data_QD8 # _chem_comp.id QD8 _chem_comp.name "(S)-3-butyl-2-oxopentanedioic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H14 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3~{S})-3-butyl-2-oxidanylidene-pentanedioic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-10-25 _chem_comp.pdbx_modified_date 2022-10-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 202.204 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QD8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BAY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QD8 C6 C1 C 0 1 N N N 21.895 309.669 43.965 5.095 -0.128 0.334 C6 QD8 1 QD8 C1 C2 C 0 1 N N N 18.884 314.137 45.493 -1.112 -0.663 -0.495 C1 QD8 2 QD8 C2 C3 C 0 1 N N S 18.759 312.859 44.737 0.108 0.025 0.059 C2 QD8 3 QD8 C3 C4 C 0 1 N N N 19.062 311.686 45.679 1.368 -0.670 -0.463 C3 QD8 4 QD8 C8 C5 C 0 1 N N N 17.059 311.479 43.431 -1.050 2.210 0.247 C8 QD8 5 QD8 C7 C6 C 0 1 N N N 17.340 312.761 44.172 0.113 1.490 -0.384 C7 QD8 6 QD8 O1 O1 O 0 1 N N N 19.815 315.542 43.777 -1.272 -2.144 1.316 O1 QD8 7 QD8 C5 C7 C 0 1 N N N 20.621 310.464 44.102 3.861 -0.747 -0.325 C5 QD8 8 QD8 C C8 C 0 1 N N N 19.913 315.181 45.030 -1.724 -1.804 0.243 C QD8 9 QD8 O O2 O 0 1 N N N 20.757 315.633 45.792 -2.778 -2.457 -0.280 O QD8 10 QD8 C4 C9 C 0 1 N N N 20.435 311.056 45.487 2.602 -0.052 0.197 C4 QD8 11 QD8 O2 O3 O 0 1 N N N 16.100 310.767 43.965 -1.318 3.480 -0.093 O2 QD8 12 QD8 O3 O4 O 0 1 N N N 17.670 311.143 42.437 -1.741 1.644 1.061 O3 QD8 13 QD8 O4 O5 O 0 1 N N N 18.189 314.373 46.467 -1.594 -0.291 -1.538 O4 QD8 14 QD8 H1 H1 H 0 1 N N N 21.970 309.269 42.943 5.141 0.934 0.095 H1 QD8 15 QD8 H2 H2 H 0 1 N N N 22.757 310.321 44.167 5.032 -0.255 1.415 H2 QD8 16 QD8 H3 H3 H 0 1 N N N 21.887 308.837 44.685 5.992 -0.624 -0.037 H3 QD8 17 QD8 H4 H4 H 0 1 N N N 19.480 312.848 43.906 0.091 -0.025 1.148 H4 QD8 18 QD8 H5 H5 H 0 1 N N N 18.994 312.051 46.714 1.322 -1.732 -0.223 H5 QD8 19 QD8 H6 H6 H 0 1 N N N 18.302 310.908 45.514 1.431 -0.543 -1.543 H6 QD8 20 QD8 H7 H7 H 0 1 N N N 17.185 313.601 43.479 1.046 1.961 -0.072 H7 QD8 21 QD8 H8 H8 H 0 1 N N N 16.629 312.840 45.008 0.026 1.541 -1.470 H8 QD8 22 QD8 H9 H9 H 0 1 N N N 20.640 311.285 43.370 3.925 -0.620 -1.406 H9 QD8 23 QD8 H10 H10 H 0 1 N N N 19.770 309.801 43.887 3.815 -1.809 -0.086 H10 QD8 24 QD8 H11 H11 H 0 1 N N N 21.299 316.261 45.329 -3.141 -3.190 0.235 H11 QD8 25 QD8 H12 H12 H 0 1 N N N 20.562 310.256 46.231 2.648 1.011 -0.043 H12 QD8 26 QD8 H13 H13 H 0 1 N N N 21.202 311.829 45.645 2.538 -0.178 1.277 H13 QD8 27 QD8 H14 H14 H 0 1 N N N 15.973 309.974 43.457 -2.074 3.900 0.338 H14 QD8 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QD8 O3 C8 DOUB N N 1 QD8 C8 O2 SING N N 2 QD8 C8 C7 SING N N 3 QD8 O1 C DOUB N N 4 QD8 C6 C5 SING N N 5 QD8 C5 C4 SING N N 6 QD8 C7 C2 SING N N 7 QD8 C2 C1 SING N N 8 QD8 C2 C3 SING N N 9 QD8 C C1 SING N N 10 QD8 C O SING N N 11 QD8 C4 C3 SING N N 12 QD8 C1 O4 DOUB N N 13 QD8 C6 H1 SING N N 14 QD8 C6 H2 SING N N 15 QD8 C6 H3 SING N N 16 QD8 C2 H4 SING N N 17 QD8 C3 H5 SING N N 18 QD8 C3 H6 SING N N 19 QD8 C7 H7 SING N N 20 QD8 C7 H8 SING N N 21 QD8 C5 H9 SING N N 22 QD8 C5 H10 SING N N 23 QD8 O H11 SING N N 24 QD8 C4 H12 SING N N 25 QD8 C4 H13 SING N N 26 QD8 O2 H14 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QD8 InChI InChI 1.06 "InChI=1S/C9H14O5/c1-2-3-4-6(5-7(10)11)8(12)9(13)14/h6H,2-5H2,1H3,(H,10,11)(H,13,14)/t6-/m0/s1" QD8 InChIKey InChI 1.06 RVKQLIHFWCFUHE-LURJTMIESA-N QD8 SMILES_CANONICAL CACTVS 3.385 "CCCC[C@@H](CC(O)=O)C(=O)C(O)=O" QD8 SMILES CACTVS 3.385 "CCCC[CH](CC(O)=O)C(=O)C(O)=O" QD8 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCCC[C@@H](CC(=O)O)C(=O)C(=O)O" QD8 SMILES "OpenEye OEToolkits" 3.1.0.0 "CCCCC(CC(=O)O)C(=O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id QD8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "(3~{S})-3-butyl-2-oxidanylidene-pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QD8 "Create component" 2022-10-25 PDBE QD8 "Initial release" 2022-11-02 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id QD8 _pdbx_chem_comp_synonyms.name "(3~{S})-3-butyl-2-oxidanylidene-pentanedioic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #