data_QBU # _chem_comp.id QBU _chem_comp.name "N-(5-phenylpentyl)adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H27 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-06 _chem_comp.pdbx_modified_date 2023-01-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 413.470 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QBU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CY1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QBU C18 C1 C 0 1 Y N N -31.840 2.226 2.954 -10.714 -1.618 0.542 C18 QBU 1 QBU C17 C2 C 0 1 Y N N -30.564 2.698 3.175 -10.132 -0.924 1.586 C17 QBU 2 QBU C16 C3 C 0 1 Y N N -29.832 2.251 4.263 -9.034 -0.117 1.352 C16 QBU 3 QBU C15 C4 C 0 1 Y N N -30.370 1.323 5.146 -8.519 -0.004 0.075 C15 QBU 4 QBU C14 C5 C 0 1 N N N -29.583 0.851 6.345 -7.322 0.877 -0.180 C14 QBU 5 QBU C13 C6 C 0 1 N N N -29.902 1.639 7.612 -6.041 0.058 -0.012 C13 QBU 6 QBU C12 C7 C 0 1 N N N -28.985 1.326 8.779 -4.826 0.951 -0.270 C12 QBU 7 QBU C11 C8 C 0 1 N N N -29.179 2.261 9.959 -3.545 0.132 -0.102 C11 QBU 8 QBU C10 C9 C 0 1 N N N -28.327 1.910 11.162 -2.331 1.026 -0.361 C10 QBU 9 QBU C9 C10 C 0 1 Y N N -29.521 2.779 13.174 0.130 0.840 -0.385 C9 QBU 10 QBU N2 N1 N 0 1 Y N N -31.453 2.731 15.227 2.529 2.053 -0.769 N2 QBU 11 QBU C8 C11 C 0 1 Y N N -30.473 3.629 15.092 1.392 2.703 -0.899 C8 QBU 12 QBU C7 C12 C 0 1 Y N N -31.421 1.827 14.247 2.539 0.765 -0.441 C7 QBU 13 QBU N1 N2 N 0 1 Y N N -30.798 0.699 12.361 1.607 -1.181 0.083 N1 QBU 14 QBU C1 C13 C 0 1 N N R -34.604 -0.132 14.231 5.517 0.597 0.998 C1 QBU 15 QBU C5 C14 C 0 1 Y N N -31.840 0.132 12.925 2.897 -1.346 0.084 C5 QBU 16 QBU C6 C15 C 0 1 Y N N -30.521 1.771 13.193 1.317 0.104 -0.234 C6 QBU 17 QBU C4 C16 C 0 1 N N R -33.342 0.330 14.954 4.963 0.043 -0.333 C4 QBU 18 QBU C3 C17 C 0 1 N N N -33.571 -3.069 15.372 7.712 -2.287 0.219 C3 QBU 19 QBU O3 O1 O 0 1 N N N -32.888 -0.779 15.706 5.647 -1.215 -0.523 O3 QBU 20 QBU C2 C18 C 0 1 N N R -33.970 -1.714 15.911 7.012 -0.970 -0.118 C2 QBU 21 QBU O2 O2 O 0 1 N N N -34.339 -4.106 15.970 7.847 -3.073 -0.967 O2 QBU 22 QBU N N3 N 0 1 Y N N -32.261 0.753 14.067 3.517 -0.174 -0.232 N QBU 23 QBU C C19 C 0 1 N N S -35.207 -1.089 15.263 6.897 -0.084 1.142 C QBU 24 QBU O O3 O 0 1 N N N -35.993 -0.402 16.231 7.938 0.894 1.164 O QBU 25 QBU C19 C20 C 0 1 Y N N -32.384 1.302 3.821 -10.199 -1.504 -0.736 C19 QBU 26 QBU C20 C21 C 0 1 Y N N -31.655 0.852 4.909 -9.100 -0.698 -0.969 C20 QBU 27 QBU N3 N4 N 0 1 Y N N -29.530 3.705 14.148 0.219 2.125 -0.715 N3 QBU 28 QBU N4 N5 N 0 1 N N N -28.536 2.845 12.255 -1.104 0.242 -0.199 N4 QBU 29 QBU O1 O4 O 0 1 N N N -35.448 0.985 13.983 5.665 2.017 0.925 O1 QBU 30 QBU H1 H1 H 0 1 N N N -32.410 2.578 2.107 -11.569 -2.252 0.725 H1 QBU 31 QBU H2 H2 H 0 1 N N N -30.133 3.420 2.497 -10.534 -1.012 2.584 H2 QBU 32 QBU H3 H3 H 0 1 N N N -28.833 2.628 4.426 -8.579 0.426 2.168 H3 QBU 33 QBU H4 H4 H 0 1 N N N -29.816 -0.209 6.523 -7.371 1.271 -1.195 H4 QBU 34 QBU H5 H5 H 0 1 N N N -28.511 0.959 6.125 -7.321 1.703 0.531 H5 QBU 35 QBU H6 H6 H 0 1 N N N -29.817 2.712 7.383 -5.992 -0.337 1.003 H6 QBU 36 QBU H7 H7 H 0 1 N N N -30.935 1.409 7.912 -6.042 -0.769 -0.723 H7 QBU 37 QBU H8 H8 H 0 1 N N N -29.182 0.297 9.112 -4.875 1.345 -1.285 H8 QBU 38 QBU H9 H9 H 0 1 N N N -27.943 1.407 8.436 -4.825 1.778 0.441 H9 QBU 39 QBU H10 H10 H 0 1 N N N -28.923 3.282 9.639 -3.497 -0.262 0.913 H10 QBU 40 QBU H11 H11 H 0 1 N N N -30.236 2.225 10.260 -3.546 -0.694 -0.813 H11 QBU 41 QBU H12 H12 H 0 1 N N N -28.590 0.898 11.503 -2.379 1.420 -1.376 H12 QBU 42 QBU H13 H13 H 0 1 N N N -27.267 1.935 10.869 -2.330 1.852 0.350 H13 QBU 43 QBU H14 H14 H 0 1 N N N -30.438 4.398 15.849 1.419 3.750 -1.166 H14 QBU 44 QBU H15 H15 H 0 1 N N N -34.346 -0.672 13.308 4.866 0.322 1.827 H15 QBU 45 QBU H16 H16 H 0 1 N N N -32.321 -0.747 12.522 3.403 -2.275 0.304 H16 QBU 46 QBU H17 H17 H 0 1 N N N -33.608 1.159 15.627 5.188 0.725 -1.152 H17 QBU 47 QBU H18 H18 H 0 1 N N N -33.733 -3.084 14.284 8.700 -2.079 0.631 H18 QBU 48 QBU H19 H19 H 0 1 N N N -32.506 -3.241 15.587 7.121 -2.836 0.953 H19 QBU 49 QBU H20 H20 H 0 1 N N N -34.163 -1.814 16.989 7.553 -0.444 -0.905 H20 QBU 50 QBU H21 H21 H 0 1 N N N -34.070 -4.945 15.615 8.283 -3.924 -0.828 H21 QBU 51 QBU H22 H22 H 0 1 N N N -35.793 -1.867 14.751 6.927 -0.696 2.043 H22 QBU 52 QBU H23 H23 H 0 1 N N N -36.349 -1.027 16.852 8.826 0.521 1.253 H23 QBU 53 QBU H24 H24 H 0 1 N N N -33.383 0.928 3.651 -10.654 -2.046 -1.552 H24 QBU 54 QBU H25 H25 H 0 1 N N N -32.090 0.127 5.581 -8.698 -0.609 -1.968 H25 QBU 55 QBU H26 H26 H 0 1 N N N -27.685 2.830 12.780 -1.156 -0.698 0.037 H26 QBU 56 QBU H27 H27 H 0 1 N N N -36.233 0.696 13.533 6.010 2.418 1.735 H27 QBU 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QBU C18 C17 DOUB Y N 1 QBU C18 C19 SING Y N 2 QBU C17 C16 SING Y N 3 QBU C19 C20 DOUB Y N 4 QBU C16 C15 DOUB Y N 5 QBU C20 C15 SING Y N 6 QBU C15 C14 SING N N 7 QBU C14 C13 SING N N 8 QBU C13 C12 SING N N 9 QBU C12 C11 SING N N 10 QBU C11 C10 SING N N 11 QBU C10 N4 SING N N 12 QBU N4 C9 SING N N 13 QBU N1 C5 DOUB Y N 14 QBU N1 C6 SING Y N 15 QBU C5 N SING Y N 16 QBU C9 C6 DOUB Y N 17 QBU C9 N3 SING Y N 18 QBU C6 C7 SING Y N 19 QBU O1 C1 SING N N 20 QBU N C7 SING Y N 21 QBU N C4 SING N N 22 QBU N3 C8 DOUB Y N 23 QBU C1 C4 SING N N 24 QBU C1 C SING N N 25 QBU C7 N2 DOUB Y N 26 QBU C4 O3 SING N N 27 QBU C8 N2 SING Y N 28 QBU C C2 SING N N 29 QBU C O SING N N 30 QBU C3 C2 SING N N 31 QBU C3 O2 SING N N 32 QBU O3 C2 SING N N 33 QBU C18 H1 SING N N 34 QBU C17 H2 SING N N 35 QBU C16 H3 SING N N 36 QBU C14 H4 SING N N 37 QBU C14 H5 SING N N 38 QBU C13 H6 SING N N 39 QBU C13 H7 SING N N 40 QBU C12 H8 SING N N 41 QBU C12 H9 SING N N 42 QBU C11 H10 SING N N 43 QBU C11 H11 SING N N 44 QBU C10 H12 SING N N 45 QBU C10 H13 SING N N 46 QBU C8 H14 SING N N 47 QBU C1 H15 SING N N 48 QBU C5 H16 SING N N 49 QBU C4 H17 SING N N 50 QBU C3 H18 SING N N 51 QBU C3 H19 SING N N 52 QBU C2 H20 SING N N 53 QBU O2 H21 SING N N 54 QBU C H22 SING N N 55 QBU O H23 SING N N 56 QBU C19 H24 SING N N 57 QBU C20 H25 SING N N 58 QBU N4 H26 SING N N 59 QBU O1 H27 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QBU SMILES ACDLabs 12.01 "OCC1OC(n2cnc3c(NCCCCCc4ccccc4)ncnc32)C(O)C1O" QBU InChI InChI 1.03 "InChI=1S/C21H27N5O4/c27-11-15-17(28)18(29)21(30-15)26-13-25-16-19(23-12-24-20(16)26)22-10-6-2-5-9-14-7-3-1-4-8-14/h1,3-4,7-8,12-13,15,17-18,21,27-29H,2,5-6,9-11H2,(H,22,23,24)/t15-,17-,18-,21-/m1/s1" QBU InChIKey InChI 1.03 OWDHJJGXMJRIBB-QTQZEZTPSA-N QBU SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(NCCCCCc4ccccc4)ncnc23" QBU SMILES CACTVS 3.385 "OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(NCCCCCc4ccccc4)ncnc23" QBU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCCCCNc2c3c(ncn2)n(cn3)[C@H]4[C@@H]([C@@H]([C@H](O4)CO)O)O" QBU SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCCCCNc2c3c(ncn2)n(cn3)C4C(C(C(O4)CO)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier QBU "SYSTEMATIC NAME" ACDLabs 12.01 "N-(5-phenylpentyl)adenosine" QBU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{S},4~{R},5~{R})-2-(hydroxymethyl)-5-[6-(5-phenylpentylamino)purin-9-yl]oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QBU "Create component" 2022-06-06 RCSB QBU "Initial release" 2023-01-11 RCSB #