data_QC4 # _chem_comp.id QC4 _chem_comp.name "{(4Z)-2-[(1R,2R)-1-amino-2-hydroxypropyl]-5-oxo-4-[(2,3,5-trifluoro-4-hydroxyphenyl)methylidene]-4,5-dihydro-1H-imidazol-1-yl}acetic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C15 H14 F3 N3 O5" _chem_comp.mon_nstd_parent_comp_id "THR, TYR, GLY" _chem_comp.pdbx_synonyms "PEPTIDE DERIVED CHROMOPHORE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-10-11 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 373.284 _chem_comp.one_letter_code TYG _chem_comp.three_letter_code QC4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6UN5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QC4 N1 N1 N 0 1 N N N Y Y N 8.484 8.224 1.825 1.821 2.586 -1.514 N1 QC4 1 QC4 CA1 CA1 C 0 1 N N R Y N N 7.358 8.175 2.691 2.623 1.629 -0.741 CA1 QC4 2 QC4 CB1 CB1 C 0 1 N N R N N N 7.763 8.484 4.158 2.828 2.164 0.678 CB1 QC4 3 QC4 CG1 CG1 C 0 1 N N N N N N 8.880 7.560 4.615 3.444 3.563 0.611 CG1 QC4 4 QC4 OG1 OG1 O 0 1 N N N N N N 8.267 9.795 4.307 1.568 2.230 1.349 OG1 QC4 5 QC4 C1 C1 C 0 1 N N N Y N N 6.414 9.163 2.156 1.905 0.306 -0.679 C1 QC4 6 QC4 N2 N2 N 0 1 N N N Y N N 6.224 10.357 2.642 0.617 0.175 -0.612 N2 QC4 7 QC4 N3 N3 N 0 1 N N N Y N N 5.613 8.880 1.013 2.527 -0.911 -0.693 N3 QC4 8 QC4 C2 C2 C 0 1 N N N Y N N 4.838 10.046 0.774 1.581 -1.874 -0.631 C2 QC4 9 QC4 O2 O2 O 0 1 N N N Y N N 4.033 10.134 -0.147 1.753 -3.080 -0.621 O2 QC4 10 QC4 CA2 CA2 C 0 1 N N N Y N N 5.264 10.968 1.860 0.299 -1.154 -0.571 CA2 QC4 11 QC4 CA3 CA3 C 0 1 N N N Y N N 5.605 7.663 0.238 3.973 -1.133 -0.763 CA3 QC4 12 QC4 C3 C3 C 0 1 N N N Y N Y 4.544 6.709 0.426 4.542 -1.188 0.632 C3 QC4 13 QC4 O3 O3 O 0 1 N N N Y N Y 4.148 5.988 -0.507 3.813 -1.056 1.587 O3 QC4 14 QC4 CB2 CB2 C 0 1 N N N N N N 4.774 12.247 1.996 -0.963 -1.706 -0.497 CB2 QC4 15 QC4 CG2 CG2 C 0 1 Y N N N N N 5.197 13.324 2.822 -2.125 -0.847 -0.267 CG2 QC4 16 QC4 CD1 CD1 C 0 1 Y N N N N N 6.050 13.182 4.042 -2.025 0.539 -0.457 CD1 QC4 17 QC4 CD2 CD2 C 0 1 Y N N N N N 4.793 14.668 2.485 -3.347 -1.408 0.140 CD2 QC4 18 QC4 CE1 CE1 C 0 1 Y N N N N N 6.420 14.295 4.821 -3.122 1.343 -0.239 CE1 QC4 19 QC4 CE2 CE2 C 0 1 Y N N N N N 5.153 15.775 3.247 -4.439 -0.591 0.356 CE2 QC4 20 QC4 CZ CZ C 0 1 Y N N N N N 5.990 15.682 4.469 -4.330 0.783 0.170 CZ QC4 21 QC4 OH OH O 0 1 N N N N N N 6.302 16.700 5.139 -5.407 1.582 0.384 OH QC4 22 QC4 F1 F1 F 0 1 N N N N N N 4.710 16.981 2.848 -5.616 -1.127 0.747 F1 QC4 23 QC4 F2 F2 F 0 1 N N N N N N 4.024 14.802 1.388 -3.453 -2.743 0.321 F2 QC4 24 QC4 F3 F3 F 0 1 N N N N N N 7.195 14.115 5.916 -3.026 2.678 -0.422 F3 QC4 25 QC4 OXT O1 O 0 1 N Y N Y N Y 4.128 6.682 1.789 5.857 -1.385 0.813 O1 QC4 26 QC4 H H1 H 0 1 N N N Y Y N 9.173 7.569 2.135 1.725 2.286 -2.473 H1 QC4 27 QC4 H2 H2 H 0 1 N Y N Y Y N 8.199 7.993 0.895 0.917 2.728 -1.088 H2 QC4 28 QC4 HA1 H4 H 0 1 N N N Y N N 6.900 7.175 2.661 3.592 1.495 -1.222 H4 QC4 29 QC4 H5 H5 H 0 1 N N N N N N 6.885 8.332 4.804 3.496 1.499 1.224 H5 QC4 30 QC4 H6 H6 H 0 1 N N N N N N 9.150 7.797 5.655 2.776 4.229 0.064 H6 QC4 31 QC4 H7 H7 H 0 1 N N N N N N 8.540 6.516 4.553 3.590 3.944 1.622 H7 QC4 32 QC4 H8 H8 H 0 1 N N N N N N 9.758 7.699 3.968 4.405 3.513 0.099 H8 QC4 33 QC4 H9 H9 H 0 1 N N N N N N 8.502 9.943 5.215 0.922 2.806 0.917 H9 QC4 34 QC4 HA31 H10 H 0 1 N N N Y N N 6.548 7.140 0.455 4.172 -2.075 -1.274 H10 QC4 35 QC4 HA32 H11 H 0 1 N N N Y N N 5.585 7.959 -0.821 4.440 -0.316 -1.313 H11 QC4 36 QC4 H12 H12 H 0 1 N N N N N N 3.924 12.470 1.369 -1.093 -2.772 -0.610 H12 QC4 37 QC4 H14 H14 H 0 1 N N N N N N 6.391 12.200 4.333 -1.089 0.976 -0.774 H14 QC4 38 QC4 HXT H15 H 0 1 N Y N Y N Y 3.471 6.006 1.907 6.175 -1.413 1.726 H15 QC4 39 QC4 H3 H3 H 0 1 N N N N N N 6.837 16.440 5.880 -5.481 1.908 1.291 H3 QC4 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QC4 O3 C3 DOUB N N 1 QC4 O2 C2 DOUB N N 2 QC4 CA3 C3 SING N N 3 QC4 CA3 N3 SING N N 4 QC4 C2 N3 SING N N 5 QC4 C2 CA2 SING N N 6 QC4 N3 C1 SING N N 7 QC4 F2 CD2 SING N N 8 QC4 N1 CA1 SING N N 9 QC4 CA2 CB2 DOUB N Z 10 QC4 CA2 N2 SING N N 11 QC4 CB2 CG2 SING N N 12 QC4 C1 N2 DOUB N N 13 QC4 C1 CA1 SING N N 14 QC4 CD2 CG2 SING Y N 15 QC4 CD2 CE2 DOUB Y N 16 QC4 CA1 CB1 SING N N 17 QC4 CG2 CD1 DOUB Y N 18 QC4 F1 CE2 SING N N 19 QC4 CE2 CZ SING Y N 20 QC4 CD1 CE1 SING Y N 21 QC4 CB1 OG1 SING N N 22 QC4 CB1 CG1 SING N N 23 QC4 CZ CE1 DOUB Y N 24 QC4 CZ OH SING N N 25 QC4 CE1 F3 SING N N 26 QC4 C3 OXT SING N N 27 QC4 N1 H SING N N 28 QC4 N1 H2 SING N N 29 QC4 CA1 HA1 SING N N 30 QC4 CB1 H5 SING N N 31 QC4 CG1 H6 SING N N 32 QC4 CG1 H7 SING N N 33 QC4 CG1 H8 SING N N 34 QC4 OG1 H9 SING N N 35 QC4 CA3 HA31 SING N N 36 QC4 CA3 HA32 SING N N 37 QC4 CB2 H12 SING N N 38 QC4 CD1 H14 SING N N 39 QC4 OXT HXT SING N N 40 QC4 OH H3 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QC4 SMILES ACDLabs 12.01 "NC(C(O)C)C1=N/C(C(N1CC(O)=O)=O)=C\c2cc(F)c(c(c2F)F)O" QC4 InChI InChI 1.03 "InChI=1S/C15H14F3N3O5/c1-5(22)12(19)14-20-8(15(26)21(14)4-9(23)24)3-6-2-7(16)13(25)11(18)10(6)17/h2-3,5,12,22,25H,4,19H2,1H3,(H,23,24)/b8-3-/t5-,12+/m1/s1" QC4 InChIKey InChI 1.03 SPNDQVGBAVKMMP-HNLMWGSMSA-N QC4 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@H](N)C1=N\C(=C/c2cc(F)c(O)c(F)c2F)C(=O)N1CC(O)=O" QC4 SMILES CACTVS 3.385 "C[CH](O)[CH](N)C1=NC(=Cc2cc(F)c(O)c(F)c2F)C(=O)N1CC(O)=O" QC4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](C1=N/C(=C\c2cc(c(c(c2F)F)O)F)/C(=O)N1CC(=O)O)N)O" QC4 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C1=NC(=Cc2cc(c(c(c2F)F)O)F)C(=O)N1CC(=O)O)N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier QC4 "SYSTEMATIC NAME" ACDLabs 12.01 "{(4Z)-2-[(1R,2R)-1-amino-2-hydroxypropyl]-5-oxo-4-[(2,3,5-trifluoro-4-hydroxyphenyl)methylidene]-4,5-dihydro-1H-imidazol-1-yl}acetic acid" QC4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(4~{Z})-2-[(1~{R},2~{R})-1-azanyl-2-oxidanyl-propyl]-5-oxidanylidene-4-[[2,3,5-tris(fluoranyl)-4-oxidanyl-phenyl]methylidene]imidazol-1-yl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QC4 "Create component" 2019-10-11 RCSB QC4 "Modify name" 2019-10-16 RCSB QC4 "Initial release" 2020-10-14 RCSB QC4 "Modify synonyms" 2021-03-01 PDBE QC4 "Modify backbone" 2023-11-03 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id QC4 _pdbx_chem_comp_synonyms.name "PEPTIDE DERIVED CHROMOPHORE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #