data_QOB # _chem_comp.id QOB _chem_comp.name "~{N}-[(2~{S},3~{R})-1-[[(5~{S},8~{S},10~{S})-5-methyl-10-oxidanyl-2,7-bis(oxidanylidene)-1,6-diazacyclododec-8-yl]amino]-3-oxidanyl-1-oxidanylidene-butan-2-yl]-5-phenyl-pentanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H40 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Syrbactin inhibitor; HB334" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-09 _chem_comp.pdbx_modified_date 2021-05-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 504.619 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QOB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6ZP6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QOB C4 C1 C 0 1 Y N N 53.017 -132.007 34.056 9.466 -1.775 -0.441 C4 QOB 1 QOB C5 C2 C 0 1 Y N N 52.059 -131.343 33.336 10.577 -1.970 -1.240 C5 QOB 2 QOB C6 C3 C 0 1 Y N N 51.340 -132.006 32.373 11.277 -0.882 -1.727 C6 QOB 3 QOB C7 C4 C 0 1 Y N N 51.583 -133.344 32.132 10.866 0.400 -1.416 C7 QOB 4 QOB C8 C5 C 0 1 Y N N 52.545 -134.008 32.867 9.755 0.595 -0.618 C8 QOB 5 QOB C15 C6 C 0 1 N N N 61.234 -135.189 37.249 -0.726 0.151 0.303 C15 QOB 6 QOB C17 C7 C 0 1 N N S 61.306 -136.495 39.239 -3.017 -0.679 0.319 C17 QOB 7 QOB C21 C8 C 0 1 N N N 59.218 -139.250 40.599 -6.150 -2.491 1.059 C21 QOB 8 QOB C22 C9 C 0 1 N N N 59.687 -139.657 41.952 -7.294 -2.524 0.042 C22 QOB 9 QOB C24 C10 C 0 1 N N N 61.599 -138.597 43.121 -6.862 -0.324 -0.832 C24 QOB 10 QOB C26 C11 C 0 1 N N N 62.937 -138.357 43.045 -7.251 1.105 -1.108 C26 QOB 11 QOB C28 C12 C 0 1 N N S 63.541 -136.185 42.126 -4.978 2.115 -1.345 C28 QOB 12 QOB C27 C13 C 0 1 N N N 63.327 -136.948 43.390 -6.256 1.725 -2.091 C27 QOB 13 QOB C29 C14 C 0 1 N N N 63.838 -134.751 42.464 -4.235 3.201 -2.126 C29 QOB 14 QOB N30 N1 N 0 1 N N N 62.357 -136.258 41.302 -4.120 0.904 -1.229 N30 QOB 15 QOB C31 C15 C 0 1 N N N 62.444 -136.409 39.961 -3.867 0.541 0.073 C31 QOB 16 QOB O32 O1 O 0 1 N N N 63.531 -136.469 39.440 -4.316 1.185 0.998 O32 QOB 17 QOB O25 O2 O 0 1 N N N 60.919 -138.225 44.060 -5.775 -0.744 -1.168 O25 QOB 18 QOB N23 N2 N 0 1 N N N 61.081 -139.316 42.071 -7.756 -1.137 -0.194 N23 QOB 19 QOB C19 C16 C 0 1 N N S 59.586 -137.865 40.311 -4.813 -2.415 0.319 C19 QOB 20 QOB O20 O3 O 0 1 N N N 58.521 -137.329 39.637 -4.340 -3.737 0.053 O20 QOB 21 QOB C18 C17 C 0 1 N N N 60.750 -137.864 39.388 -3.793 -1.674 1.185 C18 QOB 22 QOB N16 N3 N 0 1 N N N 61.609 -136.294 37.845 -1.787 -0.285 1.011 N16 QOB 23 QOB O33 O4 O 0 1 N N N 60.621 -134.311 37.799 -0.759 0.138 -0.909 O33 QOB 24 QOB C14 C18 C 0 1 N N S 61.540 -135.050 35.798 0.501 0.655 1.019 C14 QOB 25 QOB C34 C19 C 0 1 N N R 62.610 -134.030 35.675 0.342 2.148 1.315 C34 QOB 26 QOB C36 C20 C 0 1 N N N 63.856 -134.526 36.338 -0.821 2.353 2.288 C36 QOB 27 QOB O35 O5 O 0 1 N N N 62.863 -133.890 34.312 1.546 2.649 1.899 O35 QOB 28 QOB N13 N4 N 0 1 N N N 60.409 -134.438 35.133 1.679 0.449 0.172 N13 QOB 29 QOB C12 C21 C 0 1 N N N 59.146 -134.727 35.379 2.900 0.336 0.733 C12 QOB 30 QOB O37 O6 O 0 1 N N N 58.781 -135.549 36.194 3.023 0.406 1.937 O37 QOB 31 QOB C1 C22 C 0 1 N N N 58.120 -133.963 34.597 4.111 0.123 -0.138 C1 QOB 32 QOB C2 C23 C 0 1 N N N 56.699 -134.353 34.954 5.360 0.030 0.741 C2 QOB 33 QOB C41 C24 C 0 1 N N N 55.628 -133.617 34.196 6.591 -0.186 -0.143 C41 QOB 34 QOB C40 C25 C 0 1 N N N 54.218 -134.008 34.552 7.840 -0.280 0.736 C40 QOB 35 QOB C3 C26 C 0 1 Y N N 53.256 -133.335 33.833 9.051 -0.492 -0.135 C3 QOB 36 QOB H1 H1 H 0 1 N N N 53.588 -131.478 34.805 8.919 -2.625 -0.060 H1 QOB 37 QOB H2 H2 H 0 1 N N N 51.869 -130.297 33.526 10.899 -2.972 -1.482 H2 QOB 38 QOB H3 H3 H 0 1 N N N 50.586 -131.482 31.805 12.146 -1.035 -2.351 H3 QOB 39 QOB H4 H4 H 0 1 N N N 51.023 -133.869 31.372 11.414 1.250 -1.796 H4 QOB 40 QOB H5 H5 H 0 1 N N N 52.739 -135.054 32.684 9.434 1.597 -0.374 H5 QOB 41 QOB H6 H6 H 0 1 N N N 60.560 -135.759 39.573 -2.765 -1.145 -0.633 H6 QOB 42 QOB H7 H7 H 0 1 N N N 58.123 -139.348 40.553 -6.260 -1.617 1.701 H7 QOB 43 QOB H8 H8 H 0 1 N N N 59.677 -139.908 39.846 -6.179 -3.395 1.666 H8 QOB 44 QOB H9 H9 H 0 1 N N N 59.108 -139.126 42.721 -6.939 -2.955 -0.894 H9 QOB 45 QOB H10 H10 H 0 1 N N N 59.558 -140.742 42.079 -8.116 -3.122 0.435 H10 QOB 46 QOB H11 H11 H 0 1 N N N 63.450 -139.038 43.740 -8.252 1.132 -1.539 H11 QOB 47 QOB H12 H12 H 0 1 N N N 63.268 -138.565 42.017 -7.242 1.671 -0.176 H12 QOB 48 QOB H13 H13 H 0 1 N N N 64.399 -136.612 41.586 -5.229 2.484 -0.351 H13 QOB 49 QOB H14 H14 H 0 1 N N N 64.256 -136.955 43.979 -6.016 1.001 -2.870 H14 QOB 50 QOB H15 H15 H 0 1 N N N 62.525 -136.475 43.976 -6.697 2.613 -2.544 H15 QOB 51 QOB H16 H16 H 0 1 N N N 64.740 -134.701 43.091 -4.875 4.077 -2.229 H16 QOB 52 QOB H17 H17 H 0 1 N N N 64.004 -134.183 41.537 -3.326 3.475 -1.592 H17 QOB 53 QOB H18 H18 H 0 1 N N N 62.987 -134.319 43.011 -3.975 2.823 -3.116 H18 QOB 54 QOB H19 H19 H 0 1 N N N 61.456 -136.196 41.731 -3.774 0.419 -1.995 H19 QOB 55 QOB H20 H20 H 0 1 N N N 61.705 -139.619 41.351 -8.632 -0.827 0.084 H20 QOB 56 QOB H21 H21 H 0 1 N N N 59.821 -137.317 41.235 -4.948 -1.881 -0.621 H21 QOB 57 QOB H22 H22 H 0 1 N N N 57.760 -137.317 40.205 -4.939 -4.266 -0.493 H22 QOB 58 QOB H23 H23 H 0 1 N N N 60.429 -138.232 38.402 -3.099 -2.391 1.624 H23 QOB 59 QOB H24 H24 H 0 1 N N N 61.530 -138.528 39.790 -4.312 -1.137 1.979 H24 QOB 60 QOB H25 H25 H 0 1 N N N 62.104 -136.996 37.333 -1.736 -0.339 1.978 H25 QOB 61 QOB H26 H26 H 0 1 N N N 61.830 -136.009 35.345 0.626 0.111 1.954 H26 QOB 62 QOB H27 H27 H 0 1 N N N 62.289 -133.081 36.130 0.138 2.683 0.387 H27 QOB 63 QOB H28 H28 H 0 1 N N N 63.676 -134.643 37.417 -0.669 1.734 3.172 H28 QOB 64 QOB H29 H29 H 0 1 N N N 64.139 -135.497 35.906 -0.868 3.402 2.582 H29 QOB 65 QOB H30 H30 H 0 1 N N N 64.669 -133.802 36.178 -1.755 2.070 1.803 H30 QOB 66 QOB H31 H31 H 0 1 N N N 63.546 -133.243 34.181 2.326 2.552 1.336 H31 QOB 67 QOB H32 H32 H 0 1 N N N 60.599 -133.746 34.437 1.580 0.393 -0.791 H32 QOB 68 QOB H33 H33 H 0 1 N N N 58.279 -134.156 33.526 3.995 -0.801 -0.703 H33 QOB 69 QOB H34 H34 H 0 1 N N N 58.251 -132.890 34.799 4.214 0.961 -0.828 H34 QOB 70 QOB H35 H35 H 0 1 N N N 56.552 -134.160 36.027 5.477 0.954 1.306 H35 QOB 71 QOB H36 H36 H 0 1 N N N 56.580 -135.428 34.755 5.257 -0.808 1.431 H36 QOB 72 QOB H37 H37 H 0 1 N N N 55.775 -133.809 33.123 6.474 -1.111 -0.709 H37 QOB 73 QOB H38 H38 H 0 1 N N N 55.745 -132.542 34.396 6.694 0.651 -0.833 H38 QOB 74 QOB H39 H39 H 0 1 N N N 54.060 -133.801 35.621 7.956 0.645 1.301 H39 QOB 75 QOB H40 H40 H 0 1 N N N 54.099 -135.086 34.366 7.736 -1.117 1.426 H40 QOB 76 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QOB C7 C6 DOUB Y N 1 QOB C7 C8 SING Y N 2 QOB C6 C5 SING Y N 3 QOB C8 C3 DOUB Y N 4 QOB C5 C4 DOUB Y N 5 QOB C3 C4 SING Y N 6 QOB C3 C40 SING N N 7 QOB C41 C40 SING N N 8 QOB C41 C2 SING N N 9 QOB O35 C34 SING N N 10 QOB C1 C2 SING N N 11 QOB C1 C12 SING N N 12 QOB N13 C12 SING N N 13 QOB N13 C14 SING N N 14 QOB C12 O37 DOUB N N 15 QOB C34 C14 SING N N 16 QOB C34 C36 SING N N 17 QOB C14 C15 SING N N 18 QOB C15 O33 DOUB N N 19 QOB C15 N16 SING N N 20 QOB N16 C17 SING N N 21 QOB C17 C18 SING N N 22 QOB C17 C31 SING N N 23 QOB C18 C19 SING N N 24 QOB O32 C31 DOUB N N 25 QOB O20 C19 SING N N 26 QOB C31 N30 SING N N 27 QOB C19 C21 SING N N 28 QOB C21 C22 SING N N 29 QOB N30 C28 SING N N 30 QOB C22 N23 SING N N 31 QOB N23 C24 SING N N 32 QOB C28 C29 SING N N 33 QOB C28 C27 SING N N 34 QOB C26 C24 SING N N 35 QOB C26 C27 SING N N 36 QOB C24 O25 DOUB N N 37 QOB C4 H1 SING N N 38 QOB C5 H2 SING N N 39 QOB C6 H3 SING N N 40 QOB C7 H4 SING N N 41 QOB C8 H5 SING N N 42 QOB C17 H6 SING N N 43 QOB C21 H7 SING N N 44 QOB C21 H8 SING N N 45 QOB C22 H9 SING N N 46 QOB C22 H10 SING N N 47 QOB C26 H11 SING N N 48 QOB C26 H12 SING N N 49 QOB C28 H13 SING N N 50 QOB C27 H14 SING N N 51 QOB C27 H15 SING N N 52 QOB C29 H16 SING N N 53 QOB C29 H17 SING N N 54 QOB C29 H18 SING N N 55 QOB N30 H19 SING N N 56 QOB N23 H20 SING N N 57 QOB C19 H21 SING N N 58 QOB O20 H22 SING N N 59 QOB C18 H23 SING N N 60 QOB C18 H24 SING N N 61 QOB N16 H25 SING N N 62 QOB C14 H26 SING N N 63 QOB C34 H27 SING N N 64 QOB C36 H28 SING N N 65 QOB C36 H29 SING N N 66 QOB C36 H30 SING N N 67 QOB O35 H31 SING N N 68 QOB N13 H32 SING N N 69 QOB C1 H33 SING N N 70 QOB C1 H34 SING N N 71 QOB C2 H35 SING N N 72 QOB C2 H36 SING N N 73 QOB C41 H37 SING N N 74 QOB C41 H38 SING N N 75 QOB C40 H39 SING N N 76 QOB C40 H40 SING N N 77 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QOB InChI InChI 1.03 "InChI=1S/C26H40N4O6/c1-17-12-13-22(33)27-15-14-20(32)16-21(25(35)28-17)29-26(36)24(18(2)31)30-23(34)11-7-6-10-19-8-4-3-5-9-19/h3-5,8-9,17-18,20-21,24,31-32H,6-7,10-16H2,1-2H3,(H,27,33)(H,28,35)(H,29,36)(H,30,34)/t17-,18+,20-,21-,24-/m0/s1" QOB InChIKey InChI 1.03 WMBRGTCTXHPVLU-KGLBSCIUSA-N QOB SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@H](NC(=O)CCCCc1ccccc1)C(=O)N[C@H]2C[C@@H](O)CCNC(=O)CC[C@H](C)NC2=O" QOB SMILES CACTVS 3.385 "C[CH](O)[CH](NC(=O)CCCCc1ccccc1)C(=O)N[CH]2C[CH](O)CCNC(=O)CC[CH](C)NC2=O" QOB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CCC(=O)NCC[C@@H](C[C@@H](C(=O)N1)NC(=O)[C@H]([C@@H](C)O)NC(=O)CCCCc2ccccc2)O" QOB SMILES "OpenEye OEToolkits" 2.0.7 "CC1CCC(=O)NCCC(CC(C(=O)N1)NC(=O)C(C(C)O)NC(=O)CCCCc2ccccc2)O" # _pdbx_chem_comp_identifier.comp_id QOB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{S},3~{R})-1-[[(5~{S},8~{S},10~{S})-5-methyl-10-oxidanyl-2,7-bis(oxidanylidene)-1,6-diazacyclododec-8-yl]amino]-3-oxidanyl-1-oxidanylidene-butan-2-yl]-5-phenyl-pentanamide" # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 QOB "Syrbactin inhibitor" ? ? 2 QOB HB334 ? ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QOB "Create component" 2020-07-09 PDBE QOB "Modify synonyms" 2020-07-10 PDBE QOB "Initial release" 2021-05-19 RCSB ##