data_QBD # _chem_comp.id QBD _chem_comp.name "4-(6-{3-[2-(3-carboxypropanoyl)-6-methoxy-1-benzothiophen-4-yl]propyl}-5-methoxy-1-benzothiophen-2-yl)-4-oxobutanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H28 O8 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-10-10 _chem_comp.pdbx_modified_date 2020-08-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 568.658 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QBD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6UKY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QBD O5 O1 O 0 1 N N N -21.671 -16.795 -2.490 9.877 3.680 1.206 O5 QBD 1 QBD C23 C1 C 0 1 N N N -20.762 -15.860 -2.405 8.715 3.177 0.762 C23 QBD 2 QBD O6 O2 O 0 1 N N N -19.751 -15.854 -3.062 7.945 3.882 0.154 O6 QBD 3 QBD C22 C2 C 0 1 N N N -21.095 -14.801 -1.402 8.370 1.733 1.022 C22 QBD 4 QBD C21 C3 C 0 1 N N N -21.530 -15.364 -0.063 7.001 1.418 0.414 C21 QBD 5 QBD C20 C4 C 0 1 N N N -20.526 -16.320 0.517 6.656 -0.025 0.674 C20 QBD 6 QBD O4 O3 O 0 1 N N N -19.336 -16.017 0.638 7.429 -0.734 1.285 O4 QBD 7 QBD C19 C5 C 0 1 Y N N -21.000 -17.642 0.876 5.428 -0.556 0.205 C19 QBD 8 QBD S1 S1 S 0 1 Y N N -19.845 -18.779 1.519 4.223 0.354 -0.689 S1 QBD 9 QBD C24 C6 C 0 1 Y N N -22.218 -18.214 0.669 5.029 -1.826 0.378 C24 QBD 10 QBD C25 C7 C 0 1 Y N N -22.287 -19.603 1.029 3.777 -2.145 -0.167 C25 QBD 11 QBD C18 C8 C 0 1 Y N N -21.043 -20.040 1.514 3.171 -1.053 -0.804 C18 QBD 12 QBD C17 C9 C 0 1 Y N N -20.853 -21.345 1.942 1.916 -1.201 -1.402 C17 QBD 13 QBD C26 C10 C 0 1 Y N N -23.336 -20.503 0.987 3.093 -3.385 -0.149 C26 QBD 14 QBD C27 C11 C 0 1 Y N N -23.160 -21.803 1.426 1.861 -3.506 -0.743 C27 QBD 15 QBD O7 O4 O 0 1 N N N -24.134 -22.755 1.358 1.214 -4.702 -0.718 O7 QBD 16 QBD C28 C12 C 0 1 N N N -25.183 -22.552 0.411 1.875 -5.784 -0.059 C28 QBD 17 QBD C C13 C 0 1 Y N N -21.930 -22.234 1.947 1.268 -2.411 -1.370 C QBD 18 QBD C1 C14 C 0 1 N N N -21.684 -23.683 2.296 -0.085 -2.557 -2.018 C1 QBD 19 QBD C2 C15 C 0 1 N N N -20.476 -24.222 1.532 -1.178 -2.357 -0.966 C2 QBD 20 QBD C3 C16 C 0 1 N N N -20.627 -24.369 0.010 -2.551 -2.506 -1.623 C3 QBD 21 QBD C4 C17 C 0 1 Y N N -20.876 -23.093 -0.757 -3.628 -2.309 -0.587 C4 QBD 22 QBD C16 C18 C 0 1 Y N N -19.866 -22.135 -0.947 -4.068 -0.999 -0.272 C16 QBD 23 QBD C9 C19 C 0 1 Y N N -20.171 -20.976 -1.676 -5.071 -0.841 0.695 C9 QBD 24 QBD C8 C20 C 0 1 Y N N -21.424 -20.743 -2.228 -5.614 -1.964 1.325 C8 QBD 25 QBD C6 C21 C 0 1 Y N N -22.382 -21.730 -2.080 -5.165 -3.227 0.998 C6 QBD 26 QBD O O5 O 0 1 N N N -23.619 -21.480 -2.610 -5.695 -4.315 1.613 O QBD 27 QBD C7 C22 C 0 1 N N N -23.920 -20.130 -2.960 -6.714 -4.079 2.587 C7 QBD 28 QBD C5 C23 C 0 1 Y N N -22.122 -22.885 -1.354 -4.172 -3.387 0.032 C5 QBD 29 QBD C15 C24 C 0 1 Y N N -18.506 -22.118 -0.489 -3.635 0.224 -0.804 C15 QBD 30 QBD C10 C25 C 0 1 Y N N -17.820 -21.005 -0.879 -4.240 1.316 -0.310 C10 QBD 31 QBD S S2 S 0 1 Y N N -18.783 -19.942 -1.831 -5.433 0.870 0.897 S QBD 32 QBD C11 C26 C 0 1 N N N -16.478 -20.551 -0.523 -3.953 2.645 -0.707 C11 QBD 33 QBD O1 O6 O 0 1 N N N -16.152 -19.368 -0.667 -3.107 2.856 -1.551 O1 QBD 34 QBD C12 C27 C 0 1 N N N -15.528 -21.561 0.057 -4.697 3.795 -0.081 C12 QBD 35 QBD C13 C28 C 0 1 N N N -14.871 -21.075 1.334 -4.200 5.112 -0.682 C13 QBD 36 QBD C14 C29 C 0 1 N N N -15.862 -20.760 2.410 -4.945 6.263 -0.056 C14 QBD 37 QBD O2 O7 O 0 1 N N N -16.773 -21.684 2.549 -5.787 6.052 0.785 O2 QBD 38 QBD O3 O8 O 0 1 N N N -15.835 -19.751 3.068 -4.673 7.522 -0.432 O3 QBD 39 QBD H1 H1 H 0 1 N N N -21.403 -17.440 -3.134 10.054 4.611 1.016 H1 QBD 40 QBD H2 H2 H 0 1 N N N -20.204 -14.175 -1.246 9.125 1.092 0.567 H2 QBD 41 QBD H3 H3 H 0 1 N N N -21.912 -14.183 -1.804 8.340 1.554 2.096 H3 QBD 42 QBD H4 H4 H 0 1 N N N -21.670 -14.530 0.641 6.246 2.060 0.869 H4 QBD 43 QBD H5 H5 H 0 1 N N N -22.484 -15.894 -0.197 7.030 1.597 -0.660 H5 QBD 44 QBD H6 H6 H 0 1 N N N -23.060 -17.670 0.268 5.632 -2.553 0.901 H6 QBD 45 QBD H7 H7 H 0 1 N N N -19.877 -21.672 2.270 1.452 -0.357 -1.891 H7 QBD 46 QBD H8 H8 H 0 1 N N N -24.298 -20.189 0.609 3.543 -4.240 0.335 H8 QBD 47 QBD H9 H9 H 0 1 N N N -25.893 -23.390 0.464 1.252 -6.677 -0.112 H9 QBD 48 QBD H10 H10 H 0 1 N N N -25.707 -21.613 0.641 2.830 -5.978 -0.547 H10 QBD 49 QBD H11 H11 H 0 1 N N N -24.757 -22.496 -0.602 2.047 -5.523 0.985 H11 QBD 50 QBD H12 H12 H 0 1 N N N -22.573 -24.275 2.031 -0.194 -1.809 -2.803 H12 QBD 51 QBD H13 H13 H 0 1 N N N -21.496 -23.768 3.376 -0.175 -3.554 -2.450 H13 QBD 52 QBD H14 H14 H 0 1 N N N -20.241 -25.216 1.940 -1.068 -3.106 -0.181 H14 QBD 53 QBD H15 H15 H 0 1 N N N -19.633 -23.540 1.718 -1.088 -1.361 -0.533 H15 QBD 54 QBD H16 H16 H 0 1 N N N -21.472 -25.046 -0.180 -2.661 -1.757 -2.408 H16 QBD 55 QBD H17 H17 H 0 1 N N N -19.702 -24.820 -0.378 -2.641 -3.502 -2.056 H17 QBD 56 QBD H18 H18 H 0 1 N N N -21.642 -19.825 -2.753 -6.383 -1.842 2.074 H18 QBD 57 QBD H19 H19 H 0 1 N N N -24.939 -20.076 -3.371 -7.555 -3.569 2.117 H19 QBD 58 QBD H20 H20 H 0 1 N N N -23.851 -19.495 -2.064 -7.050 -5.030 3.000 H20 QBD 59 QBD H21 H21 H 0 1 N N N -23.201 -19.778 -3.715 -6.313 -3.456 3.388 H21 QBD 60 QBD H22 H22 H 0 1 N N N -22.894 -23.633 -1.249 -3.825 -4.379 -0.219 H22 QBD 61 QBD H23 H23 H 0 1 N N N -18.069 -22.907 0.105 -2.867 0.283 -1.560 H23 QBD 62 QBD H24 H24 H 0 1 N N N -16.085 -22.484 0.276 -5.764 3.687 -0.276 H24 QBD 63 QBD H25 H25 H 0 1 N N N -14.744 -21.774 -0.684 -4.523 3.799 0.995 H25 QBD 64 QBD H26 H26 H 0 1 N N N -14.191 -21.858 1.700 -3.134 5.220 -0.487 H26 QBD 65 QBD H27 H27 H 0 1 N N N -14.295 -20.165 1.109 -4.375 5.109 -1.758 H27 QBD 66 QBD H28 H28 H 0 1 N N N -16.563 -19.751 3.678 -5.177 8.227 -0.002 H28 QBD 67 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QBD O6 C23 DOUB N N 1 QBD C7 O SING N N 2 QBD O C6 SING N N 3 QBD O5 C23 SING N N 4 QBD C23 C22 SING N N 5 QBD C8 C6 DOUB Y N 6 QBD C8 C9 SING Y N 7 QBD C6 C5 SING Y N 8 QBD S C9 SING Y N 9 QBD S C10 SING Y N 10 QBD C9 C16 DOUB Y N 11 QBD C22 C21 SING N N 12 QBD C5 C4 DOUB Y N 13 QBD C16 C4 SING Y N 14 QBD C16 C15 SING Y N 15 QBD C10 C11 SING N N 16 QBD C10 C15 DOUB Y N 17 QBD C4 C3 SING N N 18 QBD O1 C11 DOUB N N 19 QBD C11 C12 SING N N 20 QBD C21 C20 SING N N 21 QBD C3 C2 SING N N 22 QBD C12 C13 SING N N 23 QBD C28 O7 SING N N 24 QBD C20 O4 DOUB N N 25 QBD C20 C19 SING N N 26 QBD C24 C19 DOUB Y N 27 QBD C24 C25 SING Y N 28 QBD C19 S1 SING Y N 29 QBD C26 C25 DOUB Y N 30 QBD C26 C27 SING Y N 31 QBD C25 C18 SING Y N 32 QBD C13 C14 SING N N 33 QBD O7 C27 SING N N 34 QBD C27 C DOUB Y N 35 QBD C18 S1 SING Y N 36 QBD C18 C17 DOUB Y N 37 QBD C2 C1 SING N N 38 QBD C17 C SING Y N 39 QBD C C1 SING N N 40 QBD C14 O2 DOUB N N 41 QBD C14 O3 SING N N 42 QBD O5 H1 SING N N 43 QBD C22 H2 SING N N 44 QBD C22 H3 SING N N 45 QBD C21 H4 SING N N 46 QBD C21 H5 SING N N 47 QBD C24 H6 SING N N 48 QBD C17 H7 SING N N 49 QBD C26 H8 SING N N 50 QBD C28 H9 SING N N 51 QBD C28 H10 SING N N 52 QBD C28 H11 SING N N 53 QBD C1 H12 SING N N 54 QBD C1 H13 SING N N 55 QBD C2 H14 SING N N 56 QBD C2 H15 SING N N 57 QBD C3 H16 SING N N 58 QBD C3 H17 SING N N 59 QBD C8 H18 SING N N 60 QBD C7 H19 SING N N 61 QBD C7 H20 SING N N 62 QBD C7 H21 SING N N 63 QBD C5 H22 SING N N 64 QBD C15 H23 SING N N 65 QBD C12 H24 SING N N 66 QBD C12 H25 SING N N 67 QBD C13 H26 SING N N 68 QBD C13 H27 SING N N 69 QBD O3 H28 SING N N 70 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QBD SMILES ACDLabs 12.01 "OC(CCC(=O)c1sc2c(c1)cc(c(c2)CCCc4c3cc(C(CCC(=O)O)=O)sc3cc(c4)OC)OC)=O" QBD InChI InChI 1.03 "InChI=1S/C29H28O8S2/c1-36-19-10-16(20-15-27(39-25(20)14-19)22(31)7-9-29(34)35)4-3-5-17-12-24-18(11-23(17)37-2)13-26(38-24)21(30)6-8-28(32)33/h10-15H,3-9H2,1-2H3,(H,32,33)(H,34,35)" QBD InChIKey InChI 1.03 FAUOOVCIHNKOFE-UHFFFAOYSA-N QBD SMILES_CANONICAL CACTVS 3.385 "COc1cc(CCCc2cc3sc(cc3cc2OC)C(=O)CCC(O)=O)c4cc(sc4c1)C(=O)CCC(O)=O" QBD SMILES CACTVS 3.385 "COc1cc(CCCc2cc3sc(cc3cc2OC)C(=O)CCC(O)=O)c4cc(sc4c1)C(=O)CCC(O)=O" QBD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc(c2cc(sc2c1)C(=O)CCC(=O)O)CCCc3cc4c(cc3OC)cc(s4)C(=O)CCC(=O)O" QBD SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc(c2cc(sc2c1)C(=O)CCC(=O)O)CCCc3cc4c(cc3OC)cc(s4)C(=O)CCC(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier QBD "SYSTEMATIC NAME" ACDLabs 12.01 "4-(6-{3-[2-(3-carboxypropanoyl)-6-methoxy-1-benzothiophen-4-yl]propyl}-5-methoxy-1-benzothiophen-2-yl)-4-oxobutanoic acid" QBD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[5-methoxy-6-[3-[6-methoxy-2-(4-oxidanyl-4-oxidanylidene-butanoyl)-1-benzothiophen-4-yl]propyl]-1-benzothiophen-2-yl]-4-oxidanylidene-butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QBD "Create component" 2019-10-10 RCSB QBD "Initial release" 2020-08-19 RCSB ##