data_QJN # _chem_comp.id QJN _chem_comp.name "(1~{R},2~{S},4~{R},5~{S},6~{R})-6-[(2~{S},3~{R},4~{R},5~{S},6~{R})-5-heptoxy-6-(hydroxymethyl)-3,4-bis(oxidanyl)oxan-2-yl]oxy-5-(hydroxymethyl)cyclohexane-1,2,4-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H38 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-18 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 438.510 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QJN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YQC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QJN C2 C1 C 0 1 N N R N N N -3.914 18.725 -43.221 0.514 2.517 0.113 C2 QJN 1 QJN C4 C2 C 0 1 N N S N N N -3.308 20.647 -44.625 -1.178 0.878 -0.709 C4 QJN 2 QJN C5 C3 C 0 1 N N R N N N -3.656 21.489 -43.430 -0.028 0.068 -1.314 C5 QJN 3 QJN C6 C4 C 0 1 N N N N N N -4.093 22.915 -43.787 -0.515 -0.642 -2.579 C6 QJN 4 QJN C8 C5 C 0 1 N N N N N N -2.571 21.937 -46.584 -3.535 0.584 -0.388 C8 QJN 5 QJN "C1'" C6 C 0 1 N N N N N N -3.941 19.307 -36.958 5.848 -1.197 0.726 "C1'" QJN 6 QJN "C2'" C7 C 0 1 N N S N N N -3.536 18.108 -37.824 5.769 0.157 0.018 "C2'" QJN 7 QJN "O2'" O1 O 0 1 N N N N N N -2.692 17.186 -37.150 6.900 0.951 0.381 "O2'" QJN 8 QJN "C3'" C8 C 0 1 N N R N N N -2.890 18.565 -39.162 4.485 0.877 0.436 "C3'" QJN 9 QJN "O3'" O2 O 0 1 N N N N N N -2.585 17.446 -39.982 4.412 2.142 -0.225 "O3'" QJN 10 QJN "C4'" C9 C 0 1 N N R N N N -3.843 19.528 -39.785 3.274 0.027 0.047 "C4'" QJN 11 QJN "C5'" C10 C 0 1 N N S N N N -3.944 20.794 -38.988 3.353 -1.327 0.755 "C5'" QJN 12 QJN "O6'" O3 O 0 1 N N N N N N -5.999 21.488 -40.149 2.150 -3.391 1.120 "O6'" QJN 13 QJN "C6'" C11 C 0 1 N N N N N N -4.715 21.904 -39.684 2.141 -2.177 0.366 "C6'" QJN 14 QJN "C7'" C12 C 0 1 N N R N N N -4.630 20.413 -37.657 4.636 -2.047 0.337 "C7'" QJN 15 QJN O1 O4 O 0 1 N N N N N N -3.426 19.818 -41.174 2.075 0.700 0.438 O1 QJN 16 QJN C1 C13 C 0 1 N N S N N N -4.431 19.661 -42.150 1.598 1.643 -0.524 C1 QJN 17 QJN O5 O5 O 0 1 N N N N N N -4.766 20.932 -42.707 1.050 0.946 -1.644 O5 QJN 18 QJN O6 O6 O 0 1 N N N N N N -5.250 22.883 -44.637 0.522 -1.489 -3.078 O6 QJN 19 QJN O4 O7 O 0 1 N N N N N N -2.220 21.266 -45.343 -2.234 -0.004 -0.325 O4 QJN 20 QJN C3 C14 C 0 1 N N R N N N -2.837 19.289 -44.109 -0.668 1.633 0.522 C3 QJN 21 QJN O3 O8 O 0 1 N N N N N N -2.532 18.396 -45.197 -1.715 2.449 1.050 O3 QJN 22 QJN O2 O9 O 0 1 N N N N N N -3.453 17.486 -42.646 1.044 3.171 1.267 O2 QJN 23 QJN O7 O10 O 0 1 N N N N N N -4.743 21.568 -36.816 4.710 -3.312 0.998 O7 QJN 24 QJN C9 C15 C 0 1 N N N N N N -1.343 22.035 -47.448 -4.582 -0.446 0.042 C9 QJN 25 QJN C10 C16 C 0 1 N N N N N N -1.001 20.680 -48.101 -5.974 0.184 -0.025 C10 QJN 26 QJN C11 C17 C 0 1 N N N N N N 0.370 20.632 -48.821 -7.021 -0.846 0.405 C11 QJN 27 QJN C12 C18 C 0 1 N N N N N N 0.353 21.398 -50.158 -8.414 -0.216 0.337 C12 QJN 28 QJN C13 C19 C 0 1 N N N N N N 1.479 21.022 -51.140 -9.460 -1.246 0.768 C13 QJN 29 QJN C14 C20 C 0 1 N N N N N N 2.744 20.570 -50.439 -10.853 -0.616 0.700 C14 QJN 30 QJN H2 H1 H 0 1 N N N N N N -4.769 18.489 -43.872 0.179 3.264 -0.607 H2 QJN 31 QJN H4 H2 H 0 1 N N N N N N -4.189 20.519 -45.271 -1.548 1.591 -1.446 H4 QJN 32 QJN H5 H3 H 0 1 N N N N N N -2.777 21.550 -42.771 0.314 -0.673 -0.591 H5 QJN 33 QJN H62 H4 H 0 1 N N N N N N -3.272 23.426 -44.311 -1.393 -1.242 -2.344 H62 QJN 34 QJN H61 H5 H 0 1 N N N N N N -4.336 23.462 -42.864 -0.773 0.100 -3.335 H61 QJN 35 QJN H81 H6 H 0 1 N N N N N N -2.950 22.946 -46.364 -3.577 1.445 0.278 H81 QJN 36 QJN H8 H7 H 0 1 N N N N N N -3.347 21.361 -47.109 -3.739 0.905 -1.410 H8 QJN 37 QJN "H1'1" H8 H 0 0 N N N N N N -4.612 18.939 -36.168 6.762 -1.710 0.428 "H1'1" QJN 38 QJN H6 H9 H 0 1 N N N N N N -3.027 19.716 -36.502 5.852 -1.044 1.805 H6 QJN 39 QJN "H2'" H10 H 0 1 N N N N N N -4.466 17.585 -38.091 5.764 0.003 -1.061 "H2'" QJN 40 QJN "HO2'" H11 H 0 0 N N N N N N -3.102 16.918 -36.336 7.751 0.555 0.146 "HO2'" QJN 41 QJN "H3'" H12 H 0 1 N N N N N N -1.962 19.103 -38.918 4.490 1.031 1.515 "H3'" QJN 42 QJN "HO3'" H13 H 0 0 N N N N N N -1.976 16.876 -39.527 5.149 2.734 -0.024 "HO3'" QJN 43 QJN "H4'" H14 H 0 1 N N N N N N -4.838 19.060 -39.812 3.269 -0.127 -1.032 "H4'" QJN 44 QJN "H5'" H15 H 0 1 N N N N N N -2.930 21.157 -38.764 3.358 -1.173 1.834 "H5'" QJN 45 QJN "HO6'" H16 H 0 0 N N N N N N -6.434 22.218 -40.574 1.408 -3.980 0.925 "HO6'" QJN 46 QJN "H6'1" H17 H 0 0 N N N N N N -4.126 22.252 -40.546 1.227 -1.624 0.578 "H6'1" QJN 47 QJN "H6'2" H18 H 0 0 N N N N N N -4.852 22.733 -38.974 2.187 -2.410 -0.698 "H6'2" QJN 48 QJN "H7'" H19 H 0 1 N N N N N N -5.644 20.069 -37.908 4.632 -2.201 -0.742 "H7'" QJN 49 QJN H1 H20 H 0 1 N N N N N N -5.326 19.210 -41.696 2.424 2.272 -0.856 H1 QJN 50 QJN HO6 H21 H 0 1 N N N N N N -5.511 23.771 -44.851 0.283 -1.972 -3.882 HO6 QJN 51 QJN H3 H22 H 0 1 N N N N N N -1.933 19.447 -43.503 -0.344 0.919 1.279 H3 QJN 52 QJN HO3 H23 H 0 1 N N N N N N -2.242 17.561 -44.850 -1.461 2.957 1.833 HO3 QJN 53 QJN HO2 H24 H 0 1 N N N N N N -4.129 17.126 -42.084 1.800 3.744 1.082 HO2 QJN 54 QJN HO7 H25 H 0 1 N N N N N N -5.165 21.326 -36.000 5.500 -3.825 0.779 HO7 QJN 55 QJN H91 H26 H 0 1 N N N N N N -0.494 22.357 -46.827 -4.540 -1.307 -0.624 H91 QJN 56 QJN H9 H27 H 0 1 N N N N N N -1.521 22.778 -48.239 -4.377 -0.767 1.064 H9 QJN 57 QJN H101 H28 H 0 0 N N N N N N -1.783 20.449 -48.839 -6.016 1.045 0.641 H101 QJN 58 QJN H10 H29 H 0 1 N N N N N N -1.001 19.911 -47.314 -6.179 0.505 -1.047 H10 QJN 59 QJN H111 H30 H 0 0 N N N N N N 0.630 19.581 -49.018 -6.979 -1.707 -0.262 H111 QJN 60 QJN H11 H31 H 0 1 N N N N N N 1.130 21.081 -48.165 -6.817 -1.166 1.426 H11 QJN 61 QJN H121 H32 H 0 0 N N N N N N 0.438 22.472 -49.937 -8.456 0.645 1.004 H121 QJN 62 QJN H12 H33 H 0 1 N N N N N N -0.610 21.201 -50.652 -8.618 0.105 -0.684 H12 QJN 63 QJN H131 H34 H 0 0 N N N N N N 1.715 21.901 -51.758 -9.418 -2.107 0.101 H131 QJN 64 QJN H13 H35 H 0 1 N N N N N N 1.124 20.205 -51.785 -9.256 -1.566 1.789 H13 QJN 65 QJN H14 H36 H 0 1 N N N N N N 3.508 20.316 -51.188 -10.895 0.245 1.367 H14 QJN 66 QJN H141 H37 H 0 0 N N N N N N 3.116 21.381 -49.796 -11.058 -0.295 -0.322 H141 QJN 67 QJN H7 H38 H 0 1 N N N N N N 2.526 19.685 -49.824 -11.599 -1.349 1.007 H7 QJN 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QJN C13 C14 SING N N 1 QJN C13 C12 SING N N 2 QJN C12 C11 SING N N 3 QJN C11 C10 SING N N 4 QJN C10 C9 SING N N 5 QJN C9 C8 SING N N 6 QJN C8 O4 SING N N 7 QJN O4 C4 SING N N 8 QJN O3 C3 SING N N 9 QJN O6 C6 SING N N 10 QJN C4 C3 SING N N 11 QJN C4 C5 SING N N 12 QJN C3 C2 SING N N 13 QJN C6 C5 SING N N 14 QJN C5 O5 SING N N 15 QJN C2 O2 SING N N 16 QJN C2 C1 SING N N 17 QJN O5 C1 SING N N 18 QJN C1 O1 SING N N 19 QJN O1 "C4'" SING N N 20 QJN "O6'" "C6'" SING N N 21 QJN "O3'" "C3'" SING N N 22 QJN "C4'" "C3'" SING N N 23 QJN "C4'" "C5'" SING N N 24 QJN "C6'" "C5'" SING N N 25 QJN "C3'" "C2'" SING N N 26 QJN "C5'" "C7'" SING N N 27 QJN "C2'" "O2'" SING N N 28 QJN "C2'" "C1'" SING N N 29 QJN "C7'" "C1'" SING N N 30 QJN "C7'" O7 SING N N 31 QJN C2 H2 SING N N 32 QJN C4 H4 SING N N 33 QJN C5 H5 SING N N 34 QJN C6 H62 SING N N 35 QJN C6 H61 SING N N 36 QJN C8 H81 SING N N 37 QJN C8 H8 SING N N 38 QJN "C1'" "H1'1" SING N N 39 QJN "C1'" H6 SING N N 40 QJN "C2'" "H2'" SING N N 41 QJN "O2'" "HO2'" SING N N 42 QJN "C3'" "H3'" SING N N 43 QJN "O3'" "HO3'" SING N N 44 QJN "C4'" "H4'" SING N N 45 QJN "C5'" "H5'" SING N N 46 QJN "O6'" "HO6'" SING N N 47 QJN "C6'" "H6'1" SING N N 48 QJN "C6'" "H6'2" SING N N 49 QJN "C7'" "H7'" SING N N 50 QJN C1 H1 SING N N 51 QJN O6 HO6 SING N N 52 QJN C3 H3 SING N N 53 QJN O3 HO3 SING N N 54 QJN O2 HO2 SING N N 55 QJN O7 HO7 SING N N 56 QJN C9 H91 SING N N 57 QJN C9 H9 SING N N 58 QJN C10 H101 SING N N 59 QJN C10 H10 SING N N 60 QJN C11 H111 SING N N 61 QJN C11 H11 SING N N 62 QJN C12 H121 SING N N 63 QJN C12 H12 SING N N 64 QJN C13 H131 SING N N 65 QJN C13 H13 SING N N 66 QJN C14 H14 SING N N 67 QJN C14 H141 SING N N 68 QJN C14 H7 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QJN InChI InChI 1.03 "InChI=1S/C20H38O10/c1-2-3-4-5-6-7-28-19-14(10-22)29-20(17(27)16(19)26)30-18-11(9-21)12(23)8-13(24)15(18)25/h11-27H,2-10H2,1H3/t11-,12+,13-,14+,15+,16+,17+,18+,19+,20+/m0/s1" QJN InChIKey InChI 1.03 JXHBWOMWKSCDSB-ZXVXKJDSSA-N QJN SMILES_CANONICAL CACTVS 3.385 "CCCCCCCO[C@H]1[C@H](O)[C@@H](O)[C@H](O[C@@H]1CO)O[C@H]2[C@H](O)[C@@H](O)C[C@@H](O)[C@@H]2CO" QJN SMILES CACTVS 3.385 "CCCCCCCO[CH]1[CH](O)[CH](O)[CH](O[CH]1CO)O[CH]2[CH](O)[CH](O)C[CH](O)[CH]2CO" QJN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCO[C@@H]1[C@H](O[C@@H]([C@@H]([C@H]1O)O)O[C@@H]2[C@H]([C@@H](C[C@@H]([C@H]2O)O)O)CO)CO" QJN SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCOC1C(OC(C(C1O)O)OC2C(C(CC(C2O)O)O)CO)CO" # _pdbx_chem_comp_identifier.comp_id QJN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},2~{S},4~{R},5~{S},6~{R})-6-[(2~{S},3~{R},4~{R},5~{S},6~{R})-5-heptoxy-6-(hydroxymethyl)-3,4-bis(oxidanyl)oxan-2-yl]oxy-5-(hydroxymethyl)cyclohexane-1,2,4-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QJN "Create component" 2020-06-18 PDBE QJN "Initial release" 2021-02-10 RCSB QJN "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id QJN _pdbx_chem_comp_pcm.modified_residue_id ASP _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom "C1'" _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OD1 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #