data_QDL # _chem_comp.id QDL _chem_comp.name Antheraxanthin _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C40 H56 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(1~{R},3~{S},6~{S})-1,5,5-trimethyl-6-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]-7-oxabicyclo[4.1.0]heptan-3-ol" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-10-25 _chem_comp.pdbx_modified_date 2023-10-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 584.871 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QDL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BCV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QDL C1 C1 C 0 1 N N N 222.995 257.720 236.493 -13.200 1.034 -0.779 C1 QDL 1 QDL C2 C2 C 0 1 N N S 223.430 259.092 236.010 -13.957 -0.240 -0.384 C2 QDL 2 QDL C3 C3 C 0 1 N N N 222.343 260.113 236.291 -13.502 -0.665 1.012 C3 QDL 3 QDL C4 C4 C 0 1 N N R 220.992 259.646 235.793 -11.990 -0.824 1.055 C4 QDL 4 QDL C5 C5 C 0 1 N N S 220.716 258.218 235.501 -11.123 -0.108 0.031 C5 QDL 5 QDL C6 C6 C 0 1 N N N 221.804 257.117 235.719 -11.759 0.662 -1.124 C6 QDL 6 QDL C10 C7 C 0 1 N N N 221.270 255.911 236.502 -10.950 1.933 -1.393 C10 QDL 7 QDL C11 C8 C 0 1 N N N 222.298 256.597 234.363 -11.754 -0.213 -2.380 C11 QDL 8 QDL C13 C9 C 0 1 N N N 218.544 257.635 234.380 -8.659 -0.123 0.012 C13 QDL 9 QDL C14 C10 C 0 1 N N N 217.174 257.155 234.272 -7.401 0.362 0.451 C14 QDL 10 QDL C15 C11 C 0 1 N N N 216.601 257.091 233.045 -6.255 -0.177 -0.043 C15 QDL 11 QDL C16 C12 C 0 1 N N N 215.318 256.558 232.694 -5.008 0.304 0.393 C16 QDL 12 QDL C17 C13 C 0 1 N N N 215.043 256.113 231.461 -3.857 -0.237 -0.104 C17 QDL 13 QDL C18 C14 C 0 1 N N N 213.793 255.551 230.968 -2.613 0.242 0.331 C18 QDL 14 QDL C19 C15 C 0 1 N N N 216.482 256.700 235.527 -7.334 1.474 1.465 C19 QDL 15 QDL C20 C16 C 0 1 N N N 213.721 255.172 229.668 -1.452 -0.304 -0.170 C20 QDL 16 QDL C21 C17 C 0 1 N N N 212.640 255.436 231.927 -2.547 1.355 1.345 C21 QDL 17 QDL C22 C18 C 0 1 N N N 212.597 254.634 228.959 -0.210 0.175 0.264 C22 QDL 18 QDL C23 C19 C 0 1 N N N 212.586 254.526 227.612 0.951 -0.371 -0.237 C23 QDL 19 QDL C24 C20 C 0 1 N N N 211.494 254.003 226.840 2.193 0.107 0.196 C24 QDL 20 QDL C25 C21 C 0 1 N N N 211.445 253.811 225.497 3.355 -0.439 -0.305 C25 QDL 21 QDL C26 C22 C 0 1 N N N 210.222 253.300 224.893 4.597 0.040 0.129 C26 QDL 22 QDL C27 C23 C 0 1 N N N 210.019 253.048 223.591 5.758 -0.506 -0.372 C27 QDL 23 QDL C28 C24 C 0 1 N N N 212.601 254.117 224.584 3.289 -1.551 -1.319 C28 QDL 24 QDL C29 C25 C 0 1 N N N 208.794 252.562 223.034 7.002 -0.027 0.062 C29 QDL 25 QDL C30 C26 C 0 1 N N N 208.332 252.750 221.773 8.153 -0.568 -0.434 C30 QDL 26 QDL C31 C27 C 0 1 N N N 207.065 252.153 221.377 9.400 -0.087 0.002 C31 QDL 27 QDL C32 C28 C 0 1 N N N 209.084 253.546 220.743 8.086 -1.680 -1.448 C32 QDL 28 QDL C33 C29 C 0 1 N N N 206.493 252.234 220.175 10.546 -0.626 -0.492 C33 QDL 29 QDL C34 C30 C 0 1 N N N 205.234 251.653 219.755 11.800 -0.060 -0.151 C34 QDL 30 QDL C35 C31 C 0 1 N N N 205.354 250.434 218.832 12.825 -0.947 0.495 C35 QDL 31 QDL C36 C32 C 0 1 N N N 204.030 250.068 218.165 13.912 -0.098 1.158 C36 QDL 32 QDL C37 C33 C 0 1 N N R 202.852 250.215 219.109 14.406 0.940 0.143 C37 QDL 33 QDL C38 C34 C 0 1 N N N 202.751 251.649 219.589 13.280 1.943 -0.114 C38 QDL 34 QDL C39 C35 C 0 1 N N N 204.053 252.161 220.150 12.003 1.218 -0.424 C39 QDL 35 QDL C41 C36 C 0 1 N N N 205.827 249.211 219.626 13.459 -1.845 -0.568 C41 QDL 36 QDL C42 C37 C 0 1 N N N 206.361 250.711 217.710 12.147 -1.816 1.556 C42 QDL 37 QDL C43 C38 C 0 1 N N N 203.900 253.277 221.145 10.891 1.988 -1.089 C43 QDL 38 QDL C8 C39 C 0 1 N N N 219.297 257.714 235.464 -9.785 0.407 0.498 C8 QDL 39 QDL C9 C40 C 0 1 N N N 219.891 260.646 236.057 -11.399 -0.972 2.459 C9 QDL 40 QDL O12 O1 O 0 1 N N N 224.636 259.476 236.673 -15.362 0.021 -0.372 O12 QDL 41 QDL O40 O2 O 0 1 N N N 201.648 249.845 218.436 15.546 1.622 0.670 O40 QDL 42 QDL O7 O3 O 0 1 N N N 221.024 259.103 234.441 -11.316 -1.513 0.012 O7 QDL 43 QDL HC1B H1 H 0 0 N N N 222.710 257.803 237.552 -13.679 1.490 -1.645 HC1B QDL 44 QDL HC1A H2 H 0 0 N N N 223.850 257.035 236.396 -13.207 1.736 0.055 HC1A QDL 45 QDL HC2 H3 H 0 1 N N N 223.598 259.046 234.924 -13.735 -1.033 -1.098 HC2 QDL 46 QDL HC3B H4 H 0 0 N N N 222.602 261.056 235.788 -13.805 0.092 1.735 HC3B QDL 47 QDL HC3A H5 H 0 0 N N N 222.284 260.281 237.377 -13.970 -1.616 1.269 HC3A QDL 48 QDL H10C H6 H 0 0 N N N 220.905 256.244 237.485 -9.926 1.664 -1.653 H10C QDL 49 QDL H10A H7 H 0 0 N N N 220.445 255.447 235.942 -11.402 2.484 -2.217 H10A QDL 50 QDL H10B H8 H 0 0 N N N 222.078 255.177 236.640 -10.946 2.556 -0.498 H10B QDL 51 QDL H11C H9 H 0 0 N N N 223.063 255.823 234.523 -12.325 -1.122 -2.191 H11C QDL 52 QDL H11B H10 H 0 0 N N N 221.453 256.167 233.805 -12.208 0.335 -3.206 H11B QDL 53 QDL H11A H11 H 0 0 N N N 222.732 257.428 233.788 -10.728 -0.474 -2.637 H11A QDL 54 QDL HC13 H12 H 0 0 N N N 219.002 257.968 233.461 -8.706 -0.920 -0.715 HC13 QDL 55 QDL HC15 H13 H 0 0 N N N 217.185 257.492 232.230 -6.303 -0.974 -0.770 HC15 QDL 56 QDL HC16 H14 H 0 0 N N N 214.547 256.514 233.449 -4.960 1.101 1.119 HC16 QDL 57 QDL HC17 H15 H 0 0 N N N 215.848 256.179 230.744 -3.905 -1.034 -0.831 HC17 QDL 58 QDL H19C H16 H 0 0 N N N 217.148 256.852 236.389 -7.317 1.050 2.469 H19C QDL 59 QDL H19A H17 H 0 0 N N N 215.560 257.283 235.669 -6.430 2.061 1.303 H19A QDL 60 QDL H19B H18 H 0 0 N N N 216.232 255.632 235.441 -8.208 2.117 1.358 H19B QDL 61 QDL HC20 H19 H 0 0 N N N 214.627 255.291 229.093 -1.500 -1.101 -0.897 HC20 QDL 62 QDL H21A H20 H 0 0 N N N 212.947 255.807 232.916 -2.529 0.930 2.349 H21A QDL 63 QDL H21B H21 H 0 0 N N N 211.795 256.035 231.557 -1.643 1.941 1.182 H21B QDL 64 QDL H21C H22 H 0 0 N N N 212.335 254.382 232.009 -3.421 1.997 1.237 H21C QDL 65 QDL HC22 H23 H 0 0 N N N 211.733 254.305 229.518 -0.162 0.972 0.990 HC22 QDL 66 QDL HC23 H24 H 0 0 N N N 213.463 254.858 227.077 0.904 -1.168 -0.964 HC23 QDL 67 QDL HC24 H25 H 0 0 N N N 210.607 253.730 227.393 2.241 0.905 0.923 HC24 QDL 68 QDL HC26 H26 H 0 0 N N N 209.396 253.104 225.560 4.645 0.837 0.856 HC26 QDL 69 QDL HC27 H27 H 0 0 N N N 210.841 253.225 222.913 5.710 -1.303 -1.099 HC27 QDL 70 QDL H28C H28 H 0 0 N N N 213.448 254.492 225.177 3.271 -1.127 -2.323 H28C QDL 71 QDL H28A H29 H 0 0 N N N 212.902 253.201 224.054 4.162 -2.194 -1.212 H28A QDL 72 QDL H28B H30 H 0 0 N N N 212.299 254.882 223.853 2.384 -2.138 -1.156 H28B QDL 73 QDL HC29 H31 H 0 0 N N N 208.166 251.980 223.692 7.049 0.771 0.789 HC29 QDL 74 QDL HC31 H32 H 0 0 N N N 206.536 251.589 222.131 9.448 0.710 0.729 HC31 QDL 75 QDL H32A H33 H 0 0 N N N 210.015 253.932 221.185 8.068 -1.256 -2.452 H32A QDL 76 QDL H32B H34 H 0 0 N N N 209.325 252.901 219.885 8.960 -2.323 -1.341 H32B QDL 77 QDL H32C H35 H 0 0 N N N 208.462 254.388 220.405 7.182 -2.267 -1.285 H32C QDL 78 QDL HC33 H36 H 0 0 N N N 207.031 252.798 219.428 10.501 -1.485 -1.145 HC33 QDL 79 QDL H36B H37 H 0 0 N N N 203.875 250.729 217.300 13.500 0.409 2.030 H36B QDL 80 QDL H36A H38 H 0 0 N N N 204.082 249.024 217.824 14.741 -0.738 1.460 H36A QDL 81 QDL HC37 H39 H 0 0 N N N 203.012 249.561 219.979 14.673 0.442 -0.790 HC37 QDL 82 QDL H38B H40 H 0 0 N N N 202.457 252.285 218.741 13.139 2.562 0.773 H38B QDL 83 QDL H38A H41 H 0 0 N N N 201.982 251.705 220.374 13.548 2.580 -0.957 H38A QDL 84 QDL H41C H42 H 0 0 N N N 205.113 249.000 220.436 13.939 -1.228 -1.327 H41C QDL 85 QDL H41A H43 H 0 0 N N N 205.889 248.341 218.956 14.204 -2.490 -0.101 H41A QDL 86 QDL H41B H44 H 0 0 N N N 206.819 249.414 220.056 12.688 -2.459 -1.033 H41B QDL 87 QDL H42A H45 H 0 0 N N N 207.334 250.980 218.148 12.901 -2.398 2.085 H42A QDL 88 QDL H42C H46 H 0 0 N N N 206.475 249.810 217.089 11.617 -1.179 2.264 H42C QDL 89 QDL H42B H47 H 0 0 N N N 205.997 251.542 217.088 11.439 -2.491 1.074 H42B QDL 90 QDL H43A H48 H 0 0 N N N 204.892 253.589 221.502 10.197 2.352 -0.331 H43A QDL 91 QDL H43B H49 H 0 0 N N N 203.398 254.130 220.665 11.311 2.835 -1.633 H43B QDL 92 QDL H43C H50 H 0 0 N N N 203.297 252.929 221.996 10.362 1.336 -1.783 H43C QDL 93 QDL HC8 H51 H 0 1 N N N 218.860 257.391 236.397 -9.738 1.204 1.225 HC8 QDL 94 QDL HC9B H52 H 0 0 N N N 219.953 260.994 237.099 -12.095 -1.525 3.089 HC9B QDL 95 QDL HC9C H53 H 0 0 N N N 220.004 261.503 235.377 -10.454 -1.513 2.399 HC9C QDL 96 QDL HC9A H54 H 0 0 N N N 218.914 260.169 235.887 -11.226 0.015 2.887 HC9A QDL 97 QDL HO12 H55 H 0 0 N N N 225.314 258.835 236.495 -15.901 -0.740 -0.118 HO12 QDL 98 QDL HO40 H56 H 0 0 N N N 200.912 249.938 219.029 15.910 2.294 0.079 HO40 QDL 99 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QDL C42 C35 SING N N 1 QDL C36 C35 SING N N 2 QDL C36 C37 SING N N 3 QDL O40 C37 SING N N 4 QDL C35 C41 SING N N 5 QDL C35 C34 SING N N 6 QDL C37 C38 SING N N 7 QDL C38 C39 SING N N 8 QDL C34 C39 DOUB N N 9 QDL C34 C33 SING N N 10 QDL C39 C43 SING N N 11 QDL C33 C31 DOUB N E 12 QDL C32 C30 SING N N 13 QDL C31 C30 SING N N 14 QDL C30 C29 DOUB N E 15 QDL C29 C27 SING N N 16 QDL C27 C26 DOUB N E 17 QDL C28 C25 SING N N 18 QDL C26 C25 SING N N 19 QDL C25 C24 DOUB N E 20 QDL C24 C23 SING N N 21 QDL C23 C22 DOUB N E 22 QDL C22 C20 SING N N 23 QDL C20 C18 DOUB N E 24 QDL C18 C17 SING N N 25 QDL C18 C21 SING N N 26 QDL C17 C16 DOUB N E 27 QDL C16 C15 SING N N 28 QDL C15 C14 DOUB N E 29 QDL C14 C13 SING N N 30 QDL C14 C19 SING N N 31 QDL C11 C6 SING N N 32 QDL C13 C8 DOUB N E 33 QDL O7 C5 SING N N 34 QDL O7 C4 SING N N 35 QDL C8 C5 SING N N 36 QDL C5 C6 SING N N 37 QDL C5 C4 SING N N 38 QDL C6 C1 SING N N 39 QDL C6 C10 SING N N 40 QDL C4 C9 SING N N 41 QDL C4 C3 SING N N 42 QDL C2 C3 SING N N 43 QDL C2 C1 SING N N 44 QDL C2 O12 SING N N 45 QDL C1 HC1B SING N N 46 QDL C1 HC1A SING N N 47 QDL C2 HC2 SING N N 48 QDL C3 HC3B SING N N 49 QDL C3 HC3A SING N N 50 QDL C10 H10C SING N N 51 QDL C10 H10A SING N N 52 QDL C10 H10B SING N N 53 QDL C11 H11C SING N N 54 QDL C11 H11B SING N N 55 QDL C11 H11A SING N N 56 QDL C13 HC13 SING N N 57 QDL C15 HC15 SING N N 58 QDL C16 HC16 SING N N 59 QDL C17 HC17 SING N N 60 QDL C19 H19C SING N N 61 QDL C19 H19A SING N N 62 QDL C19 H19B SING N N 63 QDL C20 HC20 SING N N 64 QDL C21 H21A SING N N 65 QDL C21 H21B SING N N 66 QDL C21 H21C SING N N 67 QDL C22 HC22 SING N N 68 QDL C23 HC23 SING N N 69 QDL C24 HC24 SING N N 70 QDL C26 HC26 SING N N 71 QDL C27 HC27 SING N N 72 QDL C28 H28C SING N N 73 QDL C28 H28A SING N N 74 QDL C28 H28B SING N N 75 QDL C29 HC29 SING N N 76 QDL C31 HC31 SING N N 77 QDL C32 H32A SING N N 78 QDL C32 H32B SING N N 79 QDL C32 H32C SING N N 80 QDL C33 HC33 SING N N 81 QDL C36 H36B SING N N 82 QDL C36 H36A SING N N 83 QDL C37 HC37 SING N N 84 QDL C38 H38B SING N N 85 QDL C38 H38A SING N N 86 QDL C41 H41C SING N N 87 QDL C41 H41A SING N N 88 QDL C41 H41B SING N N 89 QDL C42 H42A SING N N 90 QDL C42 H42C SING N N 91 QDL C42 H42B SING N N 92 QDL C43 H43A SING N N 93 QDL C43 H43B SING N N 94 QDL C43 H43C SING N N 95 QDL C8 HC8 SING N N 96 QDL C9 HC9B SING N N 97 QDL C9 HC9C SING N N 98 QDL C9 HC9A SING N N 99 QDL O12 HO12 SING N N 100 QDL O40 HO40 SING N N 101 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QDL InChI InChI 1.06 "InChI=1S/C40H56O3/c1-29(17-13-19-31(3)21-22-36-33(5)25-34(41)26-37(36,6)7)15-11-12-16-30(2)18-14-20-32(4)23-24-40-38(8,9)27-35(42)28-39(40,10)43-40/h11-24,34-35,41-42H,25-28H2,1-10H3/b12-11+,17-13+,18-14+,22-21+,24-23+,29-15+,30-16+,31-19+,32-20+/t34-,35+,39-,40+/m1/s1" QDL InChIKey InChI 1.06 OFNSUWBAQRCHAV-OYQUVCAXSA-N QDL SMILES_CANONICAL CACTVS 3.385 "CC1=C(\C=C\C(C)=C\C=C\C(C)=C\C=C\C=C(C)\C=C\C=C(C)\C=C\[C@@]23O[C@]2(C)C[C@@H](O)CC3(C)C)C(C)(C)C[C@H](O)C1" QDL SMILES CACTVS 3.385 "CC1=C(C=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=C[C]23O[C]2(C)C[CH](O)CC3(C)C)C(C)(C)C[CH](O)C1" QDL SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC1=C(C(C[C@@H](C1)O)(C)C)/C=C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/[C@]23[C@](O2)(C[C@H](CC3(C)C)O)C)/C)/C" QDL SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1=C(C(CC(C1)O)(C)C)C=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC23C(CC(CC2(O3)C)O)(C)C)C)C" # _pdbx_chem_comp_identifier.comp_id QDL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "(1~{R},3~{S},6~{S})-1,5,5-trimethyl-6-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]-7-oxabicyclo[4.1.0]heptan-3-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QDL "Create component" 2022-10-25 PDBE QDL "Initial release" 2023-11-01 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id QDL _pdbx_chem_comp_synonyms.name "(1~{R},3~{S},6~{S})-1,5,5-trimethyl-6-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]-7-oxabicyclo[4.1.0]heptan-3-ol" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #