data_QII # _chem_comp.id QII _chem_comp.name "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[2-[(2~{R})-pyrrolidin-2-yl]ethyl]amino]-2-azanyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H32 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-29 _chem_comp.pdbx_modified_date 2024-09-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 464.519 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QII _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QDI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QII N3 N1 N 0 1 Y N N N N N -35.180 -11.662 -14.392 4.956 1.477 1.151 N3 QII 1 QII C16 C1 C 0 1 N N N N N N -36.886 -4.226 -11.356 -1.732 -1.495 -0.579 C16 QII 2 QII C14 C2 C 0 1 N N N N N N -34.209 -0.265 -17.457 -7.679 1.782 0.942 C14 QII 3 QII C12 C3 C 0 1 N N N N N N -33.332 -1.166 -15.448 -6.795 -0.269 1.830 C12 QII 4 QII C9 C4 C 0 1 N N N N N N -34.734 -3.239 -13.745 -3.693 0.631 -0.292 C9 QII 5 QII C15 C5 C 0 1 N N N N N N -36.754 -4.211 -12.882 -1.704 -0.463 0.550 C15 QII 6 QII N2 N2 N 0 1 Y N N N N N -34.983 -13.393 -16.057 6.771 0.081 1.462 N2 QII 7 QII C13 C6 C 0 1 N N N N N N -33.067 -0.104 -16.471 -8.144 0.467 1.616 C13 QII 8 QII C11 C7 C 0 1 N N R N N N -34.846 -1.360 -15.446 -5.979 0.130 0.582 C11 QII 9 QII C10 C8 C 0 1 N N N N N N -35.248 -2.784 -15.122 -4.516 0.358 0.968 C10 QII 10 QII C8 C9 C 0 1 N N N N N N -35.140 -5.580 -14.119 -1.507 1.341 -1.054 C8 QII 11 QII O1 O1 O 0 1 N N N N N N -34.943 -7.986 -14.266 0.634 0.914 0.041 O1 QII 12 QII N1 N3 N 0 1 N N N N N N -33.523 -13.256 -17.843 6.745 -2.199 0.858 N1 QII 13 QII C7 C10 C 0 1 N N R N N N -35.005 -6.866 -13.336 -0.200 1.944 -0.533 C7 QII 14 QII C3 C11 C 0 1 Y N N N N N -34.264 -10.993 -15.112 4.234 0.493 0.625 C3 QII 15 QII C1 C12 C 0 1 Y N N N N N -34.051 -12.693 -16.764 6.128 -0.964 0.951 C1 QII 16 QII C2 C13 C 0 1 Y N N N N N -35.490 -12.824 -14.950 6.190 1.263 1.554 C2 QII 17 QII C4 C14 C 0 1 Y N N N N N -33.635 -11.450 -16.261 4.807 -0.785 0.506 C4 QII 18 QII C5 C15 C 0 1 Y N N N N N -32.766 -9.544 -15.816 2.789 -0.906 -0.278 C5 QII 19 QII C6 C16 C 0 1 N N R N N N -34.077 -8.941 -13.709 1.971 1.461 0.035 C6 QII 20 QII N5 N4 N 0 1 Y N N N N N -33.658 -9.807 -14.791 2.962 0.385 0.123 N5 QII 21 QII N4 N5 N 0 1 Y N N N N N -32.710 -10.516 -16.701 3.872 -1.591 -0.053 N4 QII 22 QII N6 N6 N 0 1 N N N N N N -35.349 -4.435 -13.256 -2.280 0.801 0.073 N6 QII 23 QII N7 N7 N 0 1 N N N N N N -35.335 -0.938 -16.784 -6.561 1.381 0.062 N7 QII 24 QII C17 C17 C 0 1 N N S N N N -38.236 -3.771 -10.817 -1.288 -2.855 -0.038 C17 QII 25 QII N8 N8 N 0 1 N N N N N N -39.314 -4.630 -11.378 0.094 -2.761 0.450 N8 QII 26 QII C18 C18 C 0 1 N N N N N N -38.517 -2.297 -11.145 -1.363 -3.882 -1.138 C18 QII 27 QII O2 O2 O 0 1 N N N N N N -39.412 -2.060 -11.990 -0.361 -4.209 -1.729 O2 QII 28 QII O3 O3 O 0 1 N N N N N N -37.816 -1.443 -10.542 -2.544 -4.433 -1.462 O3 QII 29 QII C19 C19 C 0 1 N N S N N N -33.747 -6.952 -12.455 0.630 2.518 -1.702 C19 QII 30 QII O4 O4 O 0 1 N N N N N N -34.057 -7.167 -11.073 0.441 3.931 -1.803 O4 QII 31 QII C20 C20 C 0 1 N N R N N N -32.961 -8.117 -13.071 2.091 2.193 -1.319 C20 QII 32 QII O5 O5 O 0 1 N N N N N N -32.118 -8.872 -12.219 2.850 3.395 -1.173 O5 QII 33 QII H23 H1 H 0 1 N N N N N N -36.711 -5.255 -11.009 -2.745 -1.573 -0.974 H23 QII 34 QII H24 H2 H 0 1 N N N N N N -36.113 -3.563 -10.941 -1.055 -1.182 -1.374 H24 QII 35 QII H18 H3 H 0 1 N N N N N N -34.531 0.725 -17.813 -8.489 2.214 0.354 H18 QII 36 QII H19 H4 H 0 1 N N N N N N -33.875 -0.871 -18.312 -7.335 2.494 1.692 H19 QII 37 QII H15 H5 H 0 1 N N N N N N -32.985 -0.840 -14.456 -6.305 0.081 2.739 H15 QII 38 QII H14 H6 H 0 1 N N N N N N -32.825 -2.102 -15.725 -6.946 -1.348 1.866 H14 QII 39 QII H9 H7 H 0 1 N N N N N N -34.925 -2.432 -13.022 -3.792 -0.210 -0.979 H9 QII 40 QII H10 H8 H 0 1 N N N N N N -33.651 -3.414 -13.822 -4.056 1.539 -0.774 H10 QII 41 QII H21 H9 H 0 1 N N N N N N -37.085 -3.236 -13.269 -2.286 -0.832 1.394 H21 QII 42 QII H22 H10 H 0 1 N N N N N N -37.379 -5.008 -13.312 -0.673 -0.296 0.864 H22 QII 43 QII H16 H11 H 0 1 N N N N N N -33.082 0.896 -16.012 -8.634 0.669 2.568 H16 QII 44 QII H17 H12 H 0 1 N N N N N N -32.097 -0.267 -16.964 -8.798 -0.101 0.954 H17 QII 45 QII H13 H13 H 0 1 N N N N N N -35.278 -0.695 -14.684 -6.048 -0.653 -0.172 H13 QII 46 QII H11 H14 H 0 1 N N N N N N -34.834 -3.452 -15.892 -4.130 -0.529 1.469 H11 QII 47 QII H12 H15 H 0 1 N N N N N N -36.346 -2.852 -15.129 -4.446 1.214 1.640 H12 QII 48 QII H7 H16 H 0 1 N N N N N N -34.221 -5.422 -14.702 -2.088 2.114 -1.556 H7 QII 49 QII H8 H17 H 0 1 N N N N N N -35.997 -5.670 -14.803 -1.282 0.539 -1.757 H8 QII 50 QII H2 H18 H 0 1 N N N N N N -33.920 -14.165 -17.974 7.657 -2.310 1.168 H2 QII 51 QII H1 H19 H 0 1 N N N N N N -33.717 -12.689 -18.644 6.265 -2.954 0.483 H1 QII 52 QII H6 H20 H 0 1 N N N N N N -35.888 -6.978 -12.689 -0.408 2.719 0.205 H6 QII 53 QII H3 H21 H 0 1 N N N N N N -36.257 -13.392 -14.445 6.749 2.085 1.977 H3 QII 54 QII H4 H22 H 0 1 N N N N N N -32.180 -8.639 -15.882 1.885 -1.303 -0.718 H4 QII 55 QII H5 H23 H 0 1 N N N N N N -34.586 -9.525 -12.928 2.098 2.163 0.859 H5 QII 56 QII H20 H25 H 0 1 N N N N N N -36.104 -0.307 -16.686 -6.874 1.265 -0.891 H20 QII 57 QII H25 H27 H 0 1 N N N N N N -38.227 -3.883 -9.723 -1.943 -3.151 0.781 H25 QII 58 QII H26 H28 H 0 1 N N N N N N -40.199 -4.329 -11.023 0.709 -2.410 -0.269 H26 QII 59 QII H27 H29 H 0 1 N N N N N N -39.313 -4.557 -12.375 0.146 -2.190 1.280 H27 QII 60 QII H35 H31 H 0 1 N N N N N N -38.066 -0.571 -10.824 -2.542 -5.087 -2.174 H35 QII 61 QII H29 H32 H 0 1 N N N N N N -33.165 -6.026 -12.576 0.360 2.030 -2.638 H29 QII 62 QII H30 H33 H 0 1 N N N N N N -33.252 -7.213 -10.571 0.940 4.344 -2.521 H30 QII 63 QII H31 H34 H 0 1 N N N N N N -32.354 -7.702 -13.889 2.546 1.543 -2.067 H31 QII 64 QII H32 H35 H 0 1 N N N N N N -31.692 -9.558 -12.720 2.957 3.896 -1.993 H32 QII 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QII N1 C1 SING N N 1 QII C1 N2 DOUB Y N 2 QII N2 C2 SING Y N 3 QII C2 N3 DOUB Y N 4 QII N3 C3 SING Y N 5 QII C3 C4 DOUB Y N 6 QII C4 N4 SING Y N 7 QII N4 C5 DOUB Y N 8 QII C5 N5 SING Y N 9 QII N5 C6 SING N N 10 QII C6 O1 SING N N 11 QII O1 C7 SING N N 12 QII C7 C8 SING N N 13 QII C8 N6 SING N N 14 QII N6 C9 SING N N 15 QII C9 C10 SING N N 16 QII C10 C11 SING N N 17 QII C11 C12 SING N N 18 QII C12 C13 SING N N 19 QII C13 C14 SING N N 20 QII C14 N7 SING N N 21 QII N6 C15 SING N N 22 QII C15 C16 SING N N 23 QII C16 C17 SING N N 24 QII C17 N8 SING N N 25 QII C17 C18 SING N N 26 QII C18 O2 DOUB N N 27 QII C18 O3 SING N N 28 QII C7 C19 SING N N 29 QII C19 O4 SING N N 30 QII C19 C20 SING N N 31 QII C20 O5 SING N N 32 QII C1 C4 SING Y N 33 QII C6 C20 SING N N 34 QII C3 N5 SING Y N 35 QII C11 N7 SING N N 36 QII C16 H23 SING N N 37 QII C16 H24 SING N N 38 QII C14 H18 SING N N 39 QII C14 H19 SING N N 40 QII C12 H15 SING N N 41 QII C12 H14 SING N N 42 QII C9 H9 SING N N 43 QII C9 H10 SING N N 44 QII C15 H21 SING N N 45 QII C15 H22 SING N N 46 QII C13 H16 SING N N 47 QII C13 H17 SING N N 48 QII C11 H13 SING N N 49 QII C10 H11 SING N N 50 QII C10 H12 SING N N 51 QII C8 H7 SING N N 52 QII C8 H8 SING N N 53 QII N1 H2 SING N N 54 QII N1 H1 SING N N 55 QII C7 H6 SING N N 56 QII C2 H3 SING N N 57 QII C5 H4 SING N N 58 QII C6 H5 SING N N 59 QII N7 H20 SING N N 60 QII C17 H25 SING N N 61 QII N8 H26 SING N N 62 QII N8 H27 SING N N 63 QII O3 H35 SING N N 64 QII C19 H29 SING N N 65 QII O4 H30 SING N N 66 QII C20 H31 SING N N 67 QII O5 H32 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QII InChI InChI 1.06 "InChI=1S/C20H32N8O5/c21-12(20(31)32)4-7-27(6-3-11-2-1-5-23-11)8-13-15(29)16(30)19(33-13)28-10-26-14-17(22)24-9-25-18(14)28/h9-13,15-16,19,23,29-30H,1-8,21H2,(H,31,32)(H2,22,24,25)/t11-,12+,13-,15-,16-,19-/m1/s1" QII InChIKey InChI 1.06 HVEHZOYFHBQABO-DAEWCUBLSA-N QII SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCN(CC[C@H]1CCCN1)C[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)C(O)=O" QII SMILES CACTVS 3.385 "N[CH](CCN(CC[CH]1CCCN1)C[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)C(O)=O" QII SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CC[C@H]4CCCN4)CC[C@@H](C(=O)O)N)O)O)N" QII SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCC4CCCN4)CCC(C(=O)O)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id QII _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[2-[(2~{R})-pyrrolidin-2-yl]ethyl]amino]-2-azanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QII "Create component" 2023-08-29 PDBE QII "Initial release" 2024-09-11 RCSB #