data_QF2 # _chem_comp.id QF2 _chem_comp.name "6-[[cyclopropyl-[(7-methoxy-1,3-benzodioxol-5-yl)methyl]amino]methyl]-1~{H}-pyrimidine-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H19 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-12 _chem_comp.pdbx_modified_date 2020-07-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 345.350 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QF2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6ZCM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QF2 C10 C1 C 0 1 Y N N -24.751 26.726 -26.890 -1.108 -0.164 0.714 C10 QF2 1 QF2 N12 N1 N 0 1 N N N -23.463 24.782 -26.406 0.714 -1.493 -0.192 N12 QF2 2 QF2 C13 C2 C 0 1 N N N -23.365 25.047 -24.946 2.090 -1.965 0.006 C13 QF2 3 QF2 C20 C3 C 0 1 N N N -22.351 28.604 -23.977 4.569 0.610 1.227 C20 QF2 4 QF2 C22 C4 C 0 1 N N N -23.193 23.389 -26.700 -0.164 -2.591 -0.618 C22 QF2 5 QF2 C24 C5 C 0 1 N N N -22.367 23.267 -27.972 -1.104 -2.327 -1.796 C24 QF2 6 QF2 C01 C6 C 0 1 N N N -26.320 30.157 -24.195 -4.585 -2.263 1.147 C01 QF2 7 QF2 C03 C7 C 0 1 Y N N -25.750 28.690 -25.962 -3.502 -0.225 0.575 C03 QF2 8 QF2 C04 C8 C 0 1 Y N N -24.728 29.474 -26.534 -3.512 1.099 0.156 C04 QF2 9 QF2 C06 C9 C 0 1 N N N -23.090 30.965 -26.813 -3.933 3.016 -0.911 C06 QF2 10 QF2 C08 C10 C 0 1 Y N N -23.723 28.877 -27.260 -2.313 1.790 0.017 C08 QF2 11 QF2 C09 C11 C 0 1 Y N N -23.730 27.487 -27.451 -1.113 1.154 0.298 C09 QF2 12 QF2 C11 C12 C 0 1 N N N -24.731 25.191 -27.056 0.199 -0.849 1.024 C11 QF2 13 QF2 C14 C13 C 0 1 N N N -22.572 26.367 -24.795 3.024 -0.784 0.062 C14 QF2 14 QF2 C16 C14 C 0 1 N N N -20.757 27.640 -25.339 4.023 1.070 -0.998 C16 QF2 15 QF2 C19 C15 C 0 1 N N N -23.088 27.425 -24.047 3.697 -0.505 1.199 C19 QF2 16 QF2 C23 C16 C 0 1 N N N -21.739 22.930 -26.611 0.116 -3.232 -1.979 C23 QF2 17 QF2 C25 C17 C 0 1 Y N N -25.757 27.315 -26.133 -2.297 -0.854 0.853 C25 QF2 18 QF2 N15 N2 N 0 1 N N N -21.424 26.508 -25.440 3.195 0.010 -1.039 N15 QF2 19 QF2 N17 N3 N 0 1 N N N -21.199 28.659 -24.627 4.705 1.372 0.122 N17 QF2 20 QF2 O02 O1 O 0 1 N N N -26.775 29.292 -25.209 -4.672 -0.905 0.713 O02 QF2 21 QF2 O05 O2 O 0 1 N N N -24.464 30.869 -26.523 -4.540 1.936 -0.176 O05 QF2 22 QF2 O07 O3 O 0 1 N N N -22.850 29.899 -27.702 -2.587 3.060 -0.402 O07 QF2 23 QF2 O18 O4 O 0 1 N N N -19.714 27.748 -25.891 4.156 1.765 -1.986 O18 QF2 24 QF2 O21 O5 O 0 1 N N N -22.740 29.535 -23.342 5.186 0.883 2.241 O21 QF2 25 QF2 H2 H2 H 0 1 N N N -24.369 25.154 -24.510 2.152 -2.523 0.941 H2 QF2 26 QF2 H3 H3 H 0 1 N N N -22.834 24.224 -24.445 2.374 -2.614 -0.823 H3 QF2 27 QF2 H4 H4 H 0 1 N N N -23.978 22.639 -26.524 -0.526 -3.240 0.179 H4 QF2 28 QF2 H5 H5 H 0 1 N N N -22.582 22.464 -28.693 -2.084 -2.803 -1.774 H5 QF2 29 QF2 H6 H6 H 0 1 N N N -22.054 24.172 -28.514 -1.071 -1.339 -2.255 H6 QF2 30 QF2 H7 H7 H 0 1 N N N -27.182 30.581 -23.660 -5.587 -2.687 1.215 H7 QF2 31 QF2 H8 H8 H 0 1 N N N -25.691 29.595 -23.489 -3.996 -2.837 0.432 H8 QF2 32 QF2 H9 H9 H 0 1 N N N -25.731 30.970 -24.644 -4.108 -2.302 2.126 H9 QF2 33 QF2 H10 H10 H 0 1 N N N -22.489 30.853 -25.898 -3.932 2.800 -1.979 H10 QF2 34 QF2 H11 H11 H 0 1 N N N -22.858 31.929 -27.288 -4.452 3.954 -0.711 H11 QF2 35 QF2 H12 H12 H 0 1 N N N -22.950 27.012 -28.028 -0.182 1.690 0.191 H12 QF2 36 QF2 H13 H13 H 0 1 N N N -25.595 24.731 -26.554 0.920 -0.112 1.378 H13 QF2 37 QF2 H14 H14 H 0 1 N N N -24.734 24.912 -28.120 0.040 -1.602 1.795 H14 QF2 38 QF2 H15 H15 H 0 1 N N N -24.035 27.332 -23.535 3.572 -1.124 2.075 H15 QF2 39 QF2 H17 H17 H 0 1 N N N -21.505 21.886 -26.355 0.952 -2.839 -2.558 H17 QF2 40 QF2 H18 H18 H 0 1 N N N -20.977 23.594 -26.176 -0.061 -4.303 -2.077 H18 QF2 41 QF2 H19 H19 H 0 1 N N N -26.532 26.710 -25.685 -2.289 -1.883 1.179 H19 QF2 42 QF2 H20 H20 H 0 1 N N N -20.650 29.494 -24.577 5.298 2.139 0.135 H20 QF2 43 QF2 H1 H1 H 0 1 N N N -21.066 25.761 -26.000 2.712 -0.191 -1.856 H1 QF2 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QF2 C24 C22 SING N N 1 QF2 C24 C23 SING N N 2 QF2 O07 C08 SING N N 3 QF2 O07 C06 SING N N 4 QF2 C09 C08 DOUB Y N 5 QF2 C09 C10 SING Y N 6 QF2 C08 C04 SING Y N 7 QF2 C11 C10 SING N N 8 QF2 C11 N12 SING N N 9 QF2 C10 C25 DOUB Y N 10 QF2 C06 O05 SING N N 11 QF2 C22 C23 SING N N 12 QF2 C22 N12 SING N N 13 QF2 C04 O05 SING N N 14 QF2 C04 C03 DOUB Y N 15 QF2 N12 C13 SING N N 16 QF2 C25 C03 SING Y N 17 QF2 C03 O02 SING N N 18 QF2 O18 C16 DOUB N N 19 QF2 N15 C16 SING N N 20 QF2 N15 C14 SING N N 21 QF2 C16 N17 SING N N 22 QF2 O02 C01 SING N N 23 QF2 C13 C14 SING N N 24 QF2 C14 C19 DOUB N N 25 QF2 N17 C20 SING N N 26 QF2 C19 C20 SING N N 27 QF2 C20 O21 DOUB N N 28 QF2 C13 H2 SING N N 29 QF2 C13 H3 SING N N 30 QF2 C22 H4 SING N N 31 QF2 C24 H5 SING N N 32 QF2 C24 H6 SING N N 33 QF2 C01 H7 SING N N 34 QF2 C01 H8 SING N N 35 QF2 C01 H9 SING N N 36 QF2 C06 H10 SING N N 37 QF2 C06 H11 SING N N 38 QF2 C09 H12 SING N N 39 QF2 C11 H13 SING N N 40 QF2 C11 H14 SING N N 41 QF2 C19 H15 SING N N 42 QF2 C23 H17 SING N N 43 QF2 C23 H18 SING N N 44 QF2 C25 H19 SING N N 45 QF2 N17 H20 SING N N 46 QF2 N15 H1 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QF2 InChI InChI 1.03 "InChI=1S/C17H19N3O5/c1-23-13-4-10(5-14-16(13)25-9-24-14)7-20(12-2-3-12)8-11-6-15(21)19-17(22)18-11/h4-6,12H,2-3,7-9H2,1H3,(H2,18,19,21,22)" QF2 InChIKey InChI 1.03 PUMQGUSCXBWFJA-UHFFFAOYSA-N QF2 SMILES_CANONICAL CACTVS 3.385 "COc1cc(CN(CC2=CC(=O)NC(=O)N2)C3CC3)cc4OCOc14" QF2 SMILES CACTVS 3.385 "COc1cc(CN(CC2=CC(=O)NC(=O)N2)C3CC3)cc4OCOc14" QF2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc(cc2c1OCO2)CN(CC3=CC(=O)NC(=O)N3)C4CC4" QF2 SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc(cc2c1OCO2)CN(CC3=CC(=O)NC(=O)N3)C4CC4" # _pdbx_chem_comp_identifier.comp_id QF2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-[[cyclopropyl-[(7-methoxy-1,3-benzodioxol-5-yl)methyl]amino]methyl]-1~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QF2 "Create component" 2020-06-12 PDBE QF2 "Initial release" 2020-07-29 RCSB ##