data_QDA # _chem_comp.id QDA _chem_comp.name "N~4~,N~6~-dicyclopentyl-2-(methylsulfanyl)-5-nitropyrimidine-4,6-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H23 N5 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-10-16 _chem_comp.pdbx_modified_date 2020-06-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 337.440 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QDA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6UO8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QDA C04 C1 C 0 1 Y N N 142.656 138.702 100.102 0.169 -0.858 -0.244 C04 QDA 1 QDA C05 C2 C 0 1 Y N N 141.932 137.631 99.534 1.307 -0.057 -0.251 C05 QDA 2 QDA C07 C3 C 0 1 N N N 139.900 137.117 100.991 3.761 0.222 -0.274 C07 QDA 3 QDA C08 C4 C 0 1 N N N 140.858 136.561 102.075 4.946 -0.534 -0.900 C08 QDA 4 QDA C09 C5 C 0 1 N N N 140.657 135.052 102.214 6.037 -0.621 0.186 C09 QDA 5 QDA C10 C6 C 0 1 N N N 139.570 134.659 101.233 5.259 -0.480 1.518 C10 QDA 6 QDA C11 C7 C 0 1 N N N 138.885 135.955 100.831 4.174 0.569 1.171 C11 QDA 7 QDA C13 C8 C 0 1 Y N N 143.948 136.938 98.641 -0.035 1.822 -0.231 C13 QDA 8 QDA C15 C9 C 0 1 N N N 144.397 135.909 95.896 -1.970 3.757 -0.204 C15 QDA 9 QDA C17 C10 C 0 1 Y N N 144.055 138.860 99.911 -1.077 -0.239 -0.235 C17 QDA 10 QDA C19 C11 C 0 1 N N N 144.798 141.324 100.044 -3.545 -0.335 -0.222 C19 QDA 11 QDA C20 C12 C 0 1 N N N 145.447 142.293 101.045 -4.610 -1.263 -0.833 C20 QDA 12 QDA C21 C13 C 0 1 N N N 146.950 142.246 100.782 -5.660 -1.513 0.270 C21 QDA 13 QDA C22 C14 C 0 1 N N N 147.131 141.770 99.348 -5.514 -0.296 1.217 C22 QDA 14 QDA C23 C15 C 0 1 N N N 145.727 141.488 98.811 -3.984 -0.054 1.229 C23 QDA 15 QDA N02 N1 N 1 1 N N N 141.938 139.666 100.898 0.282 -2.334 -0.251 N02 QDA 16 QDA N06 N2 N 0 1 N N N 140.573 137.472 99.716 2.569 -0.630 -0.266 N06 QDA 17 QDA N12 N3 N 0 1 Y N N 142.626 136.715 98.768 1.168 1.266 -0.245 N12 QDA 18 QDA N16 N4 N 0 1 Y N N 144.719 137.930 99.144 -1.140 1.090 -0.228 N16 QDA 19 QDA N18 N5 N 0 1 N N N 144.744 139.921 100.486 -2.238 -0.997 -0.232 N18 QDA 20 QDA O01 O1 O 0 1 N N N 140.977 140.204 100.429 0.317 -2.937 -1.309 O01 QDA 21 QDA O03 O2 O -1 1 N N N 142.355 139.880 102.015 0.338 -2.946 0.800 O03 QDA 22 QDA S14 S1 S 0 1 N N N 144.774 135.719 97.637 -0.169 3.579 -0.222 S14 QDA 23 QDA H1 H1 H 0 1 N N N 139.376 137.996 101.394 3.562 1.135 -0.835 H1 QDA 24 QDA H2 H2 H 0 1 N N N 141.899 136.766 101.784 4.635 -1.536 -1.198 H2 QDA 25 QDA H3 H3 H 0 1 N N N 140.644 137.049 103.037 5.322 0.012 -1.765 H3 QDA 26 QDA H4 H4 H 0 1 N N N 140.347 134.805 103.240 6.545 -1.584 0.141 H4 QDA 27 QDA H5 H5 H 0 1 N N N 141.591 134.523 101.975 6.753 0.193 0.073 H5 QDA 28 QDA H6 H6 H 0 1 N N N 138.851 133.978 101.711 4.803 -1.429 1.801 H6 QDA 29 QDA H7 H7 H 0 1 N N N 140.009 134.169 100.352 5.912 -0.116 2.311 H7 QDA 30 QDA H8 H8 H 0 1 N N N 138.014 136.131 101.479 4.588 1.576 1.218 H8 QDA 31 QDA H9 H9 H 0 1 N N N 138.556 135.891 99.783 3.322 0.474 1.844 H9 QDA 32 QDA H10 H10 H 0 1 N N N 144.928 135.137 95.319 -2.374 3.277 0.688 H10 QDA 33 QDA H11 H11 H 0 1 N N N 143.313 135.802 95.742 -2.231 4.815 -0.197 H11 QDA 34 QDA H12 H12 H 0 1 N N N 144.718 136.905 95.558 -2.391 3.285 -1.092 H12 QDA 35 QDA H13 H13 H 0 1 N N N 143.790 141.683 99.788 -3.495 0.597 -0.785 H13 QDA 36 QDA H14 H14 H 0 1 N N N 145.066 143.313 100.888 -5.078 -0.780 -1.691 H14 QDA 37 QDA H15 H15 H 0 1 N N N 145.232 141.975 102.076 -4.155 -2.205 -1.137 H15 QDA 38 QDA H16 H16 H 0 1 N N N 147.434 141.545 101.478 -6.662 -1.546 -0.158 H16 QDA 39 QDA H17 H17 H 0 1 N N N 147.388 143.247 100.907 -5.442 -2.440 0.800 H17 QDA 40 QDA H18 H18 H 0 1 N N N 147.739 140.854 99.324 -6.039 0.571 0.815 H18 QDA 41 QDA H19 H19 H 0 1 N N N 147.620 142.550 98.746 -5.878 -0.538 2.215 H19 QDA 42 QDA H20 H20 H 0 1 N N N 145.384 142.327 98.188 -3.494 -0.744 1.916 H20 QDA 43 QDA H21 H21 H 0 1 N N N 145.729 140.565 98.213 -3.764 0.978 1.502 H21 QDA 44 QDA H22 H22 H 0 1 N N N 140.168 138.343 99.439 2.664 -1.596 -0.272 H22 QDA 45 QDA H23 H23 H 0 1 N N N 144.399 139.966 101.423 -2.185 -1.965 -0.237 H23 QDA 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QDA C15 S14 SING N N 1 QDA S14 C13 SING N N 2 QDA C13 N12 DOUB Y N 3 QDA C13 N16 SING Y N 4 QDA N12 C05 SING Y N 5 QDA C23 C22 SING N N 6 QDA C23 C19 SING N N 7 QDA N16 C17 DOUB Y N 8 QDA C22 C21 SING N N 9 QDA C05 N06 SING N N 10 QDA C05 C04 DOUB Y N 11 QDA N06 C07 SING N N 12 QDA C17 C04 SING Y N 13 QDA C17 N18 SING N N 14 QDA C19 N18 SING N N 15 QDA C19 C20 SING N N 16 QDA C04 N02 SING N N 17 QDA O01 N02 DOUB N N 18 QDA C21 C20 SING N N 19 QDA C11 C07 SING N N 20 QDA C11 C10 SING N N 21 QDA N02 O03 SING N N 22 QDA C07 C08 SING N N 23 QDA C10 C09 SING N N 24 QDA C08 C09 SING N N 25 QDA C07 H1 SING N N 26 QDA C08 H2 SING N N 27 QDA C08 H3 SING N N 28 QDA C09 H4 SING N N 29 QDA C09 H5 SING N N 30 QDA C10 H6 SING N N 31 QDA C10 H7 SING N N 32 QDA C11 H8 SING N N 33 QDA C11 H9 SING N N 34 QDA C15 H10 SING N N 35 QDA C15 H11 SING N N 36 QDA C15 H12 SING N N 37 QDA C19 H13 SING N N 38 QDA C20 H14 SING N N 39 QDA C20 H15 SING N N 40 QDA C21 H16 SING N N 41 QDA C21 H17 SING N N 42 QDA C22 H18 SING N N 43 QDA C22 H19 SING N N 44 QDA C23 H20 SING N N 45 QDA C23 H21 SING N N 46 QDA N06 H22 SING N N 47 QDA N18 H23 SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QDA SMILES ACDLabs 12.01 "c2([N+]([O-])=O)c(NC1CCCC1)nc(nc2NC3CCCC3)SC" QDA InChI InChI 1.03 "InChI=1S/C15H23N5O2S/c1-23-15-18-13(16-10-6-2-3-7-10)12(20(21)22)14(19-15)17-11-8-4-5-9-11/h10-11H,2-9H2,1H3,(H2,16,17,18,19)" QDA InChIKey InChI 1.03 GSGVDKOCBKBMGG-UHFFFAOYSA-N QDA SMILES_CANONICAL CACTVS 3.385 "CSc1nc(NC2CCCC2)c(c(NC3CCCC3)n1)[N+]([O-])=O" QDA SMILES CACTVS 3.385 "CSc1nc(NC2CCCC2)c(c(NC3CCCC3)n1)[N+]([O-])=O" QDA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CSc1nc(c(c(n1)NC2CCCC2)[N+](=O)[O-])NC3CCCC3" QDA SMILES "OpenEye OEToolkits" 2.0.7 "CSc1nc(c(c(n1)NC2CCCC2)[N+](=O)[O-])NC3CCCC3" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier QDA "SYSTEMATIC NAME" ACDLabs 12.01 "N~4~,N~6~-dicyclopentyl-2-(methylsulfanyl)-5-nitropyrimidine-4,6-diamine" QDA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}4,~{N}6-dicyclopentyl-2-methylsulfanyl-5-nitro-pyrimidine-4,6-diamine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QDA "Create component" 2019-10-16 RCSB QDA "Initial release" 2020-06-10 RCSB ##