data_QEO # _chem_comp.id QEO _chem_comp.name "2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-beta-D-ribofuranosyl-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H23 N5 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-02-22 _chem_comp.pdbx_modified_date 2022-12-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 409.394 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QEO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7U1O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QEO "O5'" O1 O 0 1 N N N 74.456 12.871 67.066 3.556 4.611 0.660 "O5'" QEO 1 QEO "C5'" C1 C 0 1 N N N 74.102 11.515 67.347 4.133 3.688 -0.266 "C5'" QEO 2 QEO "C4'" C2 C 0 1 N N R 72.603 11.360 67.155 4.193 2.298 0.370 "C4'" QEO 3 QEO "C3'" C3 C 0 1 N N S 72.185 11.390 65.693 4.910 1.318 -0.579 "C3'" QEO 4 QEO "O3'" O2 O 0 1 N N N 71.170 10.390 65.552 6.077 0.780 0.047 "O3'" QEO 5 QEO "C2'" C4 C 0 1 N N R 71.679 12.819 65.476 3.866 0.204 -0.834 "C2'" QEO 6 QEO "O2'" O3 O 0 1 N N N 70.707 12.972 64.434 4.483 -1.085 -0.828 "O2'" QEO 7 QEO "O4'" O4 O 0 1 N N N 71.929 12.462 67.774 2.861 1.796 0.574 "O4'" QEO 8 QEO "C1'" C5 C 0 1 N N R 71.056 13.087 66.829 2.914 0.367 0.378 "C1'" QEO 9 QEO N2 N1 N 0 1 Y N N 70.937 14.464 67.334 1.584 -0.160 0.063 N2 QEO 10 QEO C10 C6 C 0 1 Y N N 70.014 14.721 68.254 1.212 -1.467 0.183 C10 QEO 11 QEO N3 N2 N 0 1 N N N 69.084 13.887 68.795 1.852 -2.577 0.578 N3 QEO 12 QEO C12 C7 C 0 1 N N N 68.217 14.342 69.703 1.245 -3.742 0.599 C12 QEO 13 QEO N5 N3 N 0 1 N N N 67.315 13.493 70.205 1.944 -4.848 1.013 N5 QEO 14 QEO N4 N4 N 0 1 N N N 68.229 15.614 70.123 -0.058 -3.887 0.225 N4 QEO 15 QEO C11 C8 C 0 1 N N N 69.121 16.505 69.653 -0.771 -2.814 -0.186 C11 QEO 16 QEO O3 O5 O 0 1 N N N 69.078 17.775 70.130 -1.937 -2.929 -0.523 O3 QEO 17 QEO C9 C9 C 0 1 Y N N 70.111 16.056 68.634 -0.130 -1.556 -0.213 C9 QEO 18 QEO C8 C10 C 0 1 Y N N 71.665 15.563 67.100 0.527 0.590 -0.389 C8 QEO 19 QEO C7 C11 C 0 1 Y N N 71.171 16.603 67.897 -0.540 -0.202 -0.582 C7 QEO 20 QEO C6 C12 C 0 1 N N N 71.751 18.007 67.900 -1.900 0.223 -1.072 C6 QEO 21 QEO N1 N5 N 0 1 N N N 70.876 18.999 68.536 -2.814 0.353 0.071 N1 QEO 22 QEO C1 C13 C 0 1 N N S 71.500 20.295 68.872 -4.152 0.768 -0.370 C1 QEO 23 QEO C2 C14 C 0 1 N N R 71.636 20.402 70.392 -4.898 1.490 0.777 C2 QEO 24 QEO O1 O6 O 0 1 N N N 72.873 21.050 70.710 -4.810 2.909 0.632 O1 QEO 25 QEO C3 C15 C 0 1 N N N 70.577 21.445 68.555 -5.003 -0.442 -0.679 C3 QEO 26 QEO C5 C16 C 0 1 N N N 69.977 21.928 69.638 -6.200 -0.317 -0.174 C5 QEO 27 QEO C4 C17 C 0 1 N N S 70.387 21.176 70.887 -6.347 0.998 0.557 C4 QEO 28 QEO O2 O7 O 0 1 N N N 70.574 22.019 72.050 -7.074 1.933 -0.243 O2 QEO 29 QEO H1 H1 H 0 1 N N N 75.392 12.985 67.182 3.487 5.515 0.323 H1 QEO 30 QEO H2 H2 H 0 1 N N N 74.636 10.842 66.660 3.523 3.649 -1.168 H2 QEO 31 QEO H3 H3 H 0 1 N N N 74.371 11.268 68.385 5.141 4.014 -0.523 H3 QEO 32 QEO H4 H4 H 0 1 N N N 72.277 10.410 67.604 4.720 2.348 1.322 H4 QEO 33 QEO H5 H5 H 0 1 N N N 73.049 11.189 65.043 5.174 1.815 -1.512 H5 QEO 34 QEO H6 H6 H 0 1 N N N 71.549 9.531 65.698 6.739 1.444 0.281 H6 QEO 35 QEO H7 H7 H 0 1 N N N 72.534 13.493 65.319 3.336 0.375 -1.771 H7 QEO 36 QEO H8 H8 H 0 1 N N N 70.451 13.885 64.370 5.154 -1.203 -1.515 H8 QEO 37 QEO H9 H9 H 0 1 N N N 70.068 12.605 66.862 3.324 -0.129 1.257 H9 QEO 38 QEO H10 H10 H 0 1 N N N 67.300 12.541 69.899 2.872 -4.762 1.283 H10 QEO 39 QEO H11 H11 H 0 1 N N N 66.655 13.810 70.886 1.511 -5.715 1.035 H11 QEO 40 QEO H12 H12 H 0 1 N N N 67.558 15.909 70.803 -0.475 -4.762 0.253 H12 QEO 41 QEO H13 H13 H 0 1 N N N 72.494 15.635 66.412 0.551 1.656 -0.566 H13 QEO 42 QEO H14 H14 H 0 1 N N N 72.708 17.988 68.442 -1.818 1.183 -1.582 H14 QEO 43 QEO H15 H15 H 0 1 N N N 71.926 18.314 66.858 -2.287 -0.524 -1.764 H15 QEO 44 QEO H16 H16 H 0 1 N N N 70.115 19.179 67.913 -2.857 -0.505 0.599 H16 QEO 45 QEO H18 H18 H 0 1 N N N 72.476 20.418 68.379 -4.080 1.416 -1.243 H18 QEO 46 QEO H19 H19 H 0 1 N N N 71.615 19.390 70.823 -4.520 1.173 1.749 H19 QEO 47 QEO H20 H20 H 0 1 N N N 72.962 21.119 71.653 -5.263 3.404 1.329 H20 QEO 48 QEO H21 H21 H 0 1 N N N 70.421 21.833 67.559 -4.665 -1.298 -1.244 H21 QEO 49 QEO H23 H23 H 0 1 N N N 69.282 22.755 69.629 -6.982 -1.055 -0.266 H23 QEO 50 QEO H25 H25 H 0 1 N N N 69.605 20.435 71.109 -6.846 0.846 1.514 H25 QEO 51 QEO H26 H26 H 0 1 N N N 70.829 21.483 72.792 -7.991 1.676 -0.413 H26 QEO 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QEO "O2'" "C2'" SING N N 1 QEO "C2'" "C3'" SING N N 2 QEO "C2'" "C1'" SING N N 3 QEO "O3'" "C3'" SING N N 4 QEO "C3'" "C4'" SING N N 5 QEO "C1'" N2 SING N N 6 QEO "C1'" "O4'" SING N N 7 QEO "O5'" "C5'" SING N N 8 QEO C8 N2 SING Y N 9 QEO C8 C7 DOUB Y N 10 QEO "C4'" "C5'" SING N N 11 QEO "C4'" "O4'" SING N N 12 QEO N2 C10 SING Y N 13 QEO C7 C6 SING N N 14 QEO C7 C9 SING Y N 15 QEO C6 N1 SING N N 16 QEO C10 C9 DOUB Y N 17 QEO C10 N3 SING N N 18 QEO N1 C1 SING N N 19 QEO C3 C1 SING N N 20 QEO C3 C5 DOUB N N 21 QEO C9 C11 SING N N 22 QEO N3 C12 DOUB N N 23 QEO C1 C2 SING N N 24 QEO C5 C4 SING N N 25 QEO C11 N4 SING N N 26 QEO C11 O3 DOUB N N 27 QEO C12 N4 SING N N 28 QEO C12 N5 SING N N 29 QEO C2 O1 SING N N 30 QEO C2 C4 SING N N 31 QEO C4 O2 SING N N 32 QEO "O5'" H1 SING N N 33 QEO "C5'" H2 SING N N 34 QEO "C5'" H3 SING N N 35 QEO "C4'" H4 SING N N 36 QEO "C3'" H5 SING N N 37 QEO "O3'" H6 SING N N 38 QEO "C2'" H7 SING N N 39 QEO "O2'" H8 SING N N 40 QEO "C1'" H9 SING N N 41 QEO N5 H10 SING N N 42 QEO N5 H11 SING N N 43 QEO N4 H12 SING N N 44 QEO C8 H13 SING N N 45 QEO C6 H14 SING N N 46 QEO C6 H15 SING N N 47 QEO N1 H16 SING N N 48 QEO C1 H18 SING N N 49 QEO C2 H19 SING N N 50 QEO O1 H20 SING N N 51 QEO C3 H21 SING N N 52 QEO C5 H23 SING N N 53 QEO C4 H25 SING N N 54 QEO O2 H26 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QEO SMILES ACDLabs 12.01 "OC1C=CC(NCc2cn(c3N=C(N)NC(=O)c32)C2OC(CO)C(O)C2O)C1O" QEO InChI InChI 1.03 "InChI=1S/C17H23N5O7/c18-17-20-14-10(15(28)21-17)6(3-19-7-1-2-8(24)11(7)25)4-22(14)16-13(27)12(26)9(5-23)29-16/h1-2,4,7-9,11-13,16,19,23-27H,3,5H2,(H3,18,20,21,28)/t7-,8-,9+,11+,12+,13+,16+/m0/s1" QEO InChIKey InChI 1.03 QQXQGKSPIMGUIZ-AEZJAUAXSA-N QEO SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cc(CN[C@H]3C=C[C@H](O)[C@@H]3O)c2C(=O)N1)[C@@H]4O[C@H](CO)[C@@H](O)[C@H]4O" QEO SMILES CACTVS 3.385 "NC1=Nc2n(cc(CN[CH]3C=C[CH](O)[CH]3O)c2C(=O)N1)[CH]4O[CH](CO)[CH](O)[CH]4O" QEO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(c2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N)CN[C@H]4C=C[C@@H]([C@@H]4O)O" QEO SMILES "OpenEye OEToolkits" 2.0.7 "c1c(c2c(n1C3C(C(C(O3)CO)O)O)N=C(NC2=O)N)CNC4C=CC(C4O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier QEO "SYSTEMATIC NAME" ACDLabs 12.01 "2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-beta-D-ribofuranosyl-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one" QEO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-azanyl-5-[[[(1~{S},4~{S},5~{R})-4,5-bis(oxidanyl)cyclopent-2-en-1-yl]amino]methyl]-7-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-3~{H}-pyrrolo[2,3-d]pyrimidin-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QEO "Create component" 2022-02-22 RCSB QEO "Initial release" 2022-12-21 RCSB #