data_QMK # _chem_comp.id QMK _chem_comp.name "~{N}-[2-[1-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-[[tris(oxidanyl)-$l^{5}-phosphanyl]oxymethyl]oxolan-2-yl]-1,2,3-triazol-4-yl]ethyl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H19 N4 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-03 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 366.264 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QMK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6ZMD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QMK C4 C1 C 0 1 N N N N N N 33.315 -11.736 27.107 4.550 0.865 0.350 C4 QMK 1 QMK C5 C2 C 0 1 Y N N N N N 33.512 -13.200 27.337 3.095 1.008 -0.016 C5 QMK 2 QMK C6 C3 C 0 1 Y N N N N N 32.890 -14.282 26.787 2.083 1.359 0.812 C6 QMK 3 QMK C11 C4 C 0 1 N N R N N N 31.862 -17.034 26.350 -1.002 2.811 -0.334 C11 QMK 4 QMK C7 C5 C 0 1 N N R N N N 33.154 -16.761 27.118 -0.390 1.681 0.524 C7 QMK 5 QMK C8 C6 C 0 1 N N R N N N 33.641 -18.460 25.610 -2.605 1.105 0.342 C8 QMK 6 QMK C9 C7 C 0 1 N N N N N N 34.026 -18.336 24.156 -3.583 0.149 -0.343 C9 QMK 7 QMK C10 C8 C 0 1 N N S N N N 32.134 -18.480 25.918 -2.493 2.423 -0.457 C10 QMK 8 QMK N1 N1 N 0 1 N N N N N N 33.978 -9.766 25.777 6.455 -0.668 0.305 N1 QMK 9 QMK N2 N2 N 0 1 Y N N N N N 33.457 -15.360 27.366 0.961 1.360 0.055 N2 QMK 10 QMK C3 C9 C 0 1 N N N N N N 34.194 -11.186 25.997 5.041 -0.528 -0.050 C3 QMK 11 QMK N3 N3 N 0 1 Y N N N N N 34.414 -14.972 28.242 1.284 1.031 -1.146 N3 QMK 12 QMK C1 C10 C 0 1 N N N N N N 33.842 -7.438 26.374 8.560 -1.964 0.410 C1 QMK 13 QMK C2 C11 C 0 1 N N N N N N 34.324 -8.825 26.660 7.105 -1.820 0.045 C2 QMK 14 QMK N4 N4 N 0 1 Y N N N N N 34.437 -13.657 28.221 2.550 0.820 -1.223 N4 QMK 15 QMK O1 O1 O 0 1 N N N N N N 35.011 -9.083 27.646 6.518 -2.740 -0.484 O1 QMK 16 QMK O2 O2 O 0 1 N N N N N N 34.172 -17.313 26.321 -1.270 0.553 0.331 O2 QMK 17 QMK O3 O3 O 0 1 N N N N N N 35.440 -18.025 24.069 -3.761 -1.013 0.469 O3 QMK 18 QMK O4 O4 O 0 1 N N N N N N 37.551 -17.431 22.881 -4.784 -3.303 1.257 O4 QMK 19 QMK O5 O5 O 0 1 N N N N N N 35.986 -19.166 21.918 -6.087 -1.717 -0.213 O5 QMK 20 QMK O7 O6 O 0 1 N N N N N N 31.882 -19.351 27.012 -3.322 3.432 0.123 O7 QMK 21 QMK O8 O7 O 0 1 N N N N N N 30.754 -16.876 27.214 -0.865 4.071 0.325 O8 QMK 22 QMK P1 P1 P 0 1 N N N N N N 36.110 -17.825 22.615 -4.726 -2.234 0.055 P1 QMK 23 QMK H1 H1 H 0 1 N N N N N N 33.550 -11.200 28.038 5.133 1.621 -0.176 H1 QMK 24 QMK H2 H2 H 0 1 N N N N N N 32.262 -11.562 26.839 4.669 0.997 1.425 H2 QMK 25 QMK H3 H3 H 0 1 N N N N N N 32.107 -14.277 26.043 2.156 1.591 1.864 H3 QMK 26 QMK H4 H4 H 0 1 N N N N N N 31.795 -16.379 25.469 -0.531 2.842 -1.317 H4 QMK 27 QMK H5 H5 H 0 1 N N N N N N 33.102 -17.294 28.079 -0.367 1.972 1.574 H5 QMK 28 QMK H6 H6 H 0 1 N N N N N N 34.088 -19.380 26.015 -2.924 1.307 1.364 H6 QMK 29 QMK H7 H7 H 0 1 N N N N N N 33.441 -17.531 23.687 -4.542 0.647 -0.480 H7 QMK 30 QMK H8 H8 H 0 1 N N N N N N 33.824 -19.285 23.638 -3.184 -0.145 -1.314 H8 QMK 31 QMK H9 H9 H 0 1 N N N N N N 31.552 -18.741 25.022 -2.761 2.261 -1.501 H9 QMK 32 QMK H10 H10 H 0 1 N N N N N N 33.548 -9.478 24.921 6.924 0.068 0.728 H10 QMK 33 QMK H11 H11 H 0 1 N N N N N N 33.969 -11.727 25.066 4.458 -1.284 0.475 H11 QMK 34 QMK H12 H12 H 0 1 N N N N N N 35.248 -11.346 26.268 4.922 -0.660 -1.126 H12 QMK 35 QMK H13 H13 H 0 1 N N N N N N 34.198 -6.756 27.160 8.642 -2.358 1.423 H13 QMK 36 QMK H14 H14 H 0 1 N N N N N N 34.231 -7.109 25.399 9.044 -2.647 -0.287 H14 QMK 37 QMK H15 H15 H 0 1 N N N N N N 32.742 -7.429 26.352 9.045 -0.989 0.359 H15 QMK 38 QMK H16 H16 H 0 1 N N N N N N 38.131 -18.110 22.556 -5.349 -4.067 1.076 H16 QMK 39 QMK H18 H18 H 0 1 N N N N N N 30.951 -19.362 27.201 -3.290 4.281 -0.339 H18 QMK 40 QMK H19 H19 H 0 1 N N N N N N 30.652 -15.958 27.435 -1.233 4.816 -0.170 H19 QMK 41 QMK O6 O8 O 0 1 N Y N N N N 35.226 -16.624 22.164 -4.152 -2.946 -1.270 O6 QMK 42 QMK H21 H21 H 0 1 N N N N N N 34.666 -16.894 21.446 -3.261 -3.309 -1.167 H21 QMK 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QMK O5 P1 DOUB N N 1 QMK P1 O4 SING N N 2 QMK P1 O3 SING N N 3 QMK O3 C9 SING N N 4 QMK C9 C8 SING N N 5 QMK C8 C10 SING N N 6 QMK C8 O2 SING N N 7 QMK N1 C3 SING N N 8 QMK N1 C2 SING N N 9 QMK C10 C11 SING N N 10 QMK C10 O7 SING N N 11 QMK C3 C4 SING N N 12 QMK O2 C7 SING N N 13 QMK C11 C7 SING N N 14 QMK C11 O8 SING N N 15 QMK C1 C2 SING N N 16 QMK C2 O1 DOUB N N 17 QMK C6 C5 DOUB Y N 18 QMK C6 N2 SING Y N 19 QMK C4 C5 SING N N 20 QMK C7 N2 SING N N 21 QMK C5 N4 SING Y N 22 QMK N2 N3 SING Y N 23 QMK N4 N3 DOUB Y N 24 QMK C4 H1 SING N N 25 QMK C4 H2 SING N N 26 QMK C6 H3 SING N N 27 QMK C11 H4 SING N N 28 QMK C7 H5 SING N N 29 QMK C8 H6 SING N N 30 QMK C9 H7 SING N N 31 QMK C9 H8 SING N N 32 QMK C10 H9 SING N N 33 QMK N1 H10 SING N N 34 QMK C3 H11 SING N N 35 QMK C3 H12 SING N N 36 QMK C1 H13 SING N N 37 QMK C1 H14 SING N N 38 QMK C1 H15 SING N N 39 QMK O4 H16 SING N N 40 QMK O7 H18 SING N N 41 QMK O8 H19 SING N N 42 QMK P1 O6 SING N N 43 QMK O6 H21 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QMK InChI InChI 1.03 "InChI=1S/C11H19N4O8P/c1-6(16)12-3-2-7-4-15(14-13-7)11-10(18)9(17)8(23-11)5-22-24(19,20)21/h4,8-11,17-18H,2-3,5H2,1H3,(H,12,16)(H2,19,20,21)/t8-,9-,10-,11-/m1/s1" QMK InChIKey InChI 1.03 KBIJUYSCKWPFAX-GWOFURMSSA-N QMK SMILES_CANONICAL CACTVS 3.385 "CC(=O)NCCc1cn(nn1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O" QMK SMILES CACTVS 3.385 "CC(=O)NCCc1cn(nn1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O" QMK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)NCCc1cn(nn1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O" QMK SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NCCc1cn(nn1)C2C(C(C(O2)COP(=O)(O)O)O)O" # _pdbx_chem_comp_identifier.comp_id QMK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-[4-(2-acetamidoethyl)-1,2,3-triazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QMK "Create component" 2020-07-03 PDBE QMK "Initial release" 2021-04-14 RCSB QMK "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 QMK CYS None Crosslinker "Amino-acid side chain" "Any position" C1 SG ? ? 2 QMK THR None Crosslinker "Amino-acid side chain" "Any position" P1 OG1 ? ? #