9Q H20 H20 H 0 1 N N N -5.548 -18.500 1.959 -10.073 2.264 1.959 H20 Q9Q 45 Q9Q H21 H21 H 0 1 N N N -5.492 -16.962 0.263 -10.324 -0.115 1.964 H21 Q9Q 46 Q9Q H22 H22 H 0 1 N N N -2.587 -18.364 1.456 -8.076 0.811 2.374 H22 Q9Q 47 Q9Q H23 H23 H 0 1 N N N -2.942 -20.626 1.045 -6.537 2.511 1.705 H23 Q9Q 48 Q9Q C7 C18 C 0 1 N N N ? ? ? 6.323 -2.242 0.591 C7 Q9Q 49 Q9Q O1 O6 O 0 1 N N N ? ? ? 7.566 -1.726 0.113 O1 Q9Q 50 Q9Q C20 C20 C 0 1 N N N ? ? ? 8.515 -1.446 1.144 C20 Q9Q 51 Q9Q C21 C21 C 0 1 N N N ? ? ? 9.801 -0.901 0.520 C21 Q9Q 52 Q9Q O7 O7 O 0 1 N N N ? ? ? 9.534 0.358 -0.100 O7 Q9Q 53 Q9Q C22 C22 C 0 1 N N N ? ? ? 10.275 2.293 -1.345 C22 Q9Q 54 Q9Q C23 C23 C 0 1 N N N ? ? ? 10.676 0.956 -0.717 C23 Q9Q 55 Q9Q O8 O8 O 0 1 N N N ? ? ? 9.880 3.203 -0.316 O8 Q9Q 56 Q9Q C25 C25 C 0 1 N N N ? ? ? 9.484 4.489 -0.798 C25 Q9Q 57 Q9Q C26 C26 C 0 1 N N N ? ? ? 9.085 5.376 0.383 C26 Q9Q 58 Q9Q O9 O9 O 0 1 N N N ? ? ? 10.229 5.616 1.206 O9 Q9Q 59 Q9Q H3 H3 H 0 1 N N N ? ? ? 5.863 -1.517 1.263 H3 Q9Q 60 Q9Q H24 H24 H 0 1 N N N ? ? ? 6.498 -3.174 1.128 H24 Q9Q 61 Q9Q H25 H25 H 0 1 N N N ? ? ? 8.100 -0.704 1.827 H25 Q9Q 62 Q9Q H26 H26 H 0 1 N N N ? ? ? 8.736 -2.361 1.693 H26 Q9Q 63 Q9Q H27 H27 H 0 1 N N N ? ? ? 10.555 -0.771 1.296 H27 Q9Q 64 Q9Q H28 H28 H 0 1 N N N ? ? ? 10.168 -1.604 -0.228 H28 Q9Q 65 Q9Q H29 H29 H 0 1 N N N ? ? ? 11.123 2.706 -1.891 H29 Q9Q 66 Q9Q H30 H30 H 0 1 N N N ? ? ? 9.442 2.136 -2.031 H30 Q9Q 67 Q9Q H31 H31 H 0 1 N N N ? ? ? 11.448 1.125 0.034 H31 Q9Q 68 Q9Q H32 H32 H 0 1 N N N ? ? ? 11.060 0.292 -1.491 H32 Q9Q 69 Q9Q H33 H33 H 0 1 N N N ? ? ? 10.316 4.948 -1.333 H33 Q9Q 70 Q9Q H34 H34 H 0 1 N N N ? ? ? 8.635 4.378 -1.473 H34 Q9Q 71 Q9Q H35 H35 H 0 1 N N N ? ? ? 8.700 6.325 0.010 H35 Q9Q 72 Q9Q H36 H36 H 0 1 N N N ? ? ? 8.315 4.875 0.969 H36 Q9Q 73 Q9Q H37 H37 H 0 1 N N N ? ? ? 10.049 6.173 1.975 H37 Q9Q 74 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Q9Q O3 C3 SING N N 1 Q9Q O2 C2 SING N N 2 Q9Q C3 C2 SING N N 3 Q9Q C3 C4 SING N N 4 Q9Q C2 C1 SING N N 5 Q9Q O4 C4 SING N N 6 Q9Q C4 C5 SING N N 7 Q9Q C1 S1 SING N N 8 Q9Q C1 O5 SING N N 9 Q9Q S1 C9 SING N N 10 Q9Q C5 O5 SING N N 11 Q9Q C5 C6 SING N N 12 Q9Q C9 C10 SING N N 13 Q9Q C10 C15 DOUB Y N 14 Q9Q C10 C11 SING Y N 15 Q9Q C15 C14 SING Y N 16 Q9Q C11 C12 DOUB Y N 17 Q9Q C14 C13 DOUB Y N 18 Q9Q C12 C13 SING Y N 19 Q9Q C13 O6 SING N N 20 Q9Q O6 C16 SING N N 21 Q9Q C16 C17 SING N N 22 Q9Q C17 N1 SING Y N 23 Q9Q C17 C18 DOUB Y N 24 Q9Q N1 N2 DOUB Y N 25 Q9Q C18 N3 SING Y N 26 Q9Q N2 N3 SING Y N 27 Q9Q N3 C19 SING N N 28 Q9Q C19 H1 SING N N 29 Q9Q C19 H2 SING N N 30 Q9Q C18 H4 SING N N 31 Q9Q C16 H5 SING N N 32 Q9Q C16 H6 SING N N 33 Q9Q C12 H7 SING N N 34 Q9Q C11 H8 SING N N 35 Q9Q C14 H9 SING N N 36 Q9Q C15 H10 SING N N 37 Q9Q C9 H11 SING N N 38 Q9Q C9 H12 SING N N 39 Q9Q C1 H13 SING N N 40 Q9Q C5 H14 SING N N 41 Q9Q C6 H15 SING N N 42 Q9Q C6 H16 SING N N 43 Q9Q C6 H17 SING N N 44 Q9Q C4 H18 SING N N 45 Q9Q O4 H19 SING N N 46 Q9Q C3 H20 SING N N 47 Q9Q O3 H21 SING N N 48 Q9Q C2 H22 SING N N 49 Q9Q O2 H23 SING N N 50 Q9Q C7 C19 SING N N 51 Q9Q O1 C7 SING N N 52 Q9Q O1 C20 SING N N 53 Q9Q C21 C20 SING N N 54 Q9Q O7 C21 SING N N 55 Q9Q C23 C22 SING N N 56 Q9Q C23 O7 SING N N 57 Q9Q O8 C22 SING N N 58 Q9Q C25 O8 SING N N 59 Q9Q C25 C26 SING N N 60 Q9Q O9 C26 SING N N 61 Q9Q C7 H3 SING N N 62 Q9Q C7 H24 SING N N 63 Q9Q C20 H25 SING N N 64 Q9Q C20 H26 SING N N 65 Q9Q C21 H27 SING N N 66 Q9Q C21 H28 SING N N 67 Q9Q C22 H29 SING N N 68 Q9Q C22 H30 SING N N 69 Q9Q C23 H31 SING N N 70 Q9Q C23 H32 SING N N 71 Q9Q C25 H33 SING N N 72 Q9Q C25 H34 SING N N 73 Q9Q C26 H35 SING N N 74 Q9Q C26 H36 SING N N 75 Q9Q O9 H37 SING N N 76 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Q9Q InChI InChI 1.03 "InChI=1S/C24H37N3O9S/c1-17-21(29)22(30)23(31)24(36-17)37-16-18-2-4-20(5-3-18)35-15-19-14-27(26-25-19)6-8-32-10-12-34-13-11-33-9-7-28/h2-5,14,17,21-24,28-31H,6-13,15-16H2,1H3/t17-,21+,22+,23-,24-/m0/s1" Q9Q InChIKey InChI 1.03 YKPIHJOKBVPCNG-BQEPTVRSSA-N Q9Q SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[C@@H](SCc2ccc(OCc3cn(CCOCCOCCOCCO)nn3)cc2)[C@@H](O)[C@H](O)[C@@H]1O" Q9Q SMILES CACTVS 3.385 "C[CH]1O[CH](SCc2ccc(OCc3cn(CCOCCOCCOCCO)nn3)cc2)[CH](O)[CH](O)[CH]1O" Q9Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)SCc2ccc(cc2)OCc3cn(nn3)CCOCCOCCOCCO)O)O)O" Q9Q SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)SCc2ccc(cc2)OCc3cn(nn3)CCOCCOCCOCCO)O)O)O" # _pdbx_chem_comp_identifier.comp_id Q9Q _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{S},4~{R},5~{S},6~{S})-2-[[4-[[1-[2-[2-[2-(2-hydroxyethyloxy)ethoxy]ethoxy]ethyl]-1,2,3-triazol-4-yl]methoxy]phenyl]methylsulfanyl]-6-methyl-oxane-3,4,5-triol" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id Q9Q _pdbx_chem_comp_synonyms.name "(2~{S},3~{S},4~{R},5~{S},6~{S})-2-[[4-[[1-[2-[2-[2-(2-hydroxyethyloxy)ethoxy]ethoxy]ethyl]-1,2,3-triazol-4-yl]methoxy]phenyl]methylsulfanyl]-6-methyl-oxane-3,4,5-triol" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Q9Q "Create component" 2020-05-28 PDBE Q9Q "Modify synonyms" 2020-06-05 PDBE Q9Q "Initial release" 2021-04-07 RCSB ##