data_QD5 # _chem_comp.id QD5 _chem_comp.name "~{N}5-cyclopropyl-1-(1~{H}-indol-4-ylmethyl)-~{N}3-methyl-2-oxidanylidene-pyridine-3,5-dicarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H20 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-08 _chem_comp.pdbx_modified_date 2020-07-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 364.398 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QD5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6ZB2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QD5 C10 C1 C 0 1 N N N 43.365 16.776 7.998 1.871 0.917 -0.049 C10 QD5 1 QD5 C13 C2 C 0 1 N N N 42.945 18.472 9.662 0.277 -0.573 -1.093 C13 QD5 2 QD5 C20 C3 C 0 1 Y N N 39.338 17.561 11.075 -3.813 0.758 -0.278 C20 QD5 3 QD5 C22 C4 C 0 1 Y N N 38.929 16.758 12.124 -4.734 0.469 0.720 C22 QD5 4 QD5 C24 C5 C 0 1 Y N N 39.444 16.945 13.391 -4.776 -0.781 1.296 C24 QD5 5 QD5 C26 C6 C 0 1 Y N N 40.381 17.952 13.587 -3.888 -1.766 0.876 C26 QD5 6 QD5 C01 C7 C 0 1 N N N 39.735 14.979 5.211 0.579 5.550 0.980 C01 QD5 7 QD5 N05 N1 N 0 1 N N N 40.303 15.892 6.185 0.299 4.243 0.380 N05 QD5 8 QD5 C07 C8 C 0 1 N N N 41.589 15.862 6.509 1.252 3.291 0.364 C07 QD5 9 QD5 O08 O1 O 0 1 N N N 42.344 15.010 6.039 2.373 3.545 0.763 O08 QD5 10 QD5 C09 C9 C 0 1 N N N 42.062 16.805 7.580 0.937 1.943 -0.135 C09 QD5 11 QD5 C12 C10 C 0 1 N N N 43.835 17.635 9.079 1.525 -0.356 -0.541 C12 QD5 12 QD5 N15 N2 N 0 1 N N N 41.637 18.554 9.279 -0.632 0.411 -1.186 N15 QD5 13 QD5 C16 C11 C 0 1 N N N 40.718 19.412 10.048 -1.936 0.130 -1.790 C16 QD5 14 QD5 C19 C12 C 0 1 Y N N 40.249 18.598 11.241 -2.932 -0.194 -0.706 C19 QD5 15 QD5 N27 N3 N 0 1 Y N N 41.045 18.353 14.719 -3.683 -3.077 1.243 N27 QD5 16 QD5 C29 C13 C 0 1 Y N N 41.873 19.401 14.402 -2.663 -3.613 0.504 C29 QD5 17 QD5 C31 C14 C 0 1 Y N N 41.759 19.695 13.081 -2.182 -2.693 -0.346 C31 QD5 18 QD5 C33 C15 C 0 1 Y N N 40.806 18.776 12.522 -2.957 -1.468 -0.136 C33 QD5 19 QD5 C34 C16 C 0 1 N N N 41.106 17.730 8.283 -0.367 1.652 -0.735 C34 QD5 20 QD5 O35 O2 O 0 1 N N N 39.929 17.817 7.973 -1.208 2.529 -0.826 O35 QD5 21 QD5 C36 C17 C 0 1 N N N 45.225 17.685 9.582 2.498 -1.462 -0.468 C36 QD5 22 QD5 O37 O3 O 0 1 N N N 45.601 18.695 10.179 2.201 -2.563 -0.892 O37 QD5 23 QD5 N38 N4 N 0 1 N N N 46.049 16.639 9.428 3.717 -1.253 0.070 N38 QD5 24 QD5 C40 C18 C 0 1 N N N 47.420 16.697 9.929 4.683 -2.352 0.143 C40 QD5 25 QD5 C42 C19 C 0 1 N N N 48.295 15.545 9.664 5.469 -2.516 1.445 C42 QD5 26 QD5 C45 C20 C 0 1 N N N 47.808 15.816 11.041 6.168 -1.985 0.192 C45 QD5 27 QD5 H1 H1 H 0 1 N N N 44.060 16.103 7.517 2.845 1.094 0.383 H1 QD5 28 QD5 H2 H2 H 0 1 N N N 43.286 19.105 10.468 0.029 -1.556 -1.466 H2 QD5 29 QD5 H3 H3 H 0 1 N N N 38.935 17.376 10.090 -3.796 1.742 -0.723 H3 QD5 30 QD5 H4 H4 H 0 1 N N N 38.201 15.979 11.951 -5.424 1.232 1.048 H4 QD5 31 QD5 H5 H5 H 0 1 N N N 39.125 16.321 14.213 -5.495 -0.996 2.073 H5 QD5 32 QD5 H6 H6 H 0 1 N N N 38.660 15.183 5.100 0.838 5.420 2.030 H6 QD5 33 QD5 H7 H7 H 0 1 N N N 40.236 15.119 4.242 1.411 6.019 0.455 H7 QD5 34 QD5 H8 H8 H 0 1 N N N 39.879 13.943 5.552 -0.305 6.184 0.899 H8 QD5 35 QD5 H9 H9 H 0 1 N N N 39.707 16.564 6.625 -0.573 4.063 -0.006 H9 QD5 36 QD5 H10 H10 H 0 1 N N N 41.242 20.317 10.390 -2.275 1.004 -2.346 H10 QD5 37 QD5 H11 H11 H 0 1 N N N 39.858 19.700 9.425 -1.847 -0.719 -2.467 H11 QD5 38 QD5 H12 H12 H 0 1 N N N 40.942 17.948 15.627 -4.186 -3.550 1.925 H12 QD5 39 QD5 H13 H13 H 0 1 N N N 42.519 19.915 15.099 -2.299 -4.626 0.594 H13 QD5 40 QD5 H14 H14 H 0 1 N N N 42.286 20.474 12.550 -1.376 -2.830 -1.052 H14 QD5 41 QD5 H15 H15 H 0 1 N N N 45.723 15.814 8.967 3.953 -0.376 0.408 H15 QD5 42 QD5 H16 H16 H 0 1 N N N 47.904 17.685 9.906 4.407 -3.258 -0.396 H16 QD5 43 QD5 H17 H17 H 0 1 N N N 47.911 14.679 9.104 5.266 -1.807 2.248 H17 QD5 44 QD5 H18 H18 H 0 1 N N N 49.354 15.704 9.413 5.709 -3.530 1.764 H18 QD5 45 QD5 H19 H19 H 0 1 N N N 47.063 15.151 11.503 6.868 -2.649 -0.314 H19 QD5 46 QD5 H20 H20 H 0 1 N N N 48.506 16.176 11.811 6.425 -0.926 0.171 H20 QD5 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QD5 C01 N05 SING N N 1 QD5 O08 C07 DOUB N N 2 QD5 N05 C07 SING N N 3 QD5 C07 C09 SING N N 4 QD5 C09 C10 DOUB N N 5 QD5 C09 C34 SING N N 6 QD5 O35 C34 DOUB N N 7 QD5 C10 C12 SING N N 8 QD5 C34 N15 SING N N 9 QD5 C12 C36 SING N N 10 QD5 C12 C13 DOUB N N 11 QD5 N15 C13 SING N N 12 QD5 N15 C16 SING N N 13 QD5 N38 C36 SING N N 14 QD5 N38 C40 SING N N 15 QD5 C36 O37 DOUB N N 16 QD5 C42 C40 SING N N 17 QD5 C42 C45 SING N N 18 QD5 C40 C45 SING N N 19 QD5 C16 C19 SING N N 20 QD5 C20 C19 DOUB Y N 21 QD5 C20 C22 SING Y N 22 QD5 C19 C33 SING Y N 23 QD5 C22 C24 DOUB Y N 24 QD5 C33 C31 SING Y N 25 QD5 C33 C26 DOUB Y N 26 QD5 C31 C29 DOUB Y N 27 QD5 C24 C26 SING Y N 28 QD5 C26 N27 SING Y N 29 QD5 C29 N27 SING Y N 30 QD5 C10 H1 SING N N 31 QD5 C13 H2 SING N N 32 QD5 C20 H3 SING N N 33 QD5 C22 H4 SING N N 34 QD5 C24 H5 SING N N 35 QD5 C01 H6 SING N N 36 QD5 C01 H7 SING N N 37 QD5 C01 H8 SING N N 38 QD5 N05 H9 SING N N 39 QD5 C16 H10 SING N N 40 QD5 C16 H11 SING N N 41 QD5 N27 H12 SING N N 42 QD5 C29 H13 SING N N 43 QD5 C31 H14 SING N N 44 QD5 N38 H15 SING N N 45 QD5 C40 H16 SING N N 46 QD5 C42 H17 SING N N 47 QD5 C42 H18 SING N N 48 QD5 C45 H19 SING N N 49 QD5 C45 H20 SING N N 50 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QD5 InChI InChI 1.03 "InChI=1S/C20H20N4O3/c1-21-19(26)16-9-13(18(25)23-14-5-6-14)11-24(20(16)27)10-12-3-2-4-17-15(12)7-8-22-17/h2-4,7-9,11,14,22H,5-6,10H2,1H3,(H,21,26)(H,23,25)" QD5 InChIKey InChI 1.03 PDCBJZVPIGAEBL-UHFFFAOYSA-N QD5 SMILES_CANONICAL CACTVS 3.385 "CNC(=O)C1=CC(=CN(Cc2cccc3[nH]ccc23)C1=O)C(=O)NC4CC4" QD5 SMILES CACTVS 3.385 "CNC(=O)C1=CC(=CN(Cc2cccc3[nH]ccc23)C1=O)C(=O)NC4CC4" QD5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)C1=CC(=CN(C1=O)Cc2cccc3c2cc[nH]3)C(=O)NC4CC4" QD5 SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=O)C1=CC(=CN(C1=O)Cc2cccc3c2cc[nH]3)C(=O)NC4CC4" # _pdbx_chem_comp_identifier.comp_id QD5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}5-cyclopropyl-1-(1~{H}-indol-4-ylmethyl)-~{N}3-methyl-2-oxidanylidene-pyridine-3,5-dicarboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QD5 "Create component" 2020-06-08 PDBE QD5 "Initial release" 2020-08-05 RCSB ##