data_QDH # _chem_comp.id QDH _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-[6-chloranyl-4-[[(1~{S})-1-(2-fluorophenyl)ethyl]amino]pyrazolo[3,4-b]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 Cl F N4 O9 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-08 _chem_comp.pdbx_modified_date 2020-09-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 580.825 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QDH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6Z9D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QDH N1 N1 N 0 1 Y N N -13.908 20.057 -33.927 -0.746 0.052 -1.301 N1 QDH 1 QDH N3 N2 N 0 1 N N N -11.522 23.471 -35.256 -4.762 1.011 0.041 N3 QDH 2 QDH C4 C1 C 0 1 N N N -18.009 17.688 -29.520 6.248 1.295 1.190 C4 QDH 3 QDH C5 C2 C 0 1 N N R -15.611 19.036 -35.455 0.554 -1.922 -0.342 C5 QDH 4 QDH C6 C3 C 0 1 Y N N -13.052 21.079 -34.007 -1.915 0.601 -1.137 C6 QDH 5 QDH C7 C4 C 0 1 Y N N -13.145 21.706 -35.295 -2.619 -0.128 -0.151 C7 QDH 6 QDH C8 C5 C 0 1 Y N N -14.147 20.983 -36.004 -1.776 -1.171 0.273 C8 QDH 7 QDH C10 C6 C 0 1 Y N N -12.959 23.061 -37.300 -4.266 -0.928 1.398 C10 QDH 8 QDH C13 C7 C 0 1 Y N N -11.192 25.814 -34.416 -7.028 1.811 -0.294 C13 QDH 9 QDH C15 C8 C 0 1 Y N N -11.107 28.221 -33.839 -7.400 3.337 -2.101 C15 QDH 10 QDH C17 C9 C 0 1 Y N N -12.756 26.812 -32.768 -9.254 2.204 -1.096 C17 QDH 11 QDH C11 C10 C 0 1 Y N N -12.512 22.771 -35.946 -3.897 -0.004 0.428 C11 QDH 12 QDH C9 C11 C 0 1 Y N N -13.954 22.231 -37.873 -3.378 -1.927 1.759 C9 QDH 13 QDH CL CL1 CL 0 0 N N N -14.365 22.447 -39.560 -3.845 -3.078 2.972 CL QDH 14 QDH N2 N3 N 0 1 Y N N -14.592 21.196 -37.289 -2.186 -2.024 1.205 N2 QDH 15 QDH N N4 N 0 1 Y N N -14.574 20.002 -35.135 -0.618 -1.050 -0.447 N QDH 16 QDH C1 C12 C 0 1 N N R -15.000 17.647 -35.739 0.673 -2.817 -1.596 C1 QDH 17 QDH O1 O1 O 0 1 N N N -15.722 17.167 -36.854 0.134 -4.115 -1.338 O1 QDH 18 QDH O8 O2 O 0 1 N N N -16.498 18.916 -34.404 1.766 -1.137 -0.332 O8 QDH 19 QDH C2 C13 C 0 1 N N R -16.702 17.567 -34.110 2.814 -2.051 -0.723 C2 QDH 20 QDH C C14 C 0 1 N N S -15.361 16.920 -34.454 2.194 -2.903 -1.852 C QDH 21 QDH O O3 O 0 1 N N N -15.472 15.551 -34.643 2.642 -4.257 -1.760 O QDH 22 QDH C3 C15 C 0 1 N N N -16.864 17.336 -32.586 4.028 -1.278 -1.244 C3 QDH 23 QDH O2 O4 O 0 1 N N N -18.030 17.891 -32.086 4.611 -0.530 -0.175 O2 QDH 24 QDH P P1 P 0 1 N N N -18.907 17.267 -30.936 5.910 0.403 -0.363 P QDH 25 QDH O7 O5 O 0 1 N N N -19.206 15.803 -31.090 5.663 1.378 -1.449 O7 QDH 26 QDH O6 O6 O 0 1 N N N -20.255 18.095 -30.965 7.178 -0.514 -0.743 O6 QDH 27 QDH P1 P2 P 0 1 N N N -17.401 19.286 -29.435 7.719 2.351 0.976 P1 QDH 28 QDH O5 O7 O 0 1 N N N -16.785 19.985 -30.584 7.472 3.326 -0.110 O5 QDH 29 QDH O4 O8 O 0 1 N N N -16.475 19.539 -28.192 8.017 3.139 2.348 O4 QDH 30 QDH O3 O9 O 0 1 N N N -18.627 20.158 -29.077 8.987 1.434 0.596 O3 QDH 31 QDH F F1 F 0 1 N N N -12.815 24.524 -33.127 -8.872 0.696 0.692 F QDH 32 QDH C18 C16 C 0 1 Y N N -12.259 25.689 -33.461 -8.389 1.563 -0.225 C18 QDH 33 QDH C16 C17 C 0 1 Y N N -12.190 28.068 -32.968 -8.758 3.091 -2.033 C16 QDH 34 QDH C14 C18 C 0 1 Y N N -10.615 27.114 -34.545 -6.535 2.698 -1.232 C14 QDH 35 QDH C12 C19 C 0 1 N N S -10.714 24.698 -35.396 -6.087 1.119 0.658 C12 QDH 36 QDH C19 C20 C 0 1 N N N -10.658 25.205 -36.887 -5.982 1.930 1.951 C19 QDH 37 QDH H1 H1 H 0 1 N N N -11.962 23.621 -34.371 -4.489 1.648 -0.638 H1 QDH 38 QDH H2 H2 H 0 1 N N N -18.667 17.536 -28.652 5.389 1.916 1.447 H2 QDH 39 QDH H3 H3 H 0 1 N N N -17.151 17.002 -29.454 6.430 0.577 1.989 H3 QDH 40 QDH H4 H4 H 0 1 N N N -16.141 19.364 -36.361 0.491 -2.534 0.558 H4 QDH 41 QDH H5 H5 H 0 1 N N N -12.385 21.389 -33.216 -2.285 1.468 -1.664 H5 QDH 42 QDH H6 H6 H 0 1 N N N -12.542 23.889 -37.855 -5.238 -0.867 1.865 H6 QDH 43 QDH H7 H7 H 0 1 N N N -10.650 29.191 -33.968 -7.014 4.030 -2.834 H7 QDH 44 QDH H8 H8 H 0 1 N N N -13.580 26.697 -32.079 -10.315 2.011 -1.042 H8 QDH 45 QDH H9 H9 H 0 1 N N N -13.913 17.701 -35.897 0.169 -2.355 -2.444 H9 QDH 46 QDH H10 H10 H 0 1 N N N -15.401 16.306 -37.093 0.184 -4.718 -2.092 H10 QDH 47 QDH H11 H11 H 0 1 N N N -17.529 17.110 -34.674 3.100 -2.682 0.118 H11 QDH 48 QDH H12 H12 H 0 1 N N N -14.625 17.163 -33.673 2.442 -2.484 -2.827 H12 QDH 49 QDH H13 H13 H 0 1 N N N -15.698 15.134 -33.820 2.237 -4.850 -2.409 H13 QDH 50 QDH H14 H14 H 0 1 N N N -16.878 16.253 -32.393 4.762 -1.979 -1.640 H14 QDH 51 QDH H15 H15 H 0 1 N N N -16.007 17.790 -32.067 3.713 -0.596 -2.034 H15 QDH 52 QDH H16 H16 H 0 1 N N N -20.989 17.502 -31.074 7.398 -1.177 -0.075 H16 QDH 53 QDH H17 H17 H 0 1 N N N -15.736 20.077 -28.451 8.788 3.721 2.307 H17 QDH 54 QDH H18 H18 H 0 1 N N N -18.672 20.900 -29.669 9.207 0.771 1.265 H18 QDH 55 QDH H19 H19 H 0 1 N N N -12.589 28.927 -32.449 -9.432 3.591 -2.712 H19 QDH 56 QDH H20 H20 H 0 1 N N N -9.773 27.249 -35.208 -5.474 2.892 -1.286 H20 QDH 57 QDH H21 H21 H 0 1 N N N -9.681 24.451 -35.112 -6.465 0.123 0.883 H21 QDH 58 QDH H22 H22 H 0 1 N N N -10.047 26.118 -36.942 -5.301 1.429 2.639 H22 QDH 59 QDH H23 H23 H 0 1 N N N -10.211 24.426 -37.522 -5.603 2.927 1.726 H23 QDH 60 QDH H24 H24 H 0 1 N N N -11.677 25.424 -37.238 -6.968 2.011 2.410 H24 QDH 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QDH CL C9 SING N N 1 QDH C9 C10 DOUB Y N 2 QDH C9 N2 SING Y N 3 QDH C10 C11 SING Y N 4 QDH N2 C8 DOUB Y N 5 QDH C19 C12 SING N N 6 QDH O1 C1 SING N N 7 QDH C8 C7 SING Y N 8 QDH C8 N SING Y N 9 QDH C11 C7 DOUB Y N 10 QDH C11 N3 SING N N 11 QDH C1 C5 SING N N 12 QDH C1 C SING N N 13 QDH C5 N SING N N 14 QDH C5 O8 SING N N 15 QDH C12 N3 SING N N 16 QDH C12 C13 SING N N 17 QDH C7 C6 SING Y N 18 QDH N N1 SING Y N 19 QDH O C SING N N 20 QDH C14 C13 DOUB Y N 21 QDH C14 C15 SING Y N 22 QDH C C2 SING N N 23 QDH C13 C18 SING Y N 24 QDH O8 C2 SING N N 25 QDH C2 C3 SING N N 26 QDH C6 N1 DOUB Y N 27 QDH C15 C16 DOUB Y N 28 QDH C18 F SING N N 29 QDH C18 C17 DOUB Y N 30 QDH C16 C17 SING Y N 31 QDH C3 O2 SING N N 32 QDH O2 P SING N N 33 QDH O7 P DOUB N N 34 QDH O6 P SING N N 35 QDH P C4 SING N N 36 QDH O5 P1 DOUB N N 37 QDH C4 P1 SING N N 38 QDH P1 O3 SING N N 39 QDH P1 O4 SING N N 40 QDH N3 H1 SING N N 41 QDH C4 H2 SING N N 42 QDH C4 H3 SING N N 43 QDH C5 H4 SING N N 44 QDH C6 H5 SING N N 45 QDH C10 H6 SING N N 46 QDH C15 H7 SING N N 47 QDH C17 H8 SING N N 48 QDH C1 H9 SING N N 49 QDH O1 H10 SING N N 50 QDH C2 H11 SING N N 51 QDH C H12 SING N N 52 QDH O H13 SING N N 53 QDH C3 H14 SING N N 54 QDH C3 H15 SING N N 55 QDH O6 H16 SING N N 56 QDH O4 H17 SING N N 57 QDH O3 H18 SING N N 58 QDH C16 H19 SING N N 59 QDH C14 H20 SING N N 60 QDH C12 H21 SING N N 61 QDH C19 H22 SING N N 62 QDH C19 H23 SING N N 63 QDH C19 H24 SING N N 64 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QDH InChI InChI 1.03 "InChI=1S/C20H24ClFN4O9P2/c1-10(11-4-2-3-5-13(11)22)24-14-6-16(21)25-19-12(14)7-23-26(19)20-18(28)17(27)15(35-20)8-34-37(32,33)9-36(29,30)31/h2-7,10,15,17-18,20,27-28H,8-9H2,1H3,(H,24,25)(H,32,33)(H2,29,30,31)/t10-,15+,17+,18+,20+/m0/s1" QDH InChIKey InChI 1.03 MFYLCAMJNGIULC-KCVUFLITSA-N QDH SMILES_CANONICAL CACTVS 3.385 "C[C@H](Nc1cc(Cl)nc2n(ncc12)[C@@H]3O[C@H](CO[P](O)(=O)C[P](O)(O)=O)[C@@H](O)[C@H]3O)c4ccccc4F" QDH SMILES CACTVS 3.385 "C[CH](Nc1cc(Cl)nc2n(ncc12)[CH]3O[CH](CO[P](O)(=O)C[P](O)(O)=O)[CH](O)[CH]3O)c4ccccc4F" QDH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1ccccc1F)Nc2cc(nc3c2cnn3[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(CP(=O)(O)O)O)O)O)Cl" QDH SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1ccccc1F)Nc2cc(nc3c2cnn3C4C(C(C(O4)COP(=O)(CP(=O)(O)O)O)O)O)Cl" # _pdbx_chem_comp_identifier.comp_id QDH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-[6-chloranyl-4-[[(1~{S})-1-(2-fluorophenyl)ethyl]amino]pyrazolo[3,4-b]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QDH "Create component" 2020-06-08 PDBE QDH "Initial release" 2020-09-16 RCSB ##